Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21248 * 119.99698 * 2 1 4 4 C 1.47188 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.40000 * 120.10272 * 5.76674 * 4 2 1 6 6 C 1.38020 * 120.13775 * 180.02562 * 5 4 2 7 7 C 1.38104 * 120.34063 * 359.76829 * 6 5 4 8 8 C 1.39794 * 120.18852 * 0.51075 * 7 6 5 9 9 C 1.47822 * 120.06713 * 179.73858 * 8 7 6 10 10 N 1.32857 * 120.24755 * 44.05060 * 9 8 7 11 11 C 1.32007 * 120.07864 * 179.97438 * 10 9 8 12 12 C 1.39189 * 120.58651 * 0.02562 * 11 10 9 13 13 N 1.31597 * 120.50585 * 359.97438 * 12 11 10 14 14 C 1.33973 * 119.89888 * 359.97438 * 13 12 11 15 15 C 1.40806 * 120.28833 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00572 * 189.60383 * 15 14 13 17 17 C 1.40174 * 119.99730 * 9.60363 * 15 14 13 18 18 N 1.30685 * 120.00387 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99947 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47244 * 89.99743 * 19 17 15 21 21 H 1.48498 * 109.47328 * 210.00279 * 19 17 15 22 22 H 1.48501 * 109.47124 * 330.00209 * 19 17 15 23 23 C 1.39399 * 119.86264 * 359.46707 * 8 7 6 24 24 H 1.08995 * 109.47062 * 174.88363 * 1 2 3 25 25 H 1.09006 * 109.46646 * 294.87675 * 1 2 3 26 26 H 1.09000 * 109.47476 * 54.87303 * 1 2 3 27 27 H 1.08001 * 119.92761 * 0.02570 * 5 4 2 28 28 H 1.08010 * 119.83055 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.90373 * 180.27686 * 7 6 5 30 30 H 1.07995 * 119.70348 * 180.02562 * 11 10 9 31 31 H 1.08010 * 119.74673 * 179.72276 * 12 11 10 32 32 H 0.97000 * 120.00267 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.16491 * 180.29591 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5504 -2.4853 -0.1228 6 6 2.2397 -3.6810 -0.1229 7 6 3.6159 -3.6930 -0.0074 8 6 4.3209 -2.4927 0.1212 9 6 5.7934 -2.5090 0.2504 10 7 6.5251 -3.2960 -0.5308 11 6 7.8399 -3.3075 -0.4129 12 6 8.4738 -2.4998 0.5269 13 7 7.7715 -1.7115 1.3125 14 6 6.4361 -1.6833 1.2091 15 6 5.6767 -0.8425 2.0451 16 1 4.6008 -0.9336 2.0691 17 6 6.3171 0.1129 2.8463 18 7 7.6190 0.2230 2.8177 19 14 5.3096 1.2290 3.9549 20 1 5.1445 0.5880 5.2842 21 1 6.0089 2.5291 4.1157 22 1 3.9745 1.4569 3.3461 23 6 3.6331 -1.2803 0.1218 24 1 -0.3633 -1.0235 -0.0916 25 1 -0.3633 0.4323 0.9324 26 1 -0.3634 0.5913 -0.8405 27 1 0.4746 -2.4834 -0.2172 28 1 1.7005 -4.6120 -0.2179 29 1 4.1485 -4.6325 -0.0128 30 1 8.4288 -3.9493 -1.0513 31 1 9.5501 -2.5233 0.6148 32 1 8.0622 0.8839 3.3724 33 1 4.1733 -0.3499 0.2161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239632698.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = 7.462136 kcal Electronic energy + Delta-G solvation = -19425.847971 eV Core-core repulsion = 16415.517788 eV Total energy + Delta-G solvation = -3010.330183 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25768 -40.54141 -38.90113 -36.08828 -34.45767 -33.37144 -32.46792 -30.95634 -29.86224 -28.06203 -25.30964 -24.25824 -23.86978 -22.55576 -20.44147 -19.64828 -18.22588 -17.97215 -16.99475 -16.64691 -16.38046 -16.25240 -15.95275 -15.83749 -15.22467 -14.72369 -14.64127 -14.46386 -13.77278 -13.53433 -13.36227 -13.08297 -12.99035 -12.91848 -12.55149 -12.53540 -12.12288 -11.95552 -11.68308 -11.56559 -11.13286 -10.70595 -10.18640 -9.82517 -9.50402 -9.22441 -8.51297 -6.70129 -0.23903 0.18779 0.72615 1.10583 1.28969 1.40684 1.45627 1.55993 2.08976 2.65998 2.94364 3.16249 3.67563 3.73171 4.05170 4.11673 4.15002 4.16679 4.34929 4.41571 4.60663 4.62999 4.71745 4.72523 4.85024 5.00331 5.03797 5.12810 5.16869 5.24514 5.43419 5.55116 5.71809 5.78974 6.02318 6.06727 6.39004 6.62307 6.63404 7.23048 7.81613 8.17446 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.009020 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.528765 B = 3103.349790 C = 4728.038496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.390 3.610 3 O -0.514 6.514 4 C -0.194 4.194 5 C -0.066 4.066 6 C -0.124 4.124 7 C -0.084 4.084 8 C -0.021 4.021 9 C -0.047 4.047 10 N -0.425 5.425 11 C -0.117 4.117 12 C 0.075 3.925 13 N -0.488 5.488 14 C 0.189 3.811 15 C -0.424 4.424 16 H 0.098 0.902 17 C 0.026 3.974 18 N -0.740 5.740 19 Si 0.976 3.024 20 H -0.250 1.250 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.067 4.067 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.183 0.817 28 H 0.170 0.830 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.288 0.712 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 -3.766 -1.875 14.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.272 3.728 3 O -0.393 6.393 4 C -0.195 4.195 5 C -0.084 4.084 6 C -0.142 4.142 7 C -0.103 4.103 8 C -0.023 4.023 9 C -0.193 4.193 10 N -0.137 5.137 11 C -0.278 4.278 12 C -0.095 4.095 13 N -0.205 5.205 14 C 0.064 3.936 15 C -0.455 4.455 16 H 0.116 0.884 17 C -0.199 4.199 18 N -0.361 5.361 19 Si 0.795 3.205 20 H -0.174 1.174 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.086 4.086 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.139 0.861 30 H 0.183 0.817 31 H 0.180 0.820 32 H 0.099 0.901 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.125 -3.087 -1.769 13.598 hybrid contribution 0.921 0.532 0.384 1.131 sum -12.203 -2.555 -1.385 12.544 Atomic orbital electron populations 1.22259 0.89028 1.07238 1.05885 1.23354 0.94049 0.86522 0.68898 1.90535 1.73728 1.35921 1.39122 1.20708 0.93175 0.96950 1.08656 1.21900 1.01706 0.89590 0.95231 1.21429 0.92517 0.99914 1.00311 1.21642 0.95509 0.96501 0.96694 1.18360 0.90101 0.93821 0.99977 1.20548 0.93813 1.03964 1.00993 1.67764 1.07673 1.17109 1.21189 1.23170 0.91010 1.07667 1.05961 1.24094 1.01507 0.91779 0.92110 1.69455 1.06457 1.20260 1.24322 1.19645 0.89795 0.92054 0.92084 1.20064 0.95443 1.12396 1.17558 0.88444 1.27040 0.96153 0.98792 0.97887 1.70085 1.10632 1.26430 1.28925 0.85279 0.79037 0.77628 0.78562 1.17405 1.18398 1.18624 1.21511 0.94337 0.97318 0.95456 0.86467 0.87548 0.87651 0.80025 0.81249 0.86145 0.81665 0.82013 0.90088 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 10.19 71.24 0.73 -2.38 16 2 C 0.39 12.04 7.21 28.04 0.20 12.25 16 3 O -0.51 -21.18 17.10 -2.93 -0.05 -21.23 16 4 C -0.19 -6.45 5.86 -20.18 -0.12 -6.57 16 5 C -0.07 -1.56 9.44 22.65 0.21 -1.34 16 6 C -0.12 -3.12 10.01 22.19 0.22 -2.90 16 7 C -0.08 -3.01 9.67 22.61 0.22 -2.79 16 8 C -0.02 -0.95 5.28 -20.09 -0.11 -1.06 16 9 C -0.05 -2.48 6.41 42.44 0.27 -2.20 16 10 N -0.42 -21.24 10.30 -182.29 -1.88 -23.11 16 11 C -0.12 -5.36 11.22 84.90 0.95 -4.41 16 12 C 0.08 3.63 11.22 84.96 0.95 4.58 16 13 N -0.49 -27.56 8.11 -187.86 -1.52 -29.09 16 14 C 0.19 10.75 6.51 40.35 0.26 11.01 16 15 C -0.42 -23.37 7.48 23.37 0.17 -23.20 16 16 H 0.10 5.17 5.34 -2.91 -0.02 5.16 16 17 C 0.03 1.32 5.49 85.33 0.47 1.79 16 18 N -0.74 -39.78 11.54 21.86 0.25 -39.53 16 19 Si 0.98 39.39 29.56 68.60 2.03 41.42 16 20 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 23 C -0.07 -2.92 7.08 22.87 0.16 -2.76 16 24 H 0.12 1.09 5.62 -2.39 -0.01 1.08 16 25 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.18 2.19 5.93 -2.91 -0.02 2.17 16 28 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 30 H 0.17 6.16 8.06 -2.91 -0.02 6.14 16 31 H 0.16 6.49 8.06 -2.91 -0.02 6.47 16 32 H 0.29 13.84 8.29 -92.71 -0.77 13.08 16 33 H 0.10 5.19 6.34 -2.91 -0.02 5.17 16 Total: -1.00 -74.98 291.04 4.59 -70.40 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.15 Total: 21.11 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 4.60 Total: -19.98 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -3.15 Total: -91.73 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -74.98 4.59 -70.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239632698.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.857 kcal (2) G-P(sol) polarization free energy of solvation -74.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds