Wall clock time and date at job start Mon Mar 30 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99578 * 2 1 4 4 C 1.50706 * 109.47140 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.98983 * 89.99449 * 4 3 2 6 6 C 1.38187 * 120.01572 * 180.02562 * 5 4 3 7 7 C 1.38381 * 119.98694 * 359.97438 * 6 5 4 8 8 Cl 1.73599 * 120.01398 * 179.97438 * 7 6 5 9 9 C 1.38322 * 119.97059 * 359.97438 * 7 6 5 10 10 C 1.50701 * 120.00606 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47212 * 279.99992 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00113 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47375 * 89.99678 * 17 15 13 19 19 H 1.48508 * 109.47196 * 209.99673 * 17 15 13 20 20 H 1.48504 * 109.47051 * 329.99297 * 17 15 13 21 21 C 1.38229 * 119.98426 * 270.25605 * 4 3 2 22 22 H 1.08994 * 109.47320 * 299.99815 * 1 2 3 23 23 H 1.09001 * 109.47373 * 60.00235 * 1 2 3 24 24 H 1.09010 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47363 * 59.99881 * 3 2 1 26 26 H 1.08997 * 109.47620 * 299.99583 * 3 2 1 27 27 H 1.08007 * 119.99455 * 0.03143 * 5 4 3 28 28 H 1.08004 * 120.00942 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.47060 * 40.00048 * 10 9 7 30 30 H 1.09001 * 109.47380 * 160.00135 * 10 9 7 31 31 H 1.09002 * 109.47153 * 299.99998 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99628 * 11 10 9 33 33 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 34 34 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 35 35 H 0.97008 * 120.00167 * 179.97438 * 16 15 13 36 36 H 1.07994 * 119.98970 * 359.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2009 1.1322 -1.1984 6 6 5.5784 1.0226 -1.1996 7 6 6.2690 0.9679 -0.0016 8 17 7.9994 0.8296 -0.0023 9 6 5.5797 1.0235 1.1964 10 6 6.3309 0.9634 2.5015 11 6 6.6876 -0.4903 2.8181 12 6 7.4507 -0.5513 4.1427 13 6 7.8016 -1.9833 4.4550 14 1 7.5098 -2.7711 3.7763 15 6 8.4959 -2.2876 5.6066 16 7 8.8016 -3.5373 5.8793 17 14 9.0012 -0.9250 6.7802 18 1 7.9260 -0.7101 7.7816 19 1 10.2555 -1.3105 7.4757 20 1 9.2241 0.3288 6.0163 21 6 4.2012 1.1265 1.1963 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.6885 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.6620 1.1754 -2.1334 28 1 6.1161 0.9797 -2.1353 29 1 7.2444 1.5527 2.4224 30 1 5.7065 1.3662 3.2990 31 1 5.7741 -1.0797 2.8972 32 1 7.3119 -0.8933 2.0207 33 1 8.3643 0.0379 4.0632 34 1 6.8267 -0.1484 4.9404 35 1 9.2905 -3.7514 6.6894 36 1 3.6626 1.1652 2.1316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:33 Heat of formation + Delta-G solvation = -68.898561 kcal Electronic energy + Delta-G solvation = -17483.168293 eV Core-core repulsion = 14570.634355 eV Total energy + Delta-G solvation = -2912.533937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73788 -38.68658 -37.33720 -36.54919 -34.61502 -32.72580 -32.27435 -28.96080 -28.04640 -26.19280 -25.28705 -23.24170 -22.18940 -21.33909 -18.89178 -17.84268 -17.34347 -17.30557 -16.65982 -16.28766 -16.22818 -15.36629 -15.25634 -14.95182 -14.54728 -14.24779 -14.03628 -13.75389 -13.42030 -13.13876 -12.81726 -12.67596 -12.54407 -12.52069 -12.23055 -12.05584 -11.88814 -11.74082 -11.38135 -11.32328 -11.30492 -10.75282 -10.62554 -9.83178 -9.54950 -8.28544 -6.32761 0.05941 0.31323 1.21704 1.35810 1.38481 1.50915 2.37297 2.44155 3.06693 3.17723 3.67181 3.80140 3.88644 4.18548 4.21000 4.33008 4.38490 4.45226 4.52912 4.57242 4.59613 4.66018 4.80240 4.89006 4.90268 5.02143 5.06769 5.10902 5.21518 5.38660 5.50600 5.54446 5.64960 5.67651 5.83303 6.23769 6.30267 6.74970 7.31577 8.88737 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.004548 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.636485 B = 6155.247723 C = 7152.731230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.103 3.897 4 C -0.094 4.094 5 C -0.093 4.093 6 C -0.114 4.114 7 C -0.045 4.045 8 Cl -0.076 7.076 9 C -0.081 4.081 10 C -0.079 4.079 11 C -0.087 4.087 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.026 0.974 15 C 0.002 3.998 16 N -0.954 5.954 17 Si 0.953 3.047 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.245 1.245 21 C -0.094 4.094 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.266 0.734 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 15.861 -15.207 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.027 3.973 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.133 4.133 7 C -0.071 4.071 8 Cl -0.047 7.047 9 C -0.082 4.082 10 C -0.116 4.116 11 C -0.124 4.124 12 C -0.046 4.046 13 C -0.571 4.571 14 H 0.044 0.956 15 C -0.195 4.195 16 N -0.595 5.595 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.169 1.169 21 C -0.113 4.113 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.177 0.823 28 H 0.170 0.830 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.528 15.580 -15.092 26.107 hybrid contribution 0.584 -0.134 0.727 0.942 sum -13.944 15.445 -14.365 25.286 Atomic orbital electron populations 1.22939 0.79234 1.03683 1.01234 1.87962 1.21613 1.28333 1.95668 1.21435 0.88090 0.85004 1.02758 1.19932 0.95597 1.00686 0.93160 1.21271 0.92941 0.98137 0.98753 1.21276 0.94819 1.00405 0.96765 1.21116 0.84708 1.05829 0.95464 1.98373 1.11196 1.96250 1.98843 1.19920 0.94366 0.99671 0.94262 1.20678 1.00052 0.97274 0.93605 1.21256 0.98931 0.94873 0.97368 1.19522 0.95857 0.94502 0.94768 1.21516 1.35570 0.93528 1.06513 0.95585 1.26071 0.95361 0.98153 0.99874 1.70086 1.41892 1.20264 1.27247 0.85611 0.78066 0.79952 0.78754 1.18820 1.20960 1.16856 1.21114 0.92191 0.98816 0.99129 0.93032 0.92319 0.89210 0.91089 0.89897 0.82344 0.83037 0.90625 0.89647 0.93933 0.93613 0.96200 0.95935 0.92515 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.77 10.69 -148.98 -1.59 -10.36 16 3 C 0.10 1.71 6.06 71.24 0.43 2.14 16 4 C -0.09 -2.01 5.51 -19.86 -0.11 -2.12 16 5 C -0.09 -1.82 9.70 22.26 0.22 -1.60 16 6 C -0.11 -2.56 9.83 22.29 0.22 -2.34 16 7 C -0.04 -1.25 6.31 22.32 0.14 -1.11 16 8 Cl -0.08 -2.26 26.63 -2.72 -0.07 -2.34 16 9 C -0.08 -2.38 5.14 -19.84 -0.10 -2.48 16 10 C -0.08 -2.57 4.80 29.85 0.14 -2.42 16 11 C -0.09 -3.62 5.08 30.59 0.16 -3.47 16 12 C -0.01 -0.45 4.04 29.84 0.12 -0.33 16 13 C -0.53 -32.30 9.66 25.60 0.25 -32.06 16 14 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 15 C 0.00 0.10 5.47 84.65 0.46 0.56 16 16 N -0.95 -61.87 13.96 21.45 0.30 -61.58 16 17 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 21 C -0.09 -2.39 9.33 22.27 0.21 -2.18 16 22 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 26 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 27 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.08 2.43 7.36 -2.39 -0.02 2.42 16 30 H 0.08 2.49 8.01 -2.39 -0.02 2.47 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.01 7.26 -2.39 -0.02 1.99 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 34 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 35 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 36 H 0.14 3.18 8.04 -2.91 -0.02 3.15 16 Total: -1.00 -72.03 318.03 4.90 -67.14 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.00 Total: 5.66 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.38 Total: -45.84 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.30 Total: -61.58 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -1.59 Total: -10.36 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.34 kcal Total: -72.03 4.90 -67.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.761 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds