Wall clock time and date at job start Mon Mar 30 2020 01:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34423 * 124.34671 * 2 1 4 4 O 1.21276 * 124.94391 * 0.35884 * 3 2 1 5 5 C 1.51280 * 110.11200 * 180.38663 * 3 2 1 6 6 C 1.54629 * 104.19875 * 16.25007 * 5 3 2 7 7 C 1.46762 * 124.34860 * 179.97438 * 2 1 3 8 8 H 1.08993 * 110.24929 * 282.08984 * 7 2 1 9 9 C 1.50700 * 110.24537 * 44.00762 * 7 2 1 10 10 O 1.21282 * 119.99850 * 18.54493 * 9 7 2 11 11 N 1.34772 * 119.99909 * 198.53849 * 9 7 2 12 12 C 1.47587 * 134.49330 * 179.97438 * 11 9 7 13 13 C 1.53946 * 86.11583 * 155.36547 * 12 11 9 14 14 O 1.42902 * 113.74085 * 269.15576 * 13 12 11 15 15 C 1.50698 * 113.74002 * 137.95289 * 13 12 11 16 16 H 1.07994 * 120.00418 * 245.36057 * 15 13 12 17 17 C 1.37883 * 119.99682 * 65.35987 * 15 13 12 18 18 N 1.31512 * 119.99924 * 355.19331 * 17 15 13 19 19 Si 1.86798 * 119.99797 * 175.18721 * 17 15 13 20 20 H 1.48505 * 109.47001 * 90.00186 * 19 17 15 21 21 H 1.48503 * 109.47483 * 330.00162 * 19 17 15 22 22 H 1.48502 * 109.47292 * 210.00311 * 19 17 15 23 23 C 1.47577 * 134.49313 * 0.02562 * 11 9 7 24 24 H 1.09008 * 109.47063 * 270.02631 * 1 2 3 25 25 H 1.08995 * 109.47185 * 30.02812 * 1 2 3 26 26 H 1.08998 * 109.46767 * 150.02931 * 1 2 3 27 27 H 1.09002 * 110.48279 * 134.92882 * 5 3 2 28 28 H 1.08995 * 110.48641 * 257.43789 * 5 3 2 29 29 H 1.08997 * 110.96682 * 217.08395 * 6 5 3 30 30 H 1.09003 * 110.96719 * 93.31894 * 6 5 3 31 31 H 1.09002 * 113.76380 * 41.06941 * 12 11 9 32 32 H 1.08995 * 113.76850 * 269.67030 * 12 11 9 33 33 H 0.96704 * 113.99471 * 173.06187 * 14 13 12 34 34 H 0.96999 * 120.00110 * 5.10426 * 18 17 15 35 35 H 1.08998 * 113.77320 * 90.33559 * 23 11 9 36 36 H 1.08998 * 113.76908 * 318.93064 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7946 2.2442 0.0062 5 6 3.6898 0.7379 -0.0096 6 6 3.7012 -0.7488 -0.4348 7 6 2.2931 -1.2117 0.0005 8 1 2.3291 -1.6435 1.0006 9 6 1.7477 -2.2165 -0.9813 10 8 0.9881 -1.8585 -1.8564 11 7 2.1042 -3.5128 -0.8870 12 6 1.7767 -4.7336 -1.6489 13 6 3.1195 -5.2866 -1.1380 14 8 4.2212 -5.0160 -2.0069 15 6 3.0556 -6.7276 -0.7016 16 1 3.2133 -6.9854 0.3352 17 6 2.7956 -7.7170 -1.6262 18 7 2.5102 -7.3966 -2.8693 19 14 2.8491 -9.5122 -1.1129 20 1 1.5026 -9.9353 -0.6509 21 1 3.8275 -9.6826 -0.0088 22 1 3.2596 -10.3462 -2.2711 23 6 2.9781 -4.2817 0.0201 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 4.2328 1.3458 -0.7332 28 1 4.1197 0.8555 0.9851 29 1 4.4754 -1.3009 0.0979 30 1 3.8274 -0.8450 -1.5132 31 1 1.7458 -4.5829 -2.7280 32 1 0.9074 -5.2693 -1.2678 33 1 5.0808 -5.2670 -1.6420 34 1 2.5549 -6.4704 -3.1540 35 1 2.4613 -4.6850 0.8910 36 1 3.9066 -3.7703 0.2740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408161262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:35 Heat of formation + Delta-G solvation = -76.212852 kcal Electronic energy + Delta-G solvation = -21109.234395 eV Core-core repulsion = 17787.966872 eV Total energy + Delta-G solvation = -3321.267522 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87846 -39.47557 -37.74312 -36.03639 -34.27219 -32.86938 -32.58447 -29.54282 -27.48505 -26.65764 -25.56149 -24.78097 -22.54938 -20.70238 -19.57348 -18.62971 -17.96982 -17.14234 -16.67334 -15.94703 -15.88989 -15.15962 -15.01531 -14.51383 -13.96875 -13.90821 -13.74101 -13.41461 -13.22479 -12.84454 -12.62007 -12.58967 -12.20659 -11.97552 -11.88254 -11.58208 -11.38346 -11.26903 -10.93064 -10.39844 -10.25952 -9.96729 -9.75841 -9.36194 -8.83320 -8.71899 -8.45542 -8.05381 -6.60263 -4.49046 2.46649 2.68790 2.92747 3.29461 3.30502 3.34154 3.48560 4.17361 4.26852 4.31893 4.52837 4.79850 4.85616 5.00056 5.15126 5.19931 5.34206 5.44339 5.49959 5.53806 5.64305 5.78085 5.84531 5.87206 5.98304 6.13106 6.32224 6.41371 6.43031 6.82713 7.01833 7.58783 8.05771 8.07012 8.14895 8.42264 8.55028 8.77914 9.35302 10.77205 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042940 B = 0.004558 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.922441 B = 6140.990779 C = 6360.733343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.598 5.598 3 C 0.519 3.481 4 O -0.536 6.536 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.118 3.882 8 H 0.100 0.900 9 C 0.521 3.479 10 O -0.545 6.545 11 N -0.629 5.629 12 C 0.129 3.871 13 C 0.217 3.783 14 O -0.562 6.562 15 C -0.640 4.640 16 H 0.061 0.939 17 C 0.040 3.960 18 N -0.885 5.885 19 Si 1.071 2.929 20 H -0.286 1.286 21 H -0.286 1.286 22 H -0.283 1.283 23 C 0.072 3.928 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.366 0.634 34 H 0.282 0.718 35 H 0.088 0.912 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 7.826 8.446 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.332 5.332 3 C 0.307 3.693 4 O -0.413 6.413 5 C -0.192 4.192 6 C -0.155 4.155 7 C 0.010 3.990 8 H 0.118 0.882 9 C 0.308 3.692 10 O -0.424 6.424 11 N -0.363 5.363 12 C 0.007 3.993 13 C 0.176 3.824 14 O -0.367 6.367 15 C -0.677 4.677 16 H 0.079 0.921 17 C -0.170 4.170 18 N -0.518 5.518 19 Si 0.899 3.101 20 H -0.212 1.212 21 H -0.212 1.212 22 H -0.208 1.208 23 C -0.051 4.051 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.213 0.787 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.614 7.529 7.017 10.418 hybrid contribution 0.579 1.224 1.030 1.701 sum 2.193 8.753 8.047 12.090 Atomic orbital electron populations 1.21675 0.77470 1.04495 1.01196 1.47857 1.06846 1.05840 1.72635 1.20848 0.89299 0.84129 0.75038 1.90705 1.78818 1.20841 1.50940 1.22357 0.94757 0.97234 1.04891 1.22556 0.94216 0.95062 1.03706 1.21577 0.91805 0.86093 0.99555 0.88232 1.20136 0.81309 0.82035 0.85703 1.90674 1.36687 1.78799 1.36229 1.50259 1.47068 1.05232 1.33760 1.23528 0.99072 0.79564 0.97116 1.20214 0.84716 0.92520 0.84926 1.86379 1.17017 1.86497 1.46805 1.22151 1.58057 0.90374 0.97147 0.92052 1.25876 0.91911 1.05521 0.93730 1.70686 1.40261 1.23290 1.17607 0.83513 0.76796 0.74324 0.75487 1.21227 1.21240 1.20831 1.24190 0.92715 0.91640 0.96525 0.92967 0.90724 0.89612 0.87623 0.87460 0.88199 0.89225 0.91072 0.89030 0.78701 0.90561 0.89400 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.43 59.85 0.62 1.94 16 2 N -0.60 -8.81 3.00 -174.02 -0.52 -9.33 16 3 C 0.52 7.69 8.02 -10.86 -0.09 7.61 16 4 O -0.54 -9.70 17.59 5.56 0.10 -9.60 16 5 C -0.15 -1.58 6.86 -26.74 -0.18 -1.77 16 6 C -0.12 -1.30 6.68 -25.10 -0.17 -1.47 16 7 C 0.12 1.60 3.46 -68.16 -0.24 1.37 16 8 H 0.10 1.15 8.13 -51.93 -0.42 0.72 16 9 C 0.52 9.38 6.75 -10.99 -0.07 9.31 16 10 O -0.55 -11.73 15.32 5.56 0.09 -11.65 16 11 N -0.63 -11.72 3.61 -178.29 -0.64 -12.36 16 12 C 0.13 2.80 6.98 -2.97 -0.02 2.78 16 13 C 0.22 4.61 0.95 -90.83 -0.09 4.53 16 14 O -0.56 -12.08 13.01 -35.23 -0.46 -12.54 16 15 C -0.64 -15.15 8.58 -34.44 -0.30 -15.44 16 16 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 17 C 0.04 0.99 5.41 -17.82 -0.10 0.90 16 18 N -0.88 -24.29 13.48 55.43 0.75 -23.55 16 19 Si 1.07 22.31 29.91 -169.99 -5.08 17.23 16 20 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.29 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 C 0.07 1.22 8.00 -2.96 -0.02 1.19 16 24 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 26 H 0.09 1.33 5.98 -51.93 -0.31 1.02 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 31 H 0.07 1.70 7.63 -51.93 -0.40 1.30 16 32 H 0.09 2.02 8.09 -51.93 -0.42 1.60 16 33 H 0.37 6.58 9.09 45.56 0.41 6.99 16 34 H 0.28 7.86 5.68 -40.82 -0.23 7.63 16 35 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -31.95 306.41 -5.73 -37.68 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.93 Total: 8.56 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -0.65 Total: 10.94 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.42 Total: -45.24 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.28 Total: -33.79 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.08 Total: 17.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.95 -5.73 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408161262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.533 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds