Wall clock time and date at job start Mon Mar 30 2020 01:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.53000 * 109.47378 * 89.99779 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.33391 * 125.19937 * 90.00083 * 5 4 3 7 7 C 1.38423 * 114.92045 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.91979 * 359.97438 * 7 6 5 9 9 S 1.75878 * 125.20693 * 269.69344 * 5 4 3 10 10 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 11 11 O 1.21579 * 119.99974 * 180.02562 * 10 2 1 12 12 N 1.34774 * 119.99906 * 0.02562 * 10 2 1 13 13 C 1.46499 * 119.99966 * 179.97438 * 12 10 2 14 14 C 1.50697 * 109.47273 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99869 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00234 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99802 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99568 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46968 * 90.00542 * 18 16 14 20 20 H 1.48500 * 109.47009 * 209.99720 * 18 16 14 21 21 H 1.48496 * 109.47662 * 330.00461 * 18 16 14 22 22 H 1.08997 * 109.46809 * 89.99883 * 1 2 3 23 23 H 1.08997 * 109.47355 * 210.00390 * 1 2 3 24 24 H 1.09005 * 109.47024 * 330.01005 * 1 2 3 25 25 H 1.09000 * 109.47518 * 329.99267 * 3 2 1 26 26 H 1.09008 * 109.47096 * 209.99944 * 3 2 1 27 27 H 1.09000 * 109.46884 * 60.00202 * 4 3 2 28 28 H 1.09000 * 109.46955 * 299.99518 * 4 3 2 29 29 H 1.07995 * 122.54106 * 359.95411 * 6 5 4 30 30 H 1.08001 * 122.53959 * 180.02562 * 7 6 5 31 31 H 1.07998 * 125.20163 * 180.02562 * 8 7 6 32 32 H 0.96999 * 120.00050 * 359.97438 * 12 10 2 33 33 H 1.09002 * 109.47352 * 299.99897 * 13 12 10 34 34 H 1.09005 * 109.47136 * 59.99929 * 13 12 10 35 35 H 0.97005 * 119.99358 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2065 3.0153 1.4424 6 6 2.6475 4.2264 1.4422 7 6 3.5428 5.2821 1.4427 8 6 4.8289 4.9283 1.4439 9 16 4.9581 3.1742 1.4503 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1672 0.0010 12 7 1.4650 -2.3344 0.0005 13 6 2.1974 -3.6031 0.0005 14 6 1.2181 -4.7485 0.0012 15 1 0.1563 -4.5511 0.0011 16 6 1.6777 -6.0485 0.0018 17 7 0.8230 -7.0481 0.0018 18 14 3.5142 -6.3898 0.0012 19 1 4.0015 -6.4794 1.4011 20 1 3.7790 -7.6728 -0.6981 21 1 4.2222 -5.2887 -0.6998 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.6085 2.0284 -0.5139 26 1 3.1500 1.1384 -0.5139 27 1 3.0416 0.9509 1.9563 28 1 1.5000 1.8409 1.9562 29 1 1.5774 4.3723 1.4413 30 1 3.2242 6.3141 1.4430 31 1 5.6633 5.6140 1.4449 32 1 0.4950 -2.3343 0.0005 33 1 2.8241 -3.6609 -0.8895 34 1 2.8241 -3.6609 0.8905 35 1 1.1463 -7.9626 0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426431111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:56 Heat of formation + Delta-G solvation = -16.455329 kcal Electronic energy + Delta-G solvation = -17573.211740 eV Core-core repulsion = 14697.288369 eV Total energy + Delta-G solvation = -2875.923371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16187 -38.87205 -36.97458 -36.16728 -34.55457 -33.39345 -30.07384 -28.89747 -27.33548 -25.45899 -23.98227 -23.06573 -21.09132 -20.10744 -19.47922 -18.35310 -18.15466 -17.40894 -16.72696 -16.44760 -16.21122 -15.44078 -15.19294 -14.90486 -14.60950 -14.34751 -14.04628 -13.79894 -13.65379 -13.37532 -13.13313 -13.01897 -12.98067 -12.89167 -12.70221 -11.93384 -11.91810 -11.64383 -11.53234 -11.20933 -10.91777 -10.15085 -9.73146 -9.43485 -9.31151 -8.40146 -6.46693 0.10236 0.73757 1.17308 1.32961 1.34941 1.48599 1.74856 1.91025 2.18250 2.28691 2.95492 3.17887 3.88900 3.97992 4.19941 4.28150 4.32715 4.49934 4.54608 4.69488 4.73579 4.75497 4.89704 4.91653 5.04228 5.06847 5.23795 5.26665 5.39850 5.54396 5.60575 5.65696 5.92349 6.19519 6.54476 7.09226 7.19709 7.63516 8.74551 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.035182 B = 0.003659 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.661836 B = 7650.324272 C = 8307.394145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.631 5.631 3 C 0.143 3.857 4 C -0.057 4.057 5 C -0.180 4.180 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.215 4.215 9 S 0.045 5.955 10 C 0.690 3.310 11 O -0.642 6.642 12 N -0.722 5.722 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.060 0.940 16 C 0.029 3.971 17 N -0.930 5.930 18 Si 0.936 3.064 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.263 1.263 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.183 0.817 32 H 0.404 0.596 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 26.150 2.475 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.368 5.368 3 C 0.020 3.980 4 C -0.098 4.098 5 C -0.298 4.298 6 C -0.163 4.163 7 C -0.168 4.168 8 C -0.350 4.350 9 S 0.308 5.692 10 C 0.391 3.609 11 O -0.525 6.525 12 N -0.377 5.377 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.078 0.922 16 C -0.172 4.172 17 N -0.569 5.569 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.187 1.187 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.126 0.874 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.200 0.800 32 H 0.242 0.758 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.866 24.918 2.471 25.204 hybrid contribution -0.690 0.119 0.042 0.702 sum 2.176 25.037 2.513 25.257 Atomic orbital electron populations 1.22005 0.77201 1.04549 1.03127 1.47085 1.07888 1.03753 1.78067 1.21352 0.97264 0.83531 0.95887 1.20429 1.00017 0.91224 0.98081 1.24374 0.95474 0.99103 1.10837 1.20464 1.02539 0.90263 1.03065 1.20516 0.91743 1.01641 1.02901 1.25933 1.02094 0.96614 1.10398 1.84901 1.06157 1.04633 1.73524 1.16267 0.85048 0.81558 0.78008 1.90824 1.13824 1.87167 1.60695 1.45266 1.10383 1.04274 1.77759 1.18939 0.92241 0.80815 0.95338 1.21250 0.93993 0.90366 1.52632 0.92201 1.25553 1.02375 0.95695 0.93569 1.69976 1.36406 0.99802 1.50694 0.85877 0.80324 0.78341 0.79474 1.18985 1.19625 1.18705 0.91388 0.91602 0.87446 0.86916 0.92681 0.93493 0.87704 0.81776 0.81599 0.80012 0.75830 0.97371 0.97501 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 10.20 127.77 1.30 2.69 16 2 N -0.63 -17.96 2.87 -864.92 -2.49 -20.44 16 3 C 0.14 3.48 5.39 86.38 0.47 3.95 16 4 C -0.06 -1.29 6.03 29.85 0.18 -1.11 16 5 C -0.18 -3.77 5.76 24.59 0.14 -3.63 16 6 C -0.13 -2.11 10.05 21.22 0.21 -1.89 16 7 C -0.14 -1.99 10.18 21.22 0.22 -1.77 16 8 C -0.22 -3.54 11.23 66.72 0.75 -2.79 16 9 S 0.04 1.02 23.33 -56.49 -1.32 -0.30 16 10 C 0.69 27.99 8.28 179.06 1.48 29.48 16 11 O -0.64 -31.53 15.92 -3.96 -0.06 -31.59 16 12 N -0.72 -30.60 5.41 -482.31 -2.61 -33.21 16 13 C 0.25 12.83 4.50 85.63 0.38 13.22 16 14 C -0.54 -30.58 9.83 25.60 0.25 -30.33 16 15 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 16 C 0.03 1.63 5.47 84.66 0.46 2.10 16 17 N -0.93 -55.85 13.96 21.45 0.30 -55.55 16 18 Si 0.94 44.91 27.47 68.60 1.88 46.80 16 19 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.26 -12.65 6.54 99.48 0.65 -12.00 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.35 6.36 -2.39 -0.02 1.33 16 24 H 0.11 1.26 8.07 -2.38 -0.02 1.24 16 25 H 0.11 1.90 8.07 -2.39 -0.02 1.88 16 26 H 0.05 1.69 7.42 -2.38 -0.02 1.67 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.40 14.95 6.05 -92.71 -0.56 14.39 16 33 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 34 H 0.01 0.38 7.57 -2.38 -0.02 0.36 16 35 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -72.99 312.14 2.03 -70.96 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.48 Total: 13.44 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.85 Total: 9.90 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.80 Total: -109.21 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.06 Total: -31.59 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -1.32 Total: -0.30 kcal Total: -72.99 2.03 -70.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426431111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.500 kcal (2) G-P(sol) polarization free energy of solvation -72.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds