Wall clock time and date at job start Mon Mar 30 2020 01:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99578 * 2 1 4 4 C 1.50706 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.98983 * 89.99449 * 4 3 2 6 6 C 1.38187 * 120.01572 * 180.02562 * 5 4 3 7 7 C 1.38381 * 119.98694 * 359.97438 * 6 5 4 8 8 Cl 1.73599 * 120.01398 * 179.97438 * 7 6 5 9 9 C 1.38322 * 119.97059 * 359.97438 * 7 6 5 10 10 C 1.50701 * 120.00606 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 279.99992 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00113 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47375 * 89.99678 * 17 15 13 19 19 H 1.48508 * 109.47196 * 209.99673 * 17 15 13 20 20 H 1.48504 * 109.47051 * 329.99297 * 17 15 13 21 21 C 1.38229 * 119.98426 * 270.25605 * 4 3 2 22 22 H 1.08994 * 109.47320 * 299.99815 * 1 2 3 23 23 H 1.09001 * 109.47373 * 60.00235 * 1 2 3 24 24 H 1.09010 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47363 * 59.99881 * 3 2 1 26 26 H 1.08997 * 109.47620 * 299.99583 * 3 2 1 27 27 H 1.08007 * 119.99455 * 0.03143 * 5 4 3 28 28 H 1.08004 * 120.00942 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.47060 * 40.00048 * 10 9 7 30 30 H 1.09001 * 109.47380 * 160.00135 * 10 9 7 31 31 H 1.09002 * 109.47153 * 299.99998 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99628 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 0.97008 * 120.00167 * 179.97438 * 16 15 13 36 36 H 1.07994 * 119.98970 * 359.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2009 1.1322 -1.1984 6 6 5.5784 1.0226 -1.1996 7 6 6.2690 0.9679 -0.0016 8 17 7.9994 0.8296 -0.0023 9 6 5.5797 1.0235 1.1964 10 6 6.3309 0.9634 2.5015 11 6 6.6876 -0.4903 2.8181 12 6 7.4507 -0.5513 4.1427 13 6 7.8016 -1.9833 4.4550 14 1 7.5098 -2.7711 3.7763 15 6 8.4959 -2.2876 5.6066 16 7 8.8016 -3.5373 5.8793 17 14 9.0012 -0.9250 6.7802 18 1 7.9260 -0.7101 7.7816 19 1 10.2555 -1.3105 7.4757 20 1 9.2241 0.3288 6.0163 21 6 4.2012 1.1265 1.1963 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.6620 1.1754 -2.1334 28 1 6.1161 0.9797 -2.1353 29 1 7.2444 1.5527 2.4224 30 1 5.7065 1.3662 3.2990 31 1 5.7741 -1.0797 2.8972 32 1 7.3119 -0.8933 2.0207 33 1 8.3643 0.0379 4.0632 34 1 6.8267 -0.1484 4.9404 35 1 9.2905 -3.7514 6.6894 36 1 3.6626 1.1652 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:34 Heat of formation + Delta-G solvation = -50.034740 kcal Electronic energy + Delta-G solvation = -17482.350296 eV Core-core repulsion = 14570.634355 eV Total energy + Delta-G solvation = -2911.715941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76963 -37.88670 -36.26048 -34.94959 -32.68080 -31.73271 -30.72485 -27.57309 -27.07589 -25.45240 -23.61039 -22.21236 -20.64226 -19.91987 -16.98463 -16.60691 -16.53734 -16.42936 -15.74259 -15.32204 -14.46086 -14.09733 -13.84448 -13.61560 -13.19390 -13.12286 -12.60370 -12.59644 -12.01725 -11.88874 -11.65313 -11.53160 -11.31137 -11.15199 -11.02271 -10.67630 -10.57762 -9.95599 -9.82736 -9.63460 -9.62706 -9.12980 -8.81711 -8.47888 -8.46916 -5.98012 -3.95286 1.03974 1.29837 2.29421 3.34193 3.34616 3.41786 3.46159 3.94551 4.50641 4.61471 4.65991 4.81353 4.97615 5.02345 5.11002 5.12677 5.28133 5.35989 5.42752 5.43457 5.58940 5.71538 5.89267 5.94562 6.13617 6.27882 6.32926 6.42901 6.71083 6.73516 6.78437 6.88980 6.99415 7.39471 7.51623 7.86357 8.61704 9.08004 9.64757 11.15696 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.004548 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.636485 B = 6155.247723 C = 7152.731230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.104 3.896 4 C -0.091 4.091 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.028 4.028 8 Cl -0.060 7.060 9 C -0.059 4.059 10 C -0.090 4.090 11 C -0.096 4.096 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.265 1.265 21 C -0.086 4.086 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 13.391 -14.677 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.028 3.972 4 C -0.091 4.091 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.055 4.055 8 Cl -0.031 7.031 9 C -0.060 4.060 10 C -0.127 4.127 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.104 4.104 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.089 13.099 -14.543 23.546 hybrid contribution 0.239 0.733 0.667 1.020 sum -12.850 13.832 -13.876 23.430 Atomic orbital electron populations 1.22768 0.80998 1.02984 0.99875 1.88022 1.19570 1.27215 1.95365 1.21323 0.89736 0.85257 1.00884 1.19593 0.94072 1.01905 0.93515 1.20867 0.93303 1.00047 0.97614 1.20986 0.94166 1.01192 0.96794 1.20916 0.85319 1.04644 0.94602 1.98384 1.09865 1.96078 1.98805 1.20024 0.93639 0.97370 0.94988 1.20891 0.99398 1.00581 0.91859 1.21449 1.00325 0.91838 0.99734 1.19573 0.95090 0.97848 0.92489 1.21166 1.35433 0.91873 1.07036 0.91074 1.25034 0.95512 0.95265 0.97760 1.69924 1.40760 1.17584 1.26222 0.86786 0.78117 0.83138 0.81299 1.20352 1.21465 1.18964 1.20939 0.92768 0.98844 0.97895 0.93960 0.94152 0.89448 0.92258 0.92437 0.85438 0.85008 0.90631 0.91083 0.92760 0.92187 0.96599 0.97161 0.92841 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.46 10.69 -35.23 -0.38 -4.84 16 3 C 0.10 1.02 6.06 36.01 0.22 1.24 16 4 C -0.09 -1.08 5.51 -104.62 -0.58 -1.66 16 5 C -0.10 -1.12 9.70 -39.59 -0.38 -1.51 16 6 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 7 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 8 Cl -0.06 -0.91 26.63 -51.86 -1.38 -2.29 16 9 C -0.06 -0.89 5.14 -104.59 -0.54 -1.43 16 10 C -0.09 -1.50 4.80 -27.88 -0.13 -1.63 16 11 C -0.10 -1.98 5.08 -26.74 -0.14 -2.12 16 12 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 13 C -0.52 -15.21 9.66 -34.44 -0.33 -15.55 16 14 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 15 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 17 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 21 C -0.09 -1.15 9.33 -39.59 -0.37 -1.52 16 22 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 28 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.08 1.25 7.36 -51.93 -0.38 0.87 16 30 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.28 7.26 -51.93 -0.38 0.90 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.13 1.60 8.04 -52.49 -0.42 1.17 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -32.62 318.03 -8.17 -40.80 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.33 Total: -4.32 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.99 Total: -23.83 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: 0.77 Total: -27.84 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.38 Total: -4.84 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.38 Total: -2.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.62 -8.17 -40.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.237 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds