Wall clock time and date at job start Mon Mar 30 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86805 * 120.00216 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00076 * 3 2 1 5 5 H 1.48500 * 109.47038 * 29.99878 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.00069 * 3 2 1 7 7 C 1.38817 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00206 * 158.41814 * 7 2 1 9 9 N 1.36940 * 119.99792 * 338.41026 * 7 2 1 10 10 C 1.46496 * 119.99470 * 143.88648 * 9 7 2 11 11 C 1.52998 * 109.47452 * 270.00175 * 10 9 7 12 12 C 1.50691 * 109.47514 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00331 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00493 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00180 * 323.88779 * 9 7 2 16 16 C 1.50693 * 109.47393 * 263.98726 * 15 9 7 17 17 C 1.38752 * 120.38707 * 84.71912 * 16 15 9 18 18 C 1.38507 * 118.44955 * 180.02562 * 17 16 15 19 19 C 1.38560 * 119.13788 * 0.02562 * 18 17 16 20 20 F 1.35107 * 119.64743 * 180.02562 * 19 18 17 21 21 N 1.32026 * 120.70345 * 359.96927 * 19 18 17 22 22 C 1.31942 * 121.68548 * 0.05728 * 21 19 18 23 23 H 0.97001 * 120.00167 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47520 * 30.00176 * 10 9 7 25 25 H 1.09005 * 109.47332 * 150.00283 * 10 9 7 26 26 H 1.09004 * 109.47197 * 300.00754 * 11 10 9 27 27 H 1.09000 * 109.47146 * 60.00014 * 11 10 9 28 28 H 0.96697 * 117.00812 * 179.97438 * 14 12 11 29 29 H 1.09000 * 109.46852 * 143.98335 * 15 9 7 30 30 H 1.09004 * 109.47387 * 23.99106 * 15 9 7 31 31 H 1.07995 * 120.77280 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.42780 * 179.72015 * 18 17 16 33 33 H 1.08001 * 119.59826 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0334 -1.2352 -0.3435 9 7 1.3975 -2.3463 0.4374 10 6 1.6880 -3.6266 -0.2125 11 6 0.7074 -3.8472 -1.3661 12 6 1.0059 -5.1645 -2.0342 13 8 1.9104 -5.8559 -1.6297 14 8 0.2675 -5.5695 -3.0795 15 6 0.4516 -2.2899 1.5546 16 6 1.1654 -2.6380 2.8353 17 6 1.8558 -1.6633 3.5413 18 6 2.4979 -2.0277 4.7132 19 6 2.4302 -3.3448 5.1382 20 9 3.0524 -3.7114 6.2800 21 7 1.7633 -4.2450 4.4397 22 6 1.1412 -3.9312 3.3193 23 1 -0.4850 0.8400 -0.0004 24 1 2.7071 -3.6149 -0.5992 25 1 1.5837 -4.4341 0.5124 26 1 -0.3117 -3.8589 -0.9795 27 1 0.8117 -3.0399 -2.0909 28 1 0.4969 -6.4213 -3.4754 29 1 -0.3557 -3.0020 1.3834 30 1 0.0386 -1.2840 1.6307 31 1 1.8916 -0.6443 3.1854 32 1 3.0484 -1.2957 5.2856 33 1 0.6059 -4.6948 2.7745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:52 Heat of formation + Delta-G solvation = -100.726476 kcal Electronic energy + Delta-G solvation = -20108.788948 eV Core-core repulsion = 16662.998130 eV Total energy + Delta-G solvation = -3445.790818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97273 -41.17019 -40.94710 -37.85429 -36.97206 -33.92021 -33.82978 -32.67326 -30.91818 -27.49415 -26.47641 -24.76749 -23.90622 -22.60193 -21.33771 -19.12095 -19.00211 -18.67965 -18.12230 -17.38575 -17.02284 -16.96849 -16.69605 -16.09796 -15.50375 -15.37923 -15.25315 -14.65732 -14.35505 -14.12751 -13.98718 -13.84869 -13.38552 -13.14630 -12.85013 -12.60254 -12.46898 -12.32406 -12.13163 -11.99612 -11.68049 -11.51651 -10.84489 -10.66955 -10.49646 -9.75104 -8.66609 -7.89046 -5.44514 0.01438 0.23799 1.30423 1.48147 1.55238 1.61337 2.24542 2.53406 2.64750 2.69830 3.25072 3.62018 3.82085 3.99709 4.06178 4.11778 4.25520 4.27607 4.53774 4.69284 4.81630 4.88280 4.92180 5.03360 5.08305 5.27375 5.47833 5.65863 5.69497 5.71970 5.76262 6.45036 6.68538 7.09455 7.14038 7.77288 8.31515 9.10578 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.007800 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.677256 B = 3589.039188 C = 5579.246256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.015 4.015 3 Si 0.943 3.057 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.270 4.270 8 H 0.052 0.948 9 N -0.582 5.582 10 C 0.162 3.838 11 C -0.121 4.121 12 C 0.492 3.508 13 O -0.553 6.553 14 O -0.515 6.515 15 C 0.187 3.813 16 C -0.140 4.140 17 C -0.039 4.039 18 C -0.182 4.182 19 C 0.267 3.733 20 F -0.123 7.123 21 N -0.536 5.536 22 C 0.127 3.873 23 H 0.256 0.744 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.423 0.577 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -4.694 1.884 5.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.214 4.214 3 Si 0.771 3.229 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.400 4.400 8 H 0.070 0.930 9 N -0.300 5.300 10 C 0.036 3.964 11 C -0.162 4.162 12 C 0.336 3.664 13 O -0.444 6.444 14 O -0.328 6.328 15 C 0.061 3.939 16 C -0.145 4.145 17 C -0.066 4.066 18 C -0.203 4.203 19 C 0.113 3.887 20 F -0.103 7.103 21 N -0.251 5.251 22 C -0.030 4.030 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.284 0.716 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.158 0.842 32 H 0.186 0.814 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.498 -5.224 2.490 5.808 hybrid contribution 0.743 1.098 -0.495 1.416 sum 0.245 -4.126 1.994 4.589 Atomic orbital electron populations 1.70054 1.06271 1.26492 1.51513 1.25582 0.95494 1.00615 0.99701 0.85691 0.78731 0.80835 0.77633 1.21583 1.21367 1.19917 1.19134 0.94173 0.86562 1.40173 0.92997 1.43916 1.51260 1.03256 1.31602 1.20716 0.95649 0.87922 0.92105 1.22036 1.04105 0.90427 0.99601 1.23841 0.77766 0.87873 0.76903 1.90674 1.32074 1.57182 1.64477 1.84565 1.58988 1.44145 1.45141 1.19815 0.89828 1.02905 0.81381 1.22185 0.99561 0.94239 0.98554 1.21536 0.92414 1.00782 0.91827 1.21978 1.03766 0.95328 0.99251 1.18272 0.95353 0.90331 0.84711 1.91562 1.79554 1.92845 1.46314 1.66917 1.10775 1.38085 1.09274 1.22598 0.95028 0.95519 0.89820 0.93414 0.94218 0.92711 0.87685 0.88728 0.71556 0.92835 0.89503 0.84186 0.81440 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.88 11.47 21.65 0.25 -44.63 16 2 C -0.01 -0.70 4.90 84.86 0.42 -0.28 16 3 Si 0.94 39.50 29.61 68.60 2.03 41.53 16 4 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.27 -12.91 9.47 84.03 0.80 -12.11 16 8 H 0.05 2.57 7.92 -2.91 -0.02 2.55 16 9 N -0.58 -24.74 2.42 -706.36 -1.71 -26.45 16 10 C 0.16 6.17 4.97 86.38 0.43 6.60 16 11 C -0.12 -4.08 6.13 29.84 0.18 -3.89 16 12 C 0.49 15.00 8.33 71.23 0.59 15.59 16 13 O -0.55 -19.72 16.74 21.95 0.37 -19.35 16 14 O -0.52 -12.15 13.42 -51.44 -0.69 -12.84 16 15 C 0.19 7.33 5.38 85.63 0.46 7.79 16 16 C -0.14 -4.97 5.47 -19.78 -0.11 -5.07 16 17 C -0.04 -1.32 9.88 22.46 0.22 -1.10 16 18 C -0.18 -5.48 10.09 22.41 0.23 -5.25 16 19 C 0.27 8.86 8.41 84.74 0.71 9.58 16 20 F -0.12 -3.93 17.29 44.97 0.78 -3.15 16 21 N -0.54 -18.86 10.37 -196.91 -2.04 -20.91 16 22 C 0.13 4.21 10.77 84.64 0.91 5.12 16 23 H 0.26 12.49 8.31 -92.71 -0.77 11.72 16 24 H 0.04 1.61 8.00 -2.39 -0.02 1.60 16 25 H 0.05 1.97 7.97 -2.38 -0.02 1.95 16 26 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 27 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.42 5.77 9.10 -74.06 -0.67 5.09 16 29 H 0.05 1.92 8.03 -2.39 -0.02 1.90 16 30 H 0.09 3.89 5.48 -2.39 -0.01 3.88 16 31 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -57.47 301.72 4.30 -53.18 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.47 Total: 15.66 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 4.84 Total: 16.96 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.51 Total: -91.99 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.32 Total: -32.19 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -57.47 4.30 -53.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.547 kcal (2) G-P(sol) polarization free energy of solvation -57.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds