Wall clock time and date at job start Mon Mar 30 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34959 * 125.97519 * 2 1 4 4 C 1.35247 * 107.86052 * 179.76814 * 3 2 1 5 5 N 1.48026 * 126.06648 * 180.24676 * 4 3 2 6 6 O 1.21799 * 119.99829 * 0.15483 * 5 4 3 7 7 O 1.21798 * 120.00128 * 180.15487 * 5 4 3 8 8 C 1.40428 * 107.86322 * 0.37479 * 4 3 2 9 9 N 1.39990 * 125.97355 * 179.88355 * 8 4 3 10 10 C 1.47958 * 111.00007 * 179.71727 * 9 8 4 11 11 C 1.53927 * 86.18328 * 222.42229 * 10 9 8 12 12 O 1.42908 * 113.73409 * 269.25739 * 11 10 9 13 13 C 1.50696 * 113.73938 * 138.07856 * 11 10 9 14 14 H 1.08004 * 119.99656 * 5.17075 * 13 11 10 15 15 C 1.37877 * 120.00407 * 184.89337 * 13 11 10 16 16 N 1.31516 * 119.99824 * 7.08196 * 15 13 11 17 17 Si 1.86796 * 120.00096 * 187.07856 * 15 13 11 18 18 H 1.48496 * 109.47354 * 94.89655 * 17 15 13 19 19 H 1.48505 * 109.47498 * 214.90074 * 17 15 13 20 20 H 1.48506 * 109.47221 * 334.89879 * 17 15 13 21 21 C 1.47958 * 110.99860 * 80.35866 * 9 8 4 22 22 N 1.31217 * 108.04817 * 359.62646 * 8 4 3 23 23 H 1.09002 * 109.47134 * 270.02328 * 1 2 3 24 24 H 1.09007 * 109.47093 * 30.01310 * 1 2 3 25 25 H 1.08998 * 109.47481 * 150.01904 * 1 2 3 26 26 H 1.07995 * 126.06625 * 0.04902 * 3 2 1 27 27 H 1.08994 * 113.75964 * 108.10102 * 10 9 8 28 28 H 1.09004 * 113.75648 * 336.73943 * 10 9 8 29 29 H 0.96698 * 114.00093 * 162.47043 * 12 11 10 30 30 H 0.96999 * 119.99445 * 180.02562 * 16 15 13 31 31 H 1.09005 * 113.75980 * 23.26594 * 21 9 8 32 32 H 1.09002 * 113.76320 * 251.90083 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0922 0.0000 4 6 3.5432 0.6717 0.0052 5 7 4.7435 1.5380 0.0122 6 8 4.6200 2.7497 0.0166 7 8 5.8546 1.0391 0.0137 8 6 3.5371 -0.7326 -0.0002 9 7 4.6664 -1.5598 0.0003 10 6 4.2779 -2.9875 0.0003 11 6 5.3984 -3.1862 1.0368 12 8 6.6653 -3.5089 0.4596 13 6 5.0196 -4.1026 2.1716 14 1 4.0688 -4.6148 2.1577 15 6 5.8891 -4.2917 3.2248 16 7 6.9849 -3.5695 3.3106 17 14 5.5107 -5.5734 4.5298 18 1 6.2014 -6.8436 4.1912 19 1 5.9847 -5.0894 5.8514 20 1 4.0450 -5.8064 4.5847 21 6 5.2264 -1.6918 1.3635 22 7 2.2877 -1.1337 -0.0003 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8899 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.9248 2.1195 0.0007 27 1 4.4620 -3.4927 -0.9477 28 1 3.2780 -3.1705 0.3940 29 1 7.4148 -3.3739 1.0555 30 1 7.5968 -3.7028 4.0513 31 1 4.5040 -1.4958 2.1559 32 1 6.1684 -1.1617 1.5046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559170872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:29 Heat of formation + Delta-G solvation = 53.898896 kcal Electronic energy + Delta-G solvation = -20858.957716 eV Core-core repulsion = 17439.791918 eV Total energy + Delta-G solvation = -3419.165797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.49567 -42.40943 -40.80473 -37.43513 -36.45531 -34.27959 -34.21139 -32.32461 -29.98351 -28.41669 -27.18442 -26.87075 -25.31048 -22.66577 -22.00422 -20.58869 -20.12642 -19.47094 -19.01546 -18.54032 -17.64359 -17.20657 -16.98056 -16.76805 -16.10923 -15.77354 -15.48224 -14.61001 -14.22266 -13.99047 -13.70175 -13.42164 -13.31984 -12.88554 -12.79368 -12.76610 -12.42425 -12.32538 -12.22273 -12.13106 -12.02094 -11.37867 -11.10282 -10.71341 -10.65072 -10.37642 -9.69939 -8.27746 -6.44174 -0.73266 0.30756 0.36786 1.09038 1.26483 1.40186 1.43321 1.52453 2.35091 2.60139 2.91478 3.04875 3.40380 3.58706 3.87203 3.94826 4.11088 4.21027 4.31646 4.37711 4.51203 4.66651 4.73719 4.89705 4.98737 5.20695 5.32233 5.50339 5.67226 5.94000 5.97781 6.06120 6.59630 6.72395 7.27439 7.31757 8.79140 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021509 B = 0.006302 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.470857 B = 4441.873127 C = 5091.426294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.330 5.330 3 C 0.188 3.812 4 C -0.225 4.225 5 N 0.077 4.923 6 O -0.159 6.159 7 O -0.224 6.224 8 C 0.269 3.731 9 N -0.412 5.412 10 C 0.030 3.970 11 C 0.230 3.770 12 O -0.572 6.572 13 C -0.563 4.563 14 H 0.065 0.935 15 C 0.032 3.968 16 N -0.910 5.910 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.032 3.968 22 N -0.326 5.326 23 H 0.105 0.895 24 H 0.144 0.856 25 H 0.103 0.897 26 H 0.260 0.740 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.380 0.620 30 H 0.273 0.727 31 H 0.054 0.946 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.959 9.324 -3.991 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.108 5.108 3 C 0.030 3.970 4 C -0.325 4.325 5 N 0.587 4.413 6 O -0.377 6.377 7 O -0.423 6.423 8 C 0.010 3.990 9 N -0.133 5.133 10 C -0.098 4.098 11 C 0.189 3.811 12 O -0.381 6.381 13 C -0.601 4.601 14 H 0.083 0.917 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.096 4.096 22 N -0.153 5.153 23 H 0.124 0.876 24 H 0.162 0.838 25 H 0.121 0.879 26 H 0.276 0.724 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.230 0.770 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.214 7.985 -4.939 19.608 hybrid contribution 1.063 0.166 1.651 1.970 sum -16.151 8.151 -3.288 18.388 Atomic orbital electron populations 1.22791 0.67985 1.08041 1.06567 1.48934 1.09135 1.01899 1.50853 1.22987 0.86365 0.97115 0.90493 1.21116 0.87133 0.89730 1.34567 1.42549 1.01877 1.00499 0.96382 1.94386 1.93351 0.96711 1.53256 1.94677 1.11505 1.78503 1.57602 1.21753 0.91509 0.91479 0.94305 1.66419 1.14951 1.05374 1.26569 1.24098 0.99065 0.85963 1.00681 1.20004 0.82201 0.89278 0.89633 1.86087 1.17275 1.90191 1.44504 1.21718 1.04338 1.28958 1.05050 0.91669 1.25794 0.94624 0.96940 0.99612 1.69798 1.12701 1.39219 1.33070 0.85438 0.78684 0.79058 0.77794 1.19939 1.20550 1.19199 1.24471 0.98455 1.01442 0.85234 1.77903 0.99104 1.08635 1.29652 0.87650 0.83840 0.87882 0.72388 0.89537 0.88735 0.76970 0.91766 0.92787 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.47 127.77 1.47 2.03 16 2 N -0.33 -6.75 4.01 -369.60 -1.48 -8.23 16 3 C 0.19 3.83 11.16 83.52 0.93 4.76 16 4 C -0.23 -7.62 7.12 36.22 0.26 -7.36 16 5 N 0.08 2.97 4.45 -46.83 -0.21 2.77 16 6 O -0.16 -5.42 19.02 18.89 0.36 -5.06 16 7 O -0.22 -10.29 17.83 18.89 0.34 -9.96 16 8 C 0.27 10.54 6.14 133.39 0.82 11.36 16 9 N -0.41 -18.96 5.67 -714.64 -4.05 -23.01 16 10 C 0.03 1.36 7.16 86.40 0.62 1.98 16 11 C 0.23 12.02 1.25 -10.90 -0.01 12.01 16 12 O -0.57 -31.53 13.39 -148.98 -2.00 -33.53 16 13 C -0.56 -30.53 8.59 25.60 0.22 -30.31 16 14 H 0.07 3.46 7.82 -2.91 -0.02 3.44 16 15 C 0.03 1.71 5.38 84.65 0.46 2.16 16 16 N -0.91 -49.71 11.76 21.45 0.25 -49.45 16 17 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.03 1.59 6.84 86.41 0.59 2.18 16 22 N -0.33 -10.79 11.11 -54.55 -0.61 -11.39 16 23 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.14 -0.26 8.14 -2.38 -0.02 -0.28 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.26 2.04 8.06 -2.91 -0.02 2.02 16 27 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 28 H 0.09 4.15 6.97 -2.39 -0.02 4.13 16 29 H 0.38 21.02 7.45 -74.06 -0.55 20.47 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.05 2.75 7.86 -2.38 -0.02 2.73 16 32 H 0.07 3.85 7.98 -2.39 -0.02 3.83 16 Total: -1.00 -73.80 290.24 0.60 -73.20 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.62 Total: 21.89 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.35 Total: -1.19 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -6.09 Total: -89.32 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.30 Total: -48.55 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -73.80 0.60 -73.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559170872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.097 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds