Wall clock time and date at job start Mon Mar 30 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00376 * 2 1 4 4 H 1.08998 * 110.32088 * 329.24209 * 3 2 1 5 5 C 1.55015 * 110.35783 * 206.91466 * 3 2 1 6 6 C 1.54260 * 102.36581 * 219.01508 * 5 3 2 7 7 H 1.08991 * 112.82807 * 277.26388 * 6 5 3 8 8 C 1.50944 * 111.73979 * 148.40287 * 6 5 3 9 9 O 1.21239 * 127.34239 * 57.60975 * 8 6 5 10 10 N 1.35145 * 105.29478 * 237.74041 * 8 6 5 11 11 C 1.46506 * 124.33876 * 182.52927 * 10 8 6 12 12 C 1.53002 * 109.47035 * 269.72482 * 11 10 8 13 13 C 1.50696 * 109.47300 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 89.99790 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00310 * 17 15 13 20 20 H 1.48507 * 109.46904 * 330.00133 * 17 15 13 21 21 C 1.34319 * 111.32630 * 2.26144 * 10 8 6 22 22 O 1.21541 * 124.22945 * 191.47572 * 21 10 8 23 23 N 1.33673 * 111.53902 * 11.44716 * 21 10 8 24 24 C 1.46571 * 149.45562 * 156.77426 * 23 21 10 25 25 H 1.09002 * 109.46508 * 59.99697 * 1 2 3 26 26 H 1.08998 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46767 * 300.00035 * 1 2 3 28 28 H 1.08997 * 110.82779 * 337.23753 * 5 3 2 29 29 H 1.08999 * 110.82740 * 100.79892 * 5 3 2 30 30 H 1.09004 * 109.47073 * 29.72165 * 11 10 8 31 31 H 1.09000 * 109.47212 * 149.72247 * 11 10 8 32 32 H 1.09004 * 109.46930 * 299.99770 * 12 11 10 33 33 H 1.09004 * 109.47059 * 59.99372 * 12 11 10 34 34 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 35 35 H 1.08998 * 110.02266 * 331.31061 * 24 23 21 36 36 H 1.08998 * 110.01804 * 92.71778 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3619 2.0085 -0.5227 5 6 3.4135 1.2708 -0.6579 6 6 4.2196 2.2393 0.2321 7 1 4.0787 3.2841 -0.0443 8 6 5.6723 1.8391 0.3209 9 8 6.4541 1.7002 -0.5952 10 7 5.9144 1.6659 1.6392 11 6 7.2230 1.3216 2.2008 12 6 7.3611 -0.2003 2.2762 13 6 8.7074 -0.5546 2.8533 14 1 9.3958 0.2275 3.1374 15 6 9.0602 -1.8771 3.0186 16 7 8.2221 -2.8296 2.6722 17 14 10.7288 -2.3163 3.7347 18 1 10.6220 -2.4180 5.2123 19 1 11.1783 -3.6183 3.1799 20 1 11.7123 -1.2613 3.3809 21 6 4.8029 1.8556 2.3690 22 8 4.7892 1.9565 3.5802 23 7 3.7138 1.9201 1.5968 24 6 2.2623 1.7811 1.4472 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8353 0.2665 -0.6188 29 1 3.3692 1.6340 -1.6846 30 1 8.0096 1.7266 1.5641 31 1 7.3116 1.7445 3.2015 32 1 6.5745 -0.6054 2.9129 33 1 7.2724 -0.6233 1.2755 34 1 8.4704 -3.7600 2.7881 35 1 1.8833 1.0430 2.1540 36 1 1.7763 2.7424 1.6140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349139429.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:37 Heat of formation + Delta-G solvation = -94.126335 kcal Electronic energy + Delta-G solvation = -20893.039062 eV Core-core repulsion = 17570.994753 eV Total energy + Delta-G solvation = -3322.044309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.62433 -39.80069 -39.64617 -37.67692 -36.94470 -35.31944 -33.03415 -31.62350 -30.08861 -27.62535 -26.88038 -25.99571 -23.82946 -22.88733 -22.19424 -21.02029 -18.86832 -18.75266 -18.10552 -17.53632 -17.34130 -16.99493 -16.58605 -16.23797 -15.82304 -15.66647 -15.50740 -15.00381 -14.75190 -14.53290 -14.31711 -13.71475 -13.45343 -13.12837 -12.90659 -12.79593 -12.74390 -12.66529 -12.16082 -12.12524 -12.06401 -11.77384 -11.51137 -11.20573 -10.82578 -10.67665 -10.65462 -9.96991 -8.28247 -6.42484 0.51806 0.89410 1.38711 1.41682 1.52967 1.79967 2.09648 2.38093 2.71826 3.01849 3.05827 3.10386 3.62075 3.92632 4.00572 4.04814 4.22264 4.33684 4.36958 4.45607 4.52934 4.60640 4.65138 4.65915 4.69977 4.89592 4.95333 4.97229 5.28469 5.30088 5.60122 5.67565 6.03200 6.11872 6.28608 6.33005 6.71423 6.95573 7.27907 8.84913 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.004804 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.754065 B = 5826.976526 C = 6099.274904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.409 6.409 3 C 0.084 3.916 4 H 0.144 0.856 5 C -0.110 4.110 6 C 0.061 3.939 7 H 0.191 0.809 8 C 0.516 3.484 9 O -0.498 6.498 10 N -0.584 5.584 11 C 0.135 3.865 12 C 0.025 3.975 13 C -0.547 4.547 14 H 0.073 0.927 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.257 1.257 21 C 0.733 3.267 22 O -0.576 6.576 23 N -0.641 5.641 24 C 0.128 3.872 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.087 0.913 32 H -0.017 1.017 33 H -0.011 1.011 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 12.668 -8.908 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.328 6.328 3 C 0.025 3.975 4 H 0.162 0.838 5 C -0.149 4.149 6 C -0.047 4.047 7 H 0.208 0.792 8 C 0.305 3.695 9 O -0.370 6.370 10 N -0.329 5.329 11 C 0.014 3.986 12 C -0.013 4.013 13 C -0.585 4.585 14 H 0.091 0.909 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.801 3.199 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.181 1.181 21 C 0.437 3.563 22 O -0.452 6.452 23 N -0.382 5.382 24 C 0.010 3.990 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.001 0.999 33 H 0.008 0.992 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.514 12.240 -8.461 22.982 hybrid contribution 0.862 -0.788 0.722 1.373 sum -16.653 11.452 -7.739 21.641 Atomic orbital electron populations 1.23064 0.78781 1.03791 1.01836 1.88038 1.22197 1.27851 1.94733 1.23559 0.94824 0.86244 0.92841 0.83827 1.22623 0.93275 0.98349 1.00612 1.23785 0.88633 1.05291 0.86943 0.79238 1.21502 0.91931 0.74708 0.81364 1.90751 1.55501 1.49057 1.41698 1.47058 1.11881 1.64323 1.09645 1.21762 0.79866 0.97451 0.99489 1.19177 0.96555 0.90544 0.94989 1.21471 1.01282 0.93059 1.42675 0.90857 1.26095 1.02039 0.96206 0.95496 1.70130 1.38204 1.00439 1.48599 0.85263 0.78275 0.77918 0.78475 1.19608 1.20550 1.18063 1.15087 0.79961 0.77133 0.84128 1.90903 1.85584 1.55985 1.12691 1.48364 1.07333 1.72959 1.09584 1.22870 0.73147 1.04045 0.98970 0.91291 0.89689 0.92501 0.92600 0.84405 0.88811 0.89489 0.99857 0.99245 0.92534 0.90742 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.87 113.37 1.23 1.45 16 2 O -0.41 -7.84 10.32 -148.98 -1.54 -9.38 16 3 C 0.08 1.13 3.48 31.76 0.11 1.24 16 4 H 0.14 0.48 7.85 -2.39 -0.02 0.47 16 5 C -0.11 -2.02 6.33 31.71 0.20 -1.82 16 6 C 0.06 1.33 4.04 44.27 0.18 1.51 16 7 H 0.19 2.19 8.14 -2.39 -0.02 2.17 16 8 C 0.52 17.95 7.64 87.68 0.67 18.62 16 9 O -0.50 -20.03 17.81 -2.90 -0.05 -20.09 16 10 N -0.58 -23.74 2.63 -773.36 -2.03 -25.77 16 11 C 0.13 6.24 5.72 86.38 0.49 6.74 16 12 C 0.03 1.46 5.30 29.85 0.16 1.62 16 13 C -0.55 -32.61 9.11 25.60 0.23 -32.37 16 14 H 0.07 4.07 7.74 -2.91 -0.02 4.05 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -59.68 13.29 21.45 0.28 -59.39 16 17 Si 0.98 45.67 29.54 68.60 2.03 47.70 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 C 0.73 28.72 8.49 179.54 1.52 30.25 16 22 O -0.58 -26.86 17.52 -3.85 -0.07 -26.93 16 23 N -0.64 -17.81 4.11 -810.28 -3.33 -21.14 16 24 C 0.13 2.23 7.41 86.84 0.64 2.87 16 25 H 0.07 0.39 8.10 -2.39 -0.02 0.37 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 1.53 7.94 -2.39 -0.02 1.51 16 29 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 4.11 8.04 -2.38 -0.02 4.09 16 31 H 0.09 3.98 7.82 -2.39 -0.02 3.96 16 32 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.07 1.56 7.98 -2.39 -0.02 1.54 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -85.49 311.14 2.28 -83.21 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.08 Total: 1.23 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 5.91 Total: 30.56 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.08 Total: -106.30 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -1.66 Total: -56.39 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -85.49 2.28 -83.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349139429.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.915 kcal (2) G-P(sol) polarization free energy of solvation -85.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds