Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30661 * 1 3 3 Si 1.86810 * 119.99500 * 2 1 4 4 H 1.48498 * 109.46908 * 269.72551 * 3 2 1 5 5 H 1.48497 * 109.46933 * 29.72602 * 3 2 1 6 6 H 1.48500 * 109.46636 * 149.72708 * 3 2 1 7 7 C 1.40145 * 120.00348 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.41104 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.33640 * 119.13331 * 359.72759 * 9 7 2 11 11 C 1.31587 * 120.82776 * 179.71408 * 10 9 7 12 12 C 1.40425 * 119.09339 * 0.55107 * 11 10 9 13 13 C 1.47954 * 120.78789 * 179.70336 * 12 11 10 14 14 C 1.40014 * 120.94158 * 179.74646 * 13 12 11 15 15 N 1.32140 * 118.91453 * 179.73846 * 14 13 12 16 16 C 1.31884 * 120.96991 * 0.52809 * 15 14 13 17 17 C 1.50700 * 118.94008 * 179.72624 * 16 15 14 18 18 C 1.52997 * 117.50250 * 8.63989 * 17 16 15 19 19 C 1.53000 * 117.49800 * 300.01462 * 17 16 15 20 20 N 1.31874 * 122.11256 * 359.74245 * 16 15 14 21 21 C 1.32133 * 120.97728 * 359.97438 * 20 16 15 22 22 C 1.40418 * 118.41679 * 359.72783 * 12 11 10 23 23 N 1.31587 * 119.09508 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00059 * 0.27122 * 1 2 3 25 25 H 1.08006 * 120.45320 * 180.27490 * 11 10 9 26 26 H 1.07997 * 120.54543 * 359.97438 * 14 13 12 27 27 H 1.09000 * 115.54835 * 154.34657 * 17 16 15 28 28 H 1.09002 * 117.49997 * 359.97438 * 18 17 16 29 29 H 1.08997 * 117.50035 * 145.02391 * 18 17 16 30 30 H 1.09003 * 117.49861 * 214.98355 * 19 17 16 31 31 H 1.08994 * 117.49762 * 0.02562 * 19 17 16 32 32 H 1.08000 * 120.54458 * 179.97438 * 21 20 16 33 33 H 1.08005 * 120.45051 * 179.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6179 0.0000 4 1 2.4938 2.0432 -1.4001 5 1 1.4350 2.6544 0.6942 6 1 3.5352 1.4420 0.7058 7 6 2.0074 -1.2136 0.0058 8 1 3.0874 -1.2135 0.0054 9 6 1.3019 -2.4357 0.0111 10 7 -0.0343 -2.4155 0.0160 11 6 -0.7256 -3.5351 0.0154 12 6 -0.0402 -4.7608 0.0212 13 6 -0.7800 -6.0421 0.0273 14 6 -0.0999 -7.2660 0.0278 15 7 -0.8006 -8.3862 0.0386 16 6 -2.1193 -8.3620 0.0384 17 6 -2.8726 -9.6671 0.0447 18 6 -2.0639 -10.9487 0.2549 19 6 -2.6377 -10.6240 -1.1258 20 7 -2.7996 -7.2323 0.0325 21 6 -2.1800 -6.0653 0.0271 22 6 1.3638 -4.7412 0.0217 23 7 1.9876 -3.5826 0.0161 24 1 -0.4850 0.8400 -0.0040 25 1 -1.8054 -3.5118 0.0149 26 1 0.9797 -7.2940 0.0234 27 1 -3.8754 -9.6290 0.4702 28 1 -0.9867 -10.8480 0.3882 29 1 -2.5345 -11.7541 0.8188 30 1 -3.4859 -11.2158 -1.4701 31 1 -1.9380 -10.3097 -1.9001 32 1 -2.7442 -5.1443 0.0218 33 1 1.9241 -5.6646 0.0265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240685951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = 112.927001 kcal Electronic energy + Delta-G solvation = -18548.736558 eV Core-core repulsion = 15575.272426 eV Total energy + Delta-G solvation = -2973.464132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63952 -39.02774 -36.92249 -34.31696 -33.31588 -32.66650 -32.00467 -29.38509 -26.72381 -24.73645 -24.25438 -22.46567 -22.20914 -21.90291 -20.65506 -18.23863 -17.29263 -16.91535 -15.82917 -15.52279 -14.98016 -14.82766 -14.64794 -14.34485 -13.86500 -13.35157 -13.19100 -12.90012 -12.14122 -12.01907 -11.55230 -11.51908 -11.49279 -11.07031 -10.96495 -10.84518 -10.51915 -10.42739 -10.39388 -9.93114 -9.49538 -9.37671 -9.23440 -8.84181 -7.64197 -7.58523 -6.86945 -5.00280 1.03747 1.51904 2.49053 2.76207 2.88349 2.92143 2.96027 3.64166 3.75092 4.10097 4.25814 4.45515 4.54820 4.92843 5.01848 5.10099 5.17694 5.38059 5.45286 5.57241 5.62625 5.64523 5.66386 5.74483 5.94700 6.05290 6.06897 6.20494 6.31158 6.62059 6.74995 6.83697 7.03647 7.26045 7.49659 7.82919 8.14532 8.22755 8.53544 8.79604 9.76905 9.95412 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.062208 B = 0.003535 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.996511 B = 7917.952718 C = 8286.014178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.056 3.944 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.361 4.361 8 H 0.100 0.900 9 C 0.374 3.626 10 N -0.506 5.506 11 C 0.187 3.813 12 C -0.331 4.331 13 C -0.058 4.058 14 C 0.110 3.890 15 N -0.504 5.504 16 C 0.287 3.713 17 C -0.087 4.087 18 C -0.158 4.158 19 C -0.162 4.162 20 N -0.502 5.502 21 C 0.113 3.887 22 C 0.194 3.806 23 N -0.589 5.589 24 H 0.283 0.717 25 H 0.133 0.867 26 H 0.162 0.838 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -9.230 -0.279 9.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.174 4.174 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.393 4.393 8 H 0.118 0.882 9 C 0.143 3.857 10 N -0.221 5.221 11 C 0.009 3.991 12 C -0.342 4.342 13 C -0.064 4.064 14 C -0.057 4.057 15 N -0.216 5.216 16 C 0.021 3.979 17 C -0.107 4.107 18 C -0.196 4.196 19 C -0.201 4.201 20 N -0.214 5.214 21 C -0.055 4.055 22 C 0.018 3.982 23 N -0.307 5.307 24 H 0.094 0.906 25 H 0.150 0.850 26 H 0.179 0.821 27 H 0.140 0.860 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.180 0.820 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.500 -8.836 -0.256 9.508 hybrid contribution 0.199 0.739 -0.009 0.765 sum -3.302 -8.097 -0.265 8.749 Atomic orbital electron populations 1.70101 1.07576 1.29166 1.23909 1.26300 0.95222 1.02031 0.93798 0.86012 0.80399 0.79051 0.79759 1.18859 1.19612 1.17960 1.19647 0.95356 0.87835 1.36495 0.88202 1.19967 0.85990 0.90911 0.88805 1.69359 1.08085 1.26633 1.18040 1.23026 0.99116 0.87786 0.89190 1.19441 0.95219 0.92213 1.27367 1.20408 0.94851 0.94871 0.96276 1.23124 1.00285 0.86700 0.95586 1.67842 1.08596 1.31899 1.13294 1.21712 0.86665 0.92428 0.97077 1.20452 0.99276 0.85783 1.05219 1.22977 1.01156 0.96605 0.98876 1.22948 1.03267 1.01843 0.91994 1.67876 1.41971 0.98539 1.13032 1.23172 0.91413 0.95626 0.95262 1.22650 0.90281 0.95990 0.89294 1.68661 1.40651 0.98390 1.22962 0.90596 0.84975 0.82092 0.86040 0.87339 0.88670 0.88434 0.88768 0.81951 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.60 11.40 55.56 0.63 -15.96 16 2 C 0.06 1.30 5.50 -17.33 -0.10 1.20 16 3 Si 0.93 16.84 29.56 -169.99 -5.02 11.81 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.36 -9.11 9.35 -37.78 -0.35 -9.46 16 8 H 0.10 2.39 7.85 -52.49 -0.41 1.98 16 9 C 0.37 9.83 7.35 -158.18 -1.16 8.66 16 10 N -0.51 -12.99 7.83 -12.41 -0.10 -13.09 16 11 C 0.19 4.15 10.72 -16.83 -0.18 3.97 16 12 C -0.33 -6.80 5.94 -104.27 -0.62 -7.42 16 13 C -0.06 -1.05 5.91 -104.58 -0.62 -1.67 16 14 C 0.11 1.86 10.73 -16.75 -0.18 1.68 16 15 N -0.50 -8.47 9.32 -10.38 -0.10 -8.57 16 16 C 0.29 4.78 7.31 -157.05 -1.15 3.63 16 17 C -0.09 -1.15 6.23 -91.77 -0.57 -1.72 16 18 C -0.16 -1.75 10.01 -26.73 -0.27 -2.01 16 19 C -0.16 -1.79 10.23 -26.73 -0.27 -2.07 16 20 N -0.50 -8.79 10.31 -10.37 -0.11 -8.90 16 21 C 0.11 1.96 10.73 -16.75 -0.18 1.78 16 22 C 0.19 4.13 10.72 -16.84 -0.18 3.95 16 23 N -0.59 -14.53 10.34 -12.41 -0.13 -14.66 16 24 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 25 H 0.13 2.52 6.43 -52.48 -0.34 2.18 16 26 H 0.16 2.34 6.43 -52.49 -0.34 2.00 16 27 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.11 1.32 7.53 -51.93 -0.39 0.93 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.16 2.51 6.43 -52.49 -0.34 2.17 16 33 H 0.13 2.32 6.43 -52.48 -0.34 1.98 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -28.60 292.77 -9.22 -37.82 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.98 Total: 6.62 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -5.83 Total: 0.52 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.20 Total: -61.18 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.02 Total: 11.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.60 -9.22 -37.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240685951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.744 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds