Wall clock time and date at job start Mon Mar 30 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86805 * 120.00216 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00076 * 3 2 1 5 5 H 1.48500 * 109.47038 * 29.99878 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.00069 * 3 2 1 7 7 C 1.38817 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00206 * 158.41814 * 7 2 1 9 9 N 1.36940 * 119.99792 * 338.41026 * 7 2 1 10 10 C 1.46496 * 119.99470 * 143.88648 * 9 7 2 11 11 C 1.52998 * 109.47452 * 270.00175 * 10 9 7 12 12 C 1.50691 * 109.47514 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00331 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00493 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00180 * 323.88779 * 9 7 2 16 16 C 1.50693 * 109.47393 * 263.98726 * 15 9 7 17 17 C 1.38752 * 120.38707 * 84.71912 * 16 15 9 18 18 C 1.38507 * 118.44955 * 180.02562 * 17 16 15 19 19 C 1.38560 * 119.13788 * 0.02562 * 18 17 16 20 20 F 1.35107 * 119.64743 * 180.02562 * 19 18 17 21 21 N 1.32026 * 120.70345 * 359.96927 * 19 18 17 22 22 C 1.31942 * 121.68548 * 0.05728 * 21 19 18 23 23 H 0.97001 * 120.00167 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47520 * 30.00176 * 10 9 7 25 25 H 1.09005 * 109.47332 * 150.00283 * 10 9 7 26 26 H 1.09004 * 109.47197 * 300.00754 * 11 10 9 27 27 H 1.09000 * 109.47146 * 60.00014 * 11 10 9 28 28 H 0.96697 * 117.00812 * 179.97438 * 14 12 11 29 29 H 1.09000 * 109.46852 * 143.98335 * 15 9 7 30 30 H 1.09004 * 109.47387 * 23.99106 * 15 9 7 31 31 H 1.07995 * 120.77280 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.42780 * 179.72015 * 18 17 16 33 33 H 1.08001 * 119.59826 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0334 -1.2352 -0.3435 9 7 1.3975 -2.3463 0.4374 10 6 1.6880 -3.6266 -0.2125 11 6 0.7074 -3.8472 -1.3661 12 6 1.0059 -5.1645 -2.0342 13 8 1.9104 -5.8559 -1.6297 14 8 0.2675 -5.5695 -3.0795 15 6 0.4516 -2.2899 1.5546 16 6 1.1654 -2.6380 2.8353 17 6 1.8558 -1.6633 3.5413 18 6 2.4979 -2.0277 4.7132 19 6 2.4302 -3.3448 5.1382 20 9 3.0524 -3.7114 6.2800 21 7 1.7633 -4.2450 4.4397 22 6 1.1412 -3.9312 3.3193 23 1 -0.4850 0.8400 -0.0004 24 1 2.7071 -3.6149 -0.5992 25 1 1.5837 -4.4341 0.5124 26 1 -0.3117 -3.8589 -0.9795 27 1 0.8117 -3.0399 -2.0909 28 1 0.4969 -6.4213 -3.4754 29 1 -0.3557 -3.0020 1.3834 30 1 0.0386 -1.2840 1.6307 31 1 1.8916 -0.6443 3.1854 32 1 3.0484 -1.2957 5.2856 33 1 0.6059 -4.6948 2.7745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:52 Heat of formation + Delta-G solvation = -84.469840 kcal Electronic energy + Delta-G solvation = -20108.084007 eV Core-core repulsion = 16662.998130 eV Total energy + Delta-G solvation = -3445.085877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.62581 -39.86700 -39.57827 -36.32509 -35.68722 -32.45324 -32.16031 -31.27601 -29.37127 -25.90139 -24.91412 -23.39886 -22.43346 -21.18518 -19.86529 -17.79341 -17.65777 -17.05979 -16.72531 -16.05790 -15.66032 -15.62826 -15.04545 -14.62141 -14.02987 -13.90213 -13.72125 -13.24715 -12.96807 -12.75946 -12.59760 -12.35539 -11.95486 -11.45746 -11.33012 -11.21776 -10.93721 -10.68864 -10.40241 -10.38004 -10.19309 -10.05939 -9.46685 -9.23005 -8.74288 -8.35615 -6.93700 -6.09209 -3.61953 1.37207 1.61986 2.59416 3.20105 3.30132 3.32248 3.46319 3.99533 4.05688 4.29710 4.94406 5.06339 5.28465 5.36667 5.43798 5.50182 5.65154 5.73835 5.87588 6.02355 6.25190 6.29849 6.36897 6.42409 6.57880 6.71512 6.85223 6.94458 7.09214 7.31009 7.60051 8.05894 8.20029 8.26447 8.89110 9.50071 10.07386 10.93266 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.007800 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.677256 B = 3589.039188 C = 5579.246256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.017 3.983 3 Si 0.894 3.106 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.065 0.935 9 N -0.570 5.570 10 C 0.159 3.841 11 C -0.130 4.130 12 C 0.478 3.522 13 O -0.527 6.527 14 O -0.524 6.524 15 C 0.180 3.820 16 C -0.133 4.133 17 C -0.032 4.032 18 C -0.195 4.195 19 C 0.275 3.725 20 F -0.127 7.127 21 N -0.519 5.519 22 C 0.124 3.876 23 H 0.259 0.741 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.398 0.602 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -4.212 1.635 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.185 4.185 3 Si 0.723 3.277 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.288 5.288 10 C 0.032 3.968 11 C -0.171 4.171 12 C 0.321 3.679 13 O -0.416 6.416 14 O -0.335 6.335 15 C 0.053 3.947 16 C -0.138 4.138 17 C -0.058 4.058 18 C -0.216 4.216 19 C 0.120 3.880 20 F -0.106 7.106 21 N -0.233 5.233 22 C -0.033 4.033 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.256 0.744 29 H 0.060 0.940 30 H 0.129 0.871 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.551 -4.713 2.249 5.251 hybrid contribution 0.763 1.031 -0.412 1.347 sum 0.213 -3.682 1.837 4.120 Atomic orbital electron populations 1.69974 1.05524 1.26389 1.50223 1.25170 0.95038 0.98847 0.99425 0.86443 0.79676 0.83351 0.78277 1.20956 1.21225 1.20067 1.19112 0.94595 0.85435 1.40348 0.91703 1.43826 1.51150 1.03302 1.30532 1.20803 0.96025 0.88563 0.91363 1.22340 1.04397 0.89878 1.00442 1.24354 0.78217 0.88666 0.76639 1.90671 1.30935 1.56503 1.63473 1.84649 1.60025 1.42479 1.46394 1.19986 0.89739 1.03942 0.81035 1.22331 0.99145 0.93517 0.98791 1.21462 0.92182 1.00938 0.91218 1.21789 1.04626 0.95296 0.99930 1.18052 0.95425 0.89853 0.84626 1.91554 1.79667 1.92826 1.46543 1.66891 1.10158 1.37449 1.08823 1.22389 0.95362 0.95482 0.90101 0.93056 0.92621 0.93530 0.88444 0.87346 0.74408 0.94000 0.87147 0.83886 0.84468 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.84 11.47 55.49 0.64 -21.21 16 2 C 0.02 0.40 4.90 -17.43 -0.09 0.31 16 3 Si 0.89 19.22 29.61 -169.99 -5.03 14.19 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.27 -6.31 9.47 -15.06 -0.14 -6.45 16 8 H 0.07 1.59 7.92 -52.48 -0.42 1.17 16 9 N -0.57 -12.18 2.42 -174.61 -0.42 -12.60 16 10 C 0.16 3.06 4.97 -4.05 -0.02 3.04 16 11 C -0.13 -2.24 6.13 -27.89 -0.17 -2.41 16 12 C 0.48 7.67 8.33 36.00 0.30 7.97 16 13 O -0.53 -9.75 16.74 -18.75 -0.31 -10.07 16 14 O -0.52 -6.85 13.42 -39.27 -0.53 -7.37 16 15 C 0.18 3.56 5.38 -5.20 -0.03 3.53 16 16 C -0.13 -2.41 5.47 -104.48 -0.57 -2.98 16 17 C -0.03 -0.55 9.88 -39.29 -0.39 -0.94 16 18 C -0.20 -3.13 10.09 -39.36 -0.40 -3.53 16 19 C 0.27 4.81 8.41 -17.35 -0.15 4.67 16 20 F -0.13 -2.14 17.29 2.25 0.04 -2.10 16 21 N -0.52 -9.55 10.37 -13.59 -0.14 -9.69 16 22 C 0.12 2.14 10.77 -17.55 -0.19 1.95 16 23 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 24 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 25 H 0.05 0.86 7.97 -51.93 -0.41 0.45 16 26 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 27 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 28 H 0.40 3.32 9.10 45.56 0.41 3.73 16 29 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 30 H 0.11 2.46 5.48 -51.93 -0.28 2.18 16 31 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 32 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -27.68 301.72 -5.84 -33.52 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.78 Total: 5.64 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.84 Total: 5.15 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.07 Total: -43.50 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.84 Total: -17.44 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.68 -5.84 -33.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.953 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds