Wall clock time and date at job start Mon Mar 30 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00015 * 2 1 4 4 H 1.07992 * 119.99863 * 203.04868 * 3 2 1 5 5 C 1.38816 * 119.99983 * 23.04828 * 3 2 1 6 6 N 1.31623 * 119.99749 * 12.92856 * 5 3 2 7 7 Si 1.86800 * 120.00141 * 192.92666 * 5 3 2 8 8 H 1.48505 * 109.46900 * 59.99936 * 7 5 3 9 9 H 1.48499 * 109.46880 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46969 * 300.00052 * 7 5 3 11 11 C 1.46496 * 119.99872 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.47273 * 89.99716 * 11 2 1 13 13 N 1.46497 * 109.47097 * 179.97438 * 12 11 2 14 14 C 1.34773 * 119.99994 * 180.02562 * 13 12 11 15 15 O 1.21283 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00168 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47111 * 179.97438 * 16 14 13 18 18 C 1.33399 * 125.20115 * 89.99934 * 17 16 14 19 19 C 1.38420 * 114.92133 * 179.97438 * 18 17 16 20 20 C 1.33391 * 114.92005 * 359.97438 * 19 18 17 21 21 S 1.75880 * 125.20629 * 269.69428 * 17 16 14 22 22 H 1.09003 * 109.46964 * 275.12380 * 1 2 3 23 23 H 1.08993 * 109.47429 * 35.11963 * 1 2 3 24 24 H 1.08998 * 109.47063 * 155.12529 * 1 2 3 25 25 H 0.97001 * 119.99581 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.47113 * 329.99481 * 11 2 1 27 27 H 1.09000 * 109.47124 * 209.99832 * 11 2 1 28 28 H 1.09007 * 109.46574 * 59.99802 * 12 11 2 29 29 H 1.09000 * 109.47140 * 300.00106 * 12 11 2 30 30 H 0.97004 * 119.99982 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47175 * 300.00031 * 16 14 13 32 32 H 1.08992 * 109.47061 * 59.99960 * 16 14 13 33 33 H 1.07998 * 122.53506 * 359.95964 * 18 17 16 34 34 H 1.07994 * 122.54135 * 180.02562 * 19 18 17 35 35 H 1.08000 * 125.20159 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4707 6 7 0.4118 2.2597 1.1460 7 14 2.3159 4.0074 0.1457 8 1 2.4196 4.2281 -1.3192 9 1 1.4736 5.0719 0.7479 10 1 3.6720 4.0475 0.7495 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 7 3.1854 -2.9782 -1.4438 14 6 3.5229 -3.5611 -2.6112 15 8 3.2193 -3.0357 -3.6614 16 6 4.2764 -4.8661 -2.6118 17 6 4.5276 -5.3005 -4.0328 18 6 5.5998 -4.9771 -4.7577 19 6 5.6131 -5.4937 -6.0418 20 6 4.5521 -6.2370 -6.3597 21 16 3.4557 -6.3176 -4.9868 22 1 -0.3633 0.0918 1.0236 23 1 -0.3634 0.8405 -0.5912 24 1 -0.3633 -0.9323 -0.4323 25 1 -0.0153 3.0662 1.4745 26 1 1.6084 -2.0286 0.5130 27 1 3.1499 -1.1386 0.5133 28 1 3.0415 -0.9499 -1.9568 29 1 1.5000 -1.8399 -1.9572 30 1 3.4279 -3.3986 -0.6039 31 1 5.2286 -4.7362 -2.0975 32 1 3.6871 -5.6261 -2.0988 33 1 6.3968 -4.3589 -4.3718 34 1 6.4217 -5.3096 -6.7336 35 1 4.3926 -6.7189 -7.3130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753040887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:15 Heat of formation + Delta-G solvation = -4.023009 kcal Electronic energy + Delta-G solvation = -17407.000070 eV Core-core repulsion = 14531.615805 eV Total energy + Delta-G solvation = -2875.384265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76616 -38.59162 -37.80541 -35.67520 -33.51591 -32.96038 -29.97054 -28.02747 -27.77536 -25.16982 -24.00084 -22.38021 -21.54047 -20.13720 -18.80842 -18.23031 -17.95574 -17.06758 -16.71477 -16.44923 -16.14963 -15.55520 -15.15457 -14.93180 -14.48234 -14.21272 -13.81329 -13.68944 -13.49958 -13.25098 -13.04837 -12.77324 -12.66686 -12.51767 -12.42214 -12.19597 -11.96900 -11.80602 -11.65360 -11.02335 -10.65912 -10.04969 -9.56981 -9.34833 -8.84057 -7.85705 -5.36153 0.07528 0.75645 1.11548 1.45568 1.49017 1.55050 1.67158 1.81888 2.30194 2.54060 3.28362 3.64594 3.76162 4.06244 4.21063 4.24863 4.28473 4.34444 4.54478 4.67044 4.72333 4.76571 4.81286 5.05798 5.13806 5.22140 5.31522 5.39365 5.51277 5.60809 5.61243 5.68466 6.30211 6.63022 7.11922 7.32343 7.82724 8.25448 9.17303 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.037449 B = 0.003258 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.496488 B = 8590.867836 C = 8938.991045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.617 5.617 3 C -0.271 4.271 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.271 1.271 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.711 5.711 14 C 0.505 3.495 15 O -0.584 6.584 16 C -0.062 4.062 17 C -0.173 4.173 18 C -0.142 4.142 19 C -0.145 4.145 20 C -0.217 4.217 21 S 0.082 5.918 22 H 0.012 0.988 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.250 0.750 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.418 0.582 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 -20.167 -8.291 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.340 5.340 3 C -0.401 4.401 4 H 0.088 0.912 5 C -0.245 4.245 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.218 1.218 10 H -0.197 1.197 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.364 5.364 14 C 0.292 3.708 15 O -0.464 6.464 16 C -0.103 4.103 17 C -0.290 4.290 18 C -0.172 4.172 19 C -0.175 4.175 20 C -0.352 4.352 21 S 0.345 5.655 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.255 0.745 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.373 -20.367 -8.680 23.670 hybrid contribution 1.346 1.854 -0.164 2.296 sum 9.719 -18.514 -8.844 22.703 Atomic orbital electron populations 1.20594 0.82638 0.95923 0.97982 1.44022 1.02226 1.01629 1.86170 1.19478 0.98583 0.86899 1.35114 0.91215 1.25789 0.98563 1.01888 0.98287 1.70215 1.20675 1.27829 1.39491 0.85333 0.77935 0.79472 0.77659 1.20936 1.21824 1.19685 1.20961 0.96920 0.87545 0.92549 1.21825 0.94675 0.84291 1.00314 1.45834 1.57633 1.23769 1.09161 1.21218 0.79221 0.87160 0.83239 1.90719 1.56151 1.66411 1.33124 1.20249 1.03898 0.93736 0.92456 1.24075 0.98788 1.05766 1.00395 1.20391 0.99777 1.02335 0.94695 1.20433 1.00274 0.99678 0.97105 1.25912 0.98288 1.07768 1.03272 1.84216 1.25587 1.49052 1.06611 0.96946 0.96903 0.95086 0.94126 0.91575 0.92101 0.94614 0.94163 0.74457 0.83787 0.85143 0.83431 0.82326 0.79810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.64 8.98 127.77 1.15 9.79 16 2 N -0.62 -30.82 2.92 -726.94 -2.12 -32.95 16 3 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.81 5.10 84.86 0.43 -2.38 16 6 N -0.94 -55.46 10.71 21.65 0.23 -55.23 16 7 Si 0.97 45.39 29.57 68.60 2.03 47.42 16 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 C 0.15 5.54 5.76 86.38 0.50 6.03 16 12 C 0.12 4.15 6.00 86.38 0.52 4.67 16 13 N -0.71 -18.31 5.56 -463.05 -2.57 -20.88 16 14 C 0.50 13.92 7.82 87.66 0.69 14.61 16 15 O -0.58 -22.54 16.03 -3.04 -0.05 -22.59 16 16 C -0.06 -1.08 6.19 29.10 0.18 -0.90 16 17 C -0.17 -3.74 5.00 24.59 0.12 -3.61 16 18 C -0.14 -2.96 10.05 21.22 0.21 -2.74 16 19 C -0.14 -2.73 10.18 21.22 0.22 -2.51 16 20 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 21 S 0.08 1.72 23.33 -56.49 -1.32 0.41 16 22 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 23 H 0.01 0.67 7.34 -2.39 -0.02 0.66 16 24 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 25 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 27 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 28 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.42 7.26 8.47 -92.71 -0.79 6.47 16 31 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -73.16 315.62 2.07 -71.08 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.30 Total: 7.16 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 5.57 Total: 5.58 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.46 Total: -109.06 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.41 kcal Total: -73.16 2.07 -71.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753040887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.061 kcal (2) G-P(sol) polarization free energy of solvation -73.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds