Wall clock time and date at job start Mon Mar 30 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.53000 * 109.47378 * 89.99779 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.33391 * 125.19937 * 90.00083 * 5 4 3 7 7 C 1.38423 * 114.92045 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.91979 * 359.97438 * 7 6 5 9 9 S 1.75878 * 125.20693 * 269.69344 * 5 4 3 10 10 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 11 11 O 1.21579 * 119.99974 * 180.02562 * 10 2 1 12 12 N 1.34774 * 119.99906 * 0.02562 * 10 2 1 13 13 C 1.46499 * 119.99966 * 179.97438 * 12 10 2 14 14 C 1.50697 * 109.47273 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99802 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99568 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46968 * 90.00542 * 18 16 14 20 20 H 1.48500 * 109.47009 * 209.99720 * 18 16 14 21 21 H 1.48496 * 109.47662 * 330.00461 * 18 16 14 22 22 H 1.08997 * 109.46809 * 89.99883 * 1 2 3 23 23 H 1.08997 * 109.47355 * 210.00390 * 1 2 3 24 24 H 1.09005 * 109.47024 * 330.01005 * 1 2 3 25 25 H 1.09000 * 109.47518 * 329.99267 * 3 2 1 26 26 H 1.09008 * 109.47096 * 209.99944 * 3 2 1 27 27 H 1.09000 * 109.46884 * 60.00202 * 4 3 2 28 28 H 1.09000 * 109.46955 * 299.99518 * 4 3 2 29 29 H 1.07995 * 122.54106 * 359.95411 * 6 5 4 30 30 H 1.08001 * 122.53959 * 180.02562 * 7 6 5 31 31 H 1.07998 * 125.20163 * 180.02562 * 8 7 6 32 32 H 0.96999 * 120.00050 * 359.97438 * 12 10 2 33 33 H 1.09002 * 109.47352 * 299.99897 * 13 12 10 34 34 H 1.09005 * 109.47136 * 59.99929 * 13 12 10 35 35 H 0.97005 * 119.99358 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2065 3.0153 1.4424 6 6 2.6475 4.2264 1.4422 7 6 3.5428 5.2821 1.4427 8 6 4.8289 4.9283 1.4439 9 16 4.9581 3.1742 1.4503 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1974 -3.6031 0.0005 14 6 1.2181 -4.7485 0.0012 15 1 0.1563 -4.5511 0.0011 16 6 1.6777 -6.0485 0.0018 17 7 0.8230 -7.0481 0.0018 18 14 3.5142 -6.3898 0.0012 19 1 4.0015 -6.4794 1.4011 20 1 3.7790 -7.6728 -0.6981 21 1 4.2222 -5.2887 -0.6998 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6085 2.0284 -0.5139 26 1 3.1500 1.1384 -0.5139 27 1 3.0416 0.9509 1.9563 28 1 1.5000 1.8409 1.9562 29 1 1.5774 4.3723 1.4413 30 1 3.2242 6.3141 1.4430 31 1 5.6633 5.6140 1.4449 32 1 0.4950 -2.3343 0.0005 33 1 2.8241 -3.6609 -0.8895 34 1 2.8241 -3.6609 0.8905 35 1 1.1463 -7.9626 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426431111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:57 Heat of formation + Delta-G solvation = 5.132940 kcal Electronic energy + Delta-G solvation = -17572.275603 eV Core-core repulsion = 14697.288369 eV Total energy + Delta-G solvation = -2874.987233 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67437 -38.07237 -35.66839 -34.33694 -32.83563 -32.01589 -28.55640 -27.59977 -26.27124 -24.33866 -22.63574 -21.59595 -19.46887 -19.37030 -17.96875 -17.29143 -16.40023 -15.96827 -15.64454 -15.18800 -14.48685 -14.21456 -13.73491 -13.51864 -13.10899 -13.05413 -12.92967 -12.57913 -12.35737 -12.25205 -12.18759 -11.98017 -11.95177 -11.04905 -10.94207 -10.74851 -10.68920 -9.94780 -9.54720 -9.44085 -8.94146 -8.75878 -8.60159 -8.45681 -7.96082 -6.19683 -4.21441 0.85918 1.52253 1.91801 2.58071 3.10244 3.29323 3.36267 3.45245 3.76679 4.35697 4.59160 4.74031 4.89568 5.00939 5.15833 5.16552 5.18963 5.31410 5.37422 5.50617 5.56856 5.71607 5.77058 6.00243 6.05888 6.13710 6.36350 6.63337 6.82552 7.13407 7.25644 7.39677 7.50448 8.26858 8.67138 8.80714 9.19535 9.41965 10.92301 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.003659 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.661836 B = 7650.324272 C = 8307.394145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.642 5.642 3 C 0.144 3.856 4 C -0.069 4.069 5 C -0.162 4.162 6 C -0.147 4.147 7 C -0.134 4.134 8 C -0.225 4.225 9 S 0.111 5.889 10 C 0.695 3.305 11 O -0.599 6.599 12 N -0.722 5.722 13 C 0.237 3.763 14 C -0.542 4.542 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.393 0.607 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 23.579 2.383 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.380 5.380 3 C 0.019 3.981 4 C -0.109 4.109 5 C -0.280 4.280 6 C -0.177 4.177 7 C -0.165 4.165 8 C -0.361 4.361 9 S 0.375 5.625 10 C 0.396 3.604 11 O -0.479 6.479 12 N -0.375 5.375 13 C 0.114 3.886 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.228 0.772 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.691 22.296 2.377 22.724 hybrid contribution -0.835 0.773 0.071 1.140 sum 2.856 23.069 2.448 23.373 Atomic orbital electron populations 1.21691 0.80114 1.02848 1.01628 1.47041 1.06125 1.04954 1.79918 1.21176 0.98056 0.83923 0.94936 1.20614 0.99486 0.91662 0.99158 1.24475 0.96358 0.98829 1.08330 1.20108 1.01083 0.91024 1.05522 1.20136 0.92181 1.00338 1.03854 1.25655 1.00873 0.98399 1.11176 1.84645 1.04300 1.01501 1.72095 1.16084 0.85476 0.80566 0.78275 1.90857 1.11739 1.86344 1.58916 1.45547 1.09927 1.04979 1.77050 1.19367 0.92908 0.79646 0.96643 1.21086 0.94348 0.89367 1.53178 0.90364 1.24781 0.98179 0.95774 0.93882 1.69885 1.34424 0.99193 1.49593 0.86811 0.85495 0.78294 0.79070 1.19849 1.20937 1.18411 0.92820 0.91074 0.91328 0.90709 0.89710 0.89977 0.89981 0.84409 0.84573 0.82163 0.77236 0.95898 0.96382 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.20 59.85 0.61 1.50 16 2 N -0.64 -9.57 2.87 -187.35 -0.54 -10.11 16 3 C 0.14 1.85 5.39 -4.04 -0.02 1.83 16 4 C -0.07 -0.82 6.03 -27.88 -0.17 -0.98 16 5 C -0.16 -1.80 5.76 -36.00 -0.21 -2.01 16 6 C -0.15 -1.41 10.05 -41.21 -0.41 -1.83 16 7 C -0.13 -1.20 10.18 -41.21 -0.42 -1.62 16 8 C -0.23 -2.08 11.23 29.04 0.33 -1.76 16 9 S 0.11 1.25 23.33 -107.50 -2.51 -1.26 16 10 C 0.69 14.03 8.28 -86.92 -0.72 13.31 16 11 O -0.60 -14.29 15.92 5.30 0.08 -14.21 16 12 N -0.72 -15.21 5.41 -66.42 -0.36 -15.57 16 13 C 0.24 5.97 4.50 -5.20 -0.02 5.95 16 14 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 15 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 24 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 25 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 26 H 0.08 1.28 7.42 -51.92 -0.39 0.90 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.39 7.30 6.05 -40.82 -0.25 7.05 16 33 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 34 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -32.94 312.14 -8.67 -41.61 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.68 Total: 2.55 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.47 Total: 1.15 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.12 Total: -51.55 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.94 -8.67 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426431111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.745 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds