Wall clock time and date at job start Mon Mar 30 2020 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46559 * 2 1 4 4 C 1.52995 * 109.47194 * 240.00609 * 2 1 3 5 5 O 1.42892 * 109.47346 * 119.99753 * 2 1 3 6 6 C 1.42903 * 113.99686 * 60.00595 * 5 2 1 7 7 C 1.50706 * 109.47068 * 179.97438 * 6 5 2 8 8 C 1.35274 * 126.65200 * 90.27583 * 7 6 5 9 9 C 1.42339 * 103.92450 * 180.11901 * 8 7 6 10 10 C 1.48166 * 126.95099 * 179.89148 * 9 8 7 11 11 O 1.21552 * 119.99852 * 359.70435 * 10 9 8 12 12 N 1.34777 * 119.99901 * 179.71089 * 10 9 8 13 13 C 1.36775 * 119.99673 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00215 * 359.97438 * 13 12 10 15 15 C 1.39111 * 119.99877 * 179.97438 * 13 12 10 16 16 N 1.31319 * 119.99938 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00285 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47258 * 59.99677 * 17 15 13 19 19 H 1.48500 * 109.47358 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46884 * 299.99872 * 17 15 13 21 21 N 1.31078 * 106.09916 * 359.62536 * 9 8 7 22 22 O 1.20908 * 111.41854 * 0.23937 * 21 9 8 23 23 H 1.08992 * 109.46994 * 299.99726 * 1 2 3 24 24 H 1.08994 * 109.47189 * 60.00065 * 1 2 3 25 25 H 1.09005 * 109.46516 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47164 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47840 * 299.99859 * 3 2 1 28 28 H 1.08999 * 109.46986 * 60.00683 * 3 2 1 29 29 H 1.09005 * 109.46921 * 299.99179 * 4 2 1 30 30 H 1.08994 * 109.47603 * 59.99580 * 4 2 1 31 31 H 1.08999 * 109.47221 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47573 * 59.99941 * 6 5 2 33 33 H 1.09001 * 109.47052 * 299.99782 * 6 5 2 34 34 H 1.07999 * 128.04460 * 359.97438 * 8 7 6 35 35 H 0.96996 * 119.99871 * 359.97438 * 12 10 9 36 36 H 0.97003 * 119.99546 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0064 -0.6735 1.1667 6 6 1.5848 -2.0355 1.2644 7 6 2.1422 -2.6447 2.5251 8 6 1.5527 -2.6625 3.7425 9 6 2.4896 -3.3471 4.5668 10 6 2.3520 -3.6485 6.0109 11 8 1.3573 -3.2948 6.6134 12 7 3.3297 -4.3146 6.6565 13 6 3.2024 -4.5931 7.9895 14 1 2.3185 -4.2790 8.5249 15 6 4.2113 -5.2811 8.6558 16 7 5.2858 -5.6635 8.0048 17 14 4.0379 -5.6610 10.4765 18 1 2.8295 -6.4961 10.6950 19 1 5.2398 -6.3963 10.9455 20 1 3.9066 -4.3920 11.2366 21 7 3.4963 -3.6622 3.7886 22 8 3.3158 -3.2789 2.6562 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 3.1299 1.4427 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 1.9493 -2.5916 0.4006 33 1 0.4960 -2.0778 1.2906 34 1 0.5949 -2.2507 4.0242 35 1 4.1233 -4.5970 6.1756 36 1 5.9894 -6.1429 8.4695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185147607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:33 Heat of formation + Delta-G solvation = -28.689643 kcal Electronic energy + Delta-G solvation = -19911.505377 eV Core-core repulsion = 16592.298615 eV Total energy + Delta-G solvation = -3319.206761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.52556 -39.30881 -38.07230 -34.33417 -34.08614 -33.23775 -31.91520 -31.18632 -28.03529 -27.71640 -26.30712 -25.76336 -23.32780 -21.96813 -20.33593 -19.14202 -18.16610 -17.39594 -17.11941 -16.59635 -16.00691 -15.61950 -14.93699 -14.69817 -14.27833 -13.98542 -13.69239 -13.52045 -13.42374 -12.91325 -12.71409 -12.46455 -12.29686 -12.03003 -12.00593 -11.67399 -11.60350 -11.17004 -11.01314 -10.85304 -10.52138 -10.33360 -9.91410 -9.79124 -9.57135 -9.23408 -8.76799 -8.14549 -6.58788 -3.94405 1.57312 2.18012 3.11055 3.18381 3.19608 3.23823 3.76370 4.02979 4.20524 4.43266 4.51656 4.53344 4.66784 4.72541 4.93802 5.03560 5.19971 5.22789 5.27174 5.36159 5.42482 5.47099 5.54743 5.55070 5.57663 5.74646 5.80245 5.97128 5.97563 6.14496 6.44570 6.97345 7.38916 7.87737 8.40083 8.60292 8.99125 9.36636 9.88738 10.57144 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048394 B = 0.003334 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.444899 B = 8395.397197 C = 8624.280870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.146 3.854 7 C -0.059 4.059 8 C -0.161 4.161 9 C 0.007 3.993 10 C 0.493 3.507 11 O -0.588 6.588 12 N -0.524 5.524 13 C -0.302 4.302 14 H 0.110 0.890 15 C 0.027 3.973 16 N -0.880 5.880 17 Si 0.939 3.061 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.270 1.270 21 N -0.342 5.342 22 O 0.112 5.888 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.175 0.825 35 H 0.401 0.599 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 8.925 -18.385 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.068 3.932 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.289 6.289 6 C 0.069 3.931 7 C -0.122 4.122 8 C -0.183 4.183 9 C -0.152 4.152 10 C 0.278 3.722 11 O -0.473 6.473 12 N -0.158 5.158 13 C -0.432 4.432 14 H 0.128 0.872 15 C -0.178 4.178 16 N -0.519 5.519 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.195 1.195 21 N -0.047 5.047 22 O 0.040 5.960 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.193 0.807 35 H 0.235 0.765 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.359 8.489 -17.550 20.218 hybrid contribution -0.403 -0.170 0.465 0.638 sum -5.762 8.320 -17.085 19.857 Atomic orbital electron populations 1.22471 0.95536 1.02745 1.03148 1.21545 0.93266 0.93325 0.85090 1.21763 1.02189 0.93054 1.02544 1.22467 1.02595 1.01060 0.97751 1.88090 1.74571 1.22838 1.43351 1.20553 0.97967 0.83149 0.91412 1.23766 0.88545 1.02138 0.97783 1.22405 1.02701 1.02642 0.90540 1.24046 0.91570 1.01267 0.98345 1.16410 0.86221 0.86821 0.82745 1.90611 1.31471 1.59114 1.66154 1.41799 1.17817 1.46007 1.10128 1.19824 1.05673 1.33553 0.84168 0.87184 1.25477 0.94772 0.96259 1.01278 1.69604 1.07649 1.36824 1.37854 0.85786 0.77901 0.78942 0.80882 1.19489 1.20663 1.19482 1.74241 1.22036 1.17992 0.90394 1.84756 1.33007 1.53672 1.24533 0.91353 0.91364 0.91996 0.91634 0.91074 0.91607 0.91963 0.91389 0.91382 0.90731 0.89692 0.80745 0.76491 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 8.25 37.16 0.31 -0.97 16 2 C 0.11 0.91 1.14 -90.62 -0.10 0.81 16 3 C -0.14 -1.07 8.84 37.16 0.33 -0.74 16 4 C -0.18 -1.27 8.25 37.16 0.31 -0.96 16 5 O -0.37 -4.45 9.97 -35.23 -0.35 -4.80 16 6 C 0.15 1.62 5.69 36.01 0.21 1.82 16 7 C -0.06 -0.92 7.10 -35.36 -0.25 -1.17 16 8 C -0.16 -2.92 10.92 -39.06 -0.43 -3.34 16 9 C 0.01 0.15 7.19 -82.54 -0.59 -0.44 16 10 C 0.49 13.10 7.79 -12.18 -0.09 13.00 16 11 O -0.59 -16.94 16.52 5.32 0.09 -16.85 16 12 N -0.52 -14.49 5.27 -11.75 -0.06 -14.55 16 13 C -0.30 -8.63 9.68 -15.02 -0.15 -8.77 16 14 H 0.11 3.20 7.15 -52.48 -0.38 2.83 16 15 C 0.03 0.73 5.50 -17.45 -0.10 0.63 16 16 N -0.88 -24.32 13.05 55.50 0.72 -23.60 16 17 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 N -0.34 -7.29 11.84 33.30 0.39 -6.90 16 22 O 0.11 2.03 11.18 17.19 0.19 2.22 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.67 6.42 -51.93 -0.33 0.34 16 33 H 0.09 0.75 6.42 -51.93 -0.33 0.42 16 34 H 0.18 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.40 10.98 7.65 -40.82 -0.31 10.67 16 36 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 313.15 15.07 4.72 4.72 Total: -1.00 -32.41 313.15 -4.43 -36.84 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.55 Total: 7.29 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.56 Total: -0.14 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 1.06 Total: -45.05 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.43 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.41 -4.43 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185147607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.150 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds