Wall clock time and date at job start Mon Mar 30 2020 00:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34959 * 125.97519 * 2 1 4 4 C 1.35247 * 107.86052 * 179.76814 * 3 2 1 5 5 N 1.48026 * 126.06648 * 180.24676 * 4 3 2 6 6 O 1.21799 * 119.99829 * 0.15483 * 5 4 3 7 7 O 1.21798 * 120.00128 * 180.15487 * 5 4 3 8 8 C 1.40428 * 107.86322 * 0.37479 * 4 3 2 9 9 N 1.39990 * 125.97355 * 179.88355 * 8 4 3 10 10 C 1.47958 * 111.00007 * 179.71727 * 9 8 4 11 11 C 1.53927 * 86.18328 * 222.42229 * 10 9 8 12 12 O 1.42908 * 113.73409 * 269.25739 * 11 10 9 13 13 C 1.50696 * 113.73938 * 138.07856 * 11 10 9 14 14 H 1.08004 * 119.99656 * 5.17075 * 13 11 10 15 15 C 1.37877 * 120.00407 * 184.89337 * 13 11 10 16 16 N 1.31516 * 119.99824 * 7.08196 * 15 13 11 17 17 Si 1.86796 * 120.00096 * 187.07856 * 15 13 11 18 18 H 1.48496 * 109.47354 * 94.89655 * 17 15 13 19 19 H 1.48505 * 109.47498 * 214.90074 * 17 15 13 20 20 H 1.48506 * 109.47221 * 334.89879 * 17 15 13 21 21 C 1.47958 * 110.99860 * 80.35866 * 9 8 4 22 22 N 1.31217 * 108.04817 * 359.62646 * 8 4 3 23 23 H 1.09002 * 109.47134 * 270.02328 * 1 2 3 24 24 H 1.09007 * 109.47093 * 30.01310 * 1 2 3 25 25 H 1.08998 * 109.47481 * 150.01904 * 1 2 3 26 26 H 1.07995 * 126.06625 * 0.04902 * 3 2 1 27 27 H 1.08994 * 113.75964 * 108.10102 * 10 9 8 28 28 H 1.09004 * 113.75648 * 336.73943 * 10 9 8 29 29 H 0.96698 * 114.00093 * 162.47043 * 12 11 10 30 30 H 0.96999 * 119.99445 * 180.02562 * 16 15 13 31 31 H 1.09005 * 113.75980 * 23.26594 * 21 9 8 32 32 H 1.09002 * 113.76320 * 251.90083 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5432 0.6717 0.0052 5 7 4.7435 1.5380 0.0122 6 8 4.6200 2.7497 0.0166 7 8 5.8546 1.0391 0.0137 8 6 3.5371 -0.7326 -0.0002 9 7 4.6664 -1.5598 0.0003 10 6 4.2779 -2.9875 0.0003 11 6 5.3984 -3.1862 1.0368 12 8 6.6653 -3.5089 0.4596 13 6 5.0196 -4.1026 2.1716 14 1 4.0688 -4.6148 2.1577 15 6 5.8891 -4.2917 3.2248 16 7 6.9849 -3.5695 3.3106 17 14 5.5107 -5.5734 4.5298 18 1 6.2014 -6.8436 4.1912 19 1 5.9847 -5.0894 5.8514 20 1 4.0450 -5.8064 4.5847 21 6 5.2264 -1.6918 1.3635 22 7 2.2877 -1.1337 -0.0003 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.9248 2.1195 0.0007 27 1 4.4620 -3.4927 -0.9477 28 1 3.2780 -3.1705 0.3940 29 1 7.4148 -3.3739 1.0555 30 1 7.5968 -3.7028 4.0513 31 1 4.5040 -1.4958 2.1559 32 1 6.1684 -1.1617 1.5046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559170872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:30 Heat of formation + Delta-G solvation = 78.680461 kcal Electronic energy + Delta-G solvation = -20857.883106 eV Core-core repulsion = 17439.791918 eV Total energy + Delta-G solvation = -3418.091188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17864 -41.01664 -39.10138 -35.97557 -34.69232 -33.01565 -32.21317 -31.03274 -28.52804 -27.02558 -25.35716 -25.23914 -23.91066 -21.43528 -20.52784 -18.78461 -18.73466 -17.98531 -17.24727 -17.11412 -16.33336 -15.83498 -15.51067 -15.12628 -14.41113 -14.12438 -14.06010 -13.33594 -13.03858 -12.69912 -12.30160 -11.71801 -11.54038 -11.36443 -11.12658 -10.99298 -10.94731 -10.63866 -10.60923 -10.44249 -10.26253 -9.80592 -9.46785 -9.32985 -8.70363 -8.55798 -7.95849 -6.28868 -4.37016 0.58148 1.51929 1.59472 2.35393 2.50225 3.19577 3.27577 3.29592 3.98585 4.09867 4.25856 4.42358 4.74222 4.82087 4.90725 5.01181 5.08246 5.27144 5.77405 5.98921 6.06964 6.15992 6.31407 6.54928 6.65201 6.80460 6.92685 7.18400 7.31936 7.66948 7.71431 7.98749 8.19735 8.64082 9.32190 9.39443 10.78763 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.006302 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.470857 B = 4441.873127 C = 5091.426294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.350 5.350 3 C 0.149 3.851 4 C -0.189 4.189 5 N 0.072 4.928 6 O -0.208 6.208 7 O -0.130 6.130 8 C 0.298 3.702 9 N -0.401 5.401 10 C 0.017 3.983 11 C 0.250 3.750 12 O -0.563 6.563 13 C -0.540 4.540 14 H 0.067 0.933 15 C 0.076 3.924 16 N -0.888 5.888 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.013 3.987 22 N -0.308 5.308 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.201 0.799 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.384 0.616 30 H 0.270 0.730 31 H 0.065 0.935 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 8.024 -4.144 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.129 5.129 3 C -0.006 4.006 4 C -0.289 4.289 5 N 0.588 4.412 6 O -0.410 6.410 7 O -0.352 6.352 8 C 0.039 3.961 9 N -0.123 5.123 10 C -0.111 4.111 11 C 0.208 3.792 12 O -0.371 6.371 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.128 4.128 16 N -0.526 5.526 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.114 4.114 22 N -0.135 5.135 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.218 0.782 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.235 0.765 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.850 6.839 -5.075 16.259 hybrid contribution 0.318 0.370 1.738 1.805 sum -13.532 7.209 -3.337 15.692 Atomic orbital electron populations 1.22113 0.72031 1.05430 1.04496 1.48355 1.07408 1.03339 1.53764 1.22164 0.88801 0.95077 0.94596 1.20855 0.86281 0.90568 1.31193 1.42337 1.01514 1.00287 0.97054 1.94462 1.93408 0.96479 1.56662 1.94641 1.10103 1.78193 1.52273 1.21877 0.91525 0.90691 0.92032 1.66633 1.12651 1.05284 1.27776 1.24259 0.99957 0.85310 1.01558 1.19743 0.82125 0.88735 0.88608 1.86109 1.16741 1.89970 1.44274 1.21483 1.04035 1.28179 1.04154 0.91491 1.25037 0.94775 0.95314 0.97697 1.69703 1.12091 1.38372 1.32450 0.86440 0.78717 0.81662 0.80354 1.20227 1.21043 1.19794 1.24939 0.99677 1.02584 0.84184 1.78026 0.99448 1.05845 1.30184 0.89550 0.88656 0.88187 0.78222 0.89675 0.89298 0.76467 0.91992 0.91620 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.30 16 2 N -0.35 -4.31 4.01 -68.17 -0.27 -4.58 16 3 C 0.15 1.86 11.16 -17.24 -0.19 1.67 16 4 C -0.19 -3.34 7.12 -80.18 -0.57 -3.91 16 5 N 0.07 1.40 4.45 33.85 0.15 1.55 16 6 O -0.21 -3.78 19.02 -29.46 -0.56 -4.34 16 7 O -0.13 -2.81 17.83 -29.46 -0.53 -3.33 16 8 C 0.30 5.84 6.14 -154.55 -0.95 4.89 16 9 N -0.40 -8.88 5.67 -176.22 -1.00 -9.88 16 10 C 0.02 0.37 7.16 -2.77 -0.02 0.35 16 11 C 0.25 6.25 1.25 -90.85 -0.11 6.14 16 12 O -0.56 -14.74 13.39 -35.23 -0.47 -15.21 16 13 C -0.54 -14.30 8.59 -34.44 -0.30 -14.60 16 14 H 0.07 1.75 7.82 -52.48 -0.41 1.34 16 15 C 0.08 1.98 5.38 -17.82 -0.10 1.89 16 16 N -0.89 -23.60 11.76 55.43 0.65 -22.95 16 17 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 21 C 0.01 0.30 6.84 -2.77 -0.02 0.29 16 22 N -0.31 -5.35 11.11 31.41 0.35 -5.00 16 23 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.09 1.91 6.97 -51.93 -0.36 1.55 16 29 H 0.38 10.01 7.45 45.56 0.34 10.35 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.07 1.59 7.86 -51.93 -0.41 1.18 16 32 H 0.09 2.36 7.98 -51.93 -0.41 1.94 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -31.74 290.24 -6.40 -38.14 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -2.50 Total: 7.89 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.57 Total: -1.98 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.12 Total: -40.85 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.56 Total: -22.88 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.74 -6.40 -38.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559170872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.820 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds