Wall clock time and date at job start Mon Mar 30 2020 01:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47570 * 2 1 4 4 N 1.29428 * 124.80026 * 90.02322 * 3 2 1 5 5 C 1.30945 * 117.36126 * 180.02562 * 4 3 2 6 6 C 1.35670 * 114.18882 * 0.02562 * 5 4 3 7 7 C 1.46680 * 126.12576 * 180.02562 * 6 5 4 8 8 O 1.21686 * 120.00180 * 352.05078 * 7 6 5 9 9 N 1.34776 * 119.99799 * 172.05290 * 7 6 5 10 10 C 1.46504 * 120.00231 * 1.31201 * 9 7 6 11 11 C 1.46498 * 120.00066 * 181.30812 * 9 7 6 12 12 H 1.08998 * 109.47185 * 0.02562 * 11 9 7 13 13 C 1.53007 * 109.47160 * 120.00234 * 11 9 7 14 14 C 1.50700 * 109.47437 * 239.99978 * 11 9 7 15 15 H 1.08007 * 119.99770 * 0.02562 * 14 11 9 16 16 C 1.37878 * 120.00302 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00019 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 119.99965 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47382 * 59.99780 * 18 16 14 20 20 H 1.48509 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47330 * 299.99566 * 18 16 14 22 22 S 1.70947 * 124.80406 * 270.34219 * 3 2 1 23 23 H 1.08999 * 109.47201 * 300.00363 * 1 2 3 24 24 H 1.09004 * 109.46733 * 60.00012 * 1 2 3 25 25 H 1.09001 * 109.47739 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46547 * 239.99830 * 2 1 3 27 27 H 1.08998 * 109.46849 * 120.00412 * 2 1 3 28 28 H 1.07997 * 122.90800 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47308 * 83.63356 * 10 9 7 30 30 H 1.09007 * 109.46678 * 323.63765 * 10 9 7 31 31 H 1.08997 * 109.47192 * 203.63748 * 10 9 7 32 32 H 1.09007 * 109.46552 * 300.00206 * 13 11 9 33 33 H 1.08998 * 109.47072 * 59.99930 * 13 11 9 34 34 H 1.08993 * 109.47350 * 180.02562 * 13 11 9 35 35 H 0.96993 * 120.00195 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2791 2.1170 1.0628 5 6 2.7115 3.3414 0.8933 6 6 2.8404 3.7105 -0.4059 7 6 3.3013 5.0152 -0.8925 8 8 3.4717 5.9310 -0.1096 9 7 3.5360 5.1996 -2.2068 10 6 3.3033 4.1057 -3.1531 11 6 4.0238 6.4940 -2.6892 12 1 4.1361 7.1768 -1.8470 13 6 5.3779 6.3051 -3.3760 14 6 3.0372 7.0676 -3.6734 15 1 2.1365 6.5226 -3.9151 16 6 3.2841 8.2881 -4.2654 17 7 4.3805 8.9520 -3.9708 18 14 2.0608 8.9994 -5.4847 19 1 0.7470 9.1835 -4.8176 20 1 2.5559 10.3109 -5.9748 21 1 1.9073 8.0689 -6.6319 22 16 2.3498 2.3434 -1.4036 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.9445 4.0006 1.7163 29 1 2.2493 4.0826 -3.4297 30 1 3.5778 3.1587 -2.6883 31 1 3.9097 4.2618 -4.0452 32 1 6.0915 5.8901 -2.6641 33 1 5.2660 5.6222 -4.2182 34 1 5.7410 7.2681 -3.7345 35 1 4.5541 9.8108 -4.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:24 Heat of formation + Delta-G solvation = 7.836083 kcal Electronic energy + Delta-G solvation = -18227.785140 eV Core-core repulsion = 15352.915124 eV Total energy + Delta-G solvation = -2874.870016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84449 -38.78470 -35.46482 -34.09571 -32.97375 -30.32936 -28.84937 -26.62804 -25.80699 -25.25136 -23.11343 -22.08290 -19.92685 -18.45771 -17.97905 -16.67267 -15.90627 -15.81785 -15.18569 -14.92974 -14.44980 -14.30193 -13.80939 -13.74235 -13.11785 -12.75256 -12.69474 -12.35174 -12.01387 -11.91157 -11.64493 -11.36975 -11.31319 -11.09262 -10.89954 -10.76312 -10.33787 -10.22641 -9.49297 -9.33887 -9.23732 -9.12170 -8.76378 -8.48550 -7.73013 -6.12486 -4.21209 0.46026 1.35097 1.77365 2.71395 3.25252 3.30725 3.32199 3.70720 3.75642 4.10150 4.35679 4.78369 4.96656 5.00610 5.07660 5.19615 5.41535 5.44155 5.53243 5.58032 5.72744 5.80892 5.94108 6.08835 6.26028 6.68036 6.73476 6.95635 7.28052 7.39887 7.63607 7.77287 7.93205 8.09847 8.35265 8.71781 8.88085 9.45331 10.92915 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.031178 B = 0.004926 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.867188 B = 5682.496382 C = 6027.093555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.010 3.990 4 N -0.482 5.482 5 C 0.103 3.897 6 C -0.275 4.275 7 C 0.578 3.422 8 O -0.536 6.536 9 N -0.583 5.583 10 C 0.076 3.924 11 C 0.259 3.741 12 H 0.067 0.933 13 C -0.148 4.148 14 C -0.529 4.529 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.194 5.806 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.184 0.816 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.013 0.987 33 H 0.031 0.969 34 H 0.097 0.903 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -17.034 2.384 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.264 4.264 4 N -0.196 5.196 5 C -0.054 4.054 6 C -0.399 4.399 7 C 0.363 3.637 8 O -0.415 6.415 9 N -0.313 5.313 10 C -0.070 4.070 11 C 0.160 3.840 12 H 0.085 0.915 13 C -0.207 4.207 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.452 5.548 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.201 0.799 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.115 0.885 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.084 -16.832 2.154 17.454 hybrid contribution -0.441 0.952 0.004 1.049 sum -4.525 -15.880 2.158 16.653 Atomic orbital electron populations 1.21770 0.93565 1.02379 1.02825 1.20193 0.96638 0.87909 1.04000 1.27951 1.01524 1.02455 0.94454 1.66240 1.15207 1.06088 1.32083 1.22077 0.96346 0.91364 0.95564 1.26129 1.15435 1.00685 0.97686 1.16826 0.78676 0.85015 0.83149 1.90796 1.53826 1.41755 1.55165 1.48171 1.63205 1.15200 1.04755 1.21809 1.02164 0.87972 0.95084 1.19053 0.91604 0.77789 0.95588 0.91508 1.22123 0.97183 1.03113 0.98245 1.21250 1.05990 1.04544 1.24977 0.92252 1.24883 0.95555 0.96460 0.96740 1.69859 1.24852 1.14594 1.43157 0.86524 0.81322 0.78291 0.81076 1.20199 1.21103 1.20179 1.84446 1.57370 1.03886 1.09127 0.91967 0.92272 0.91503 0.89744 0.89159 0.79906 0.92256 0.92752 0.88672 0.96790 0.94993 0.88502 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.16 0.37 -0.79 16 2 C -0.05 -0.41 6.51 -27.88 -0.18 -0.59 16 3 C 0.01 0.13 6.64 -13.29 -0.09 0.04 16 4 N -0.48 -7.32 10.51 -11.50 -0.12 -7.44 16 5 C 0.10 1.70 11.10 -18.85 -0.21 1.49 16 6 C -0.28 -4.81 6.26 -37.09 -0.23 -5.05 16 7 C 0.58 12.56 7.64 -12.85 -0.10 12.46 16 8 O -0.54 -13.54 16.20 5.20 0.08 -13.45 16 9 N -0.58 -12.57 2.75 -176.81 -0.49 -13.05 16 10 C 0.08 1.26 8.18 59.85 0.49 1.75 16 11 C 0.26 6.56 2.63 -69.08 -0.18 6.37 16 12 H 0.07 1.96 6.90 -51.93 -0.36 1.60 16 13 C -0.15 -3.47 8.96 37.16 0.33 -3.13 16 14 C -0.53 -14.08 8.37 -34.44 -0.29 -14.37 16 15 H 0.06 1.55 7.65 -52.48 -0.40 1.15 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 S 0.19 2.54 18.11 -107.50 -1.95 0.59 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.18 2.89 8.06 -52.49 -0.42 2.46 16 29 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 30 H 0.06 0.78 4.48 -22.82 -0.10 0.68 16 31 H 0.09 1.56 6.44 -51.93 -0.33 1.23 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 34 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -31.01 302.55 -6.85 -37.86 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.36 Total: -0.58 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.18 Total: -0.13 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.02 Total: -44.56 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.95 Total: 0.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.01 -6.85 -37.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.697 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds