Wall clock time and date at job start Mon Mar 30 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.46731 * 2 1 4 4 O 1.45702 * 110.52212 * 122.78420 * 2 1 3 5 5 C 1.33767 * 109.47435 * 118.63414 * 4 2 1 6 6 O 1.21517 * 123.06954 * 180.02562 * 5 4 2 7 7 N 1.34324 * 113.90717 * 0.08246 * 5 4 2 8 8 C 1.47091 * 108.70062 * 359.86424 * 7 5 4 9 9 H 1.09006 * 110.56323 * 118.77405 * 8 7 5 10 10 C 1.50702 * 110.56647 * 241.47658 * 8 7 5 11 11 O 1.21282 * 119.99831 * 16.55951 * 10 8 7 12 12 N 1.34778 * 119.99870 * 196.55860 * 10 8 7 13 13 C 1.46500 * 119.99834 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46845 * 184.74550 * 13 12 10 15 15 C 1.50697 * 115.54864 * 294.81949 * 14 13 12 16 16 H 1.07997 * 120.00292 * 99.27128 * 15 14 13 17 17 C 1.37877 * 120.00317 * 279.27379 * 15 14 13 18 18 N 1.31517 * 120.00113 * 5.29397 * 17 15 14 19 19 Si 1.86797 * 120.00296 * 185.29764 * 17 15 14 20 20 H 1.48495 * 109.47281 * 179.97438 * 19 17 15 21 21 H 1.48505 * 109.47009 * 300.00029 * 19 17 15 22 22 H 1.48503 * 109.47031 * 59.99588 * 19 17 15 23 23 C 1.52998 * 117.52235 * 80.52468 * 14 13 12 24 24 C 1.53000 * 117.49661 * 149.15805 * 14 13 12 25 25 H 1.08996 * 109.46946 * 182.62691 * 1 2 3 26 26 H 1.08996 * 109.47290 * 302.62944 * 1 2 3 27 27 H 1.09007 * 109.47250 * 62.62590 * 1 2 3 28 28 H 0.97001 * 125.74132 * 179.97438 * 7 5 4 29 29 H 0.97003 * 120.00237 * 0.02562 * 12 10 8 30 30 H 1.09000 * 109.47078 * 64.74111 * 13 12 10 31 31 H 1.09000 * 109.47126 * 304.74078 * 13 12 10 32 32 H 0.97001 * 120.00422 * 174.99470 * 18 17 15 33 33 H 1.08993 * 117.49934 * 214.96759 * 23 14 13 34 34 H 1.08999 * 117.49799 * 359.97438 * 23 14 13 35 35 H 1.09002 * 117.49953 * 359.97003 * 24 14 13 36 36 H 1.09004 * 117.49890 * 144.99482 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 8 2.0408 -0.7389 1.1472 5 6 2.7631 -1.7809 0.7208 6 8 3.3050 -2.5649 1.4747 7 7 2.8364 -1.8817 -0.6166 8 6 2.0701 -0.7781 -1.2154 9 1 2.7200 -0.1437 -1.8182 10 6 0.9343 -1.3133 -2.0487 11 8 0.5738 -2.4636 -1.9152 12 7 0.3190 -0.5137 -2.9423 13 6 -0.7856 -1.0338 -3.7520 14 6 -1.2244 0.0306 -4.7597 15 6 -1.8216 1.2804 -4.1663 16 1 -1.2159 2.1673 -4.0533 17 6 -3.1414 1.2917 -3.7675 18 7 -3.8500 0.1845 -3.8076 19 14 -3.9231 2.8797 -3.1702 20 1 -5.3396 2.6267 -2.8034 21 1 -3.1850 3.3784 -1.9821 22 1 -3.8662 3.8965 -4.2511 23 6 -0.3935 0.1816 -6.0355 24 6 -1.7844 -0.4529 -6.0990 25 1 -0.3633 -1.0266 0.0471 26 1 -0.3634 0.5541 0.8654 27 1 -0.3634 0.4725 -0.9126 28 1 3.3136 -2.5687 -1.1077 29 1 0.6076 0.4062 -3.0494 30 1 -1.6238 -1.2874 -3.1030 31 1 -0.4564 -1.9255 -4.2856 32 1 -4.7554 0.1752 -3.4596 33 1 -0.2788 1.1849 -6.4456 34 1 0.4663 -0.4772 -6.1570 35 1 -1.8397 -1.5292 -6.2624 36 1 -2.5847 0.1332 -6.5509 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496275774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:57 Heat of formation + Delta-G solvation = -106.586992 kcal Electronic energy + Delta-G solvation = -21090.770725 eV Core-core repulsion = 17768.186081 eV Total energy + Delta-G solvation = -3322.584644 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.99939 -40.52586 -38.60338 -38.30379 -35.72872 -35.11953 -33.95654 -32.98140 -28.96202 -27.62164 -26.69257 -24.16263 -23.43689 -22.92283 -21.43679 -21.09945 -19.31288 -18.88442 -17.99885 -17.65168 -17.18350 -16.82434 -16.64513 -16.27834 -15.74622 -15.46587 -15.31329 -14.97544 -14.53148 -14.28291 -13.98076 -13.51387 -13.45430 -13.15531 -12.87956 -12.73631 -12.61012 -12.36197 -12.02774 -12.01415 -11.91551 -11.51527 -11.36023 -10.82069 -10.46169 -10.38484 -9.99721 -9.83019 -8.05461 -6.18750 1.36163 1.47324 1.48186 1.52056 1.56442 1.64341 2.08690 2.46647 2.57790 3.01623 3.24059 3.40829 3.59897 3.73633 3.90071 4.20203 4.25352 4.29188 4.59543 4.69091 4.70431 4.73922 4.77475 5.04015 5.06433 5.16850 5.31357 5.56367 5.62819 5.66774 5.68185 5.83431 6.07855 6.40871 6.67548 6.89675 6.91846 7.29408 7.52237 9.01707 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.005700 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.485710 B = 4910.776906 C = 5658.329818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 H 0.184 0.816 4 O -0.333 6.333 5 C 0.648 3.352 6 O -0.570 6.570 7 N -0.699 5.699 8 C 0.085 3.915 9 H 0.183 0.817 10 C 0.501 3.499 11 O -0.585 6.585 12 N -0.684 5.684 13 C 0.180 3.820 14 C 0.010 3.990 15 C -0.499 4.499 16 H 0.073 0.927 17 C 0.029 3.971 18 N -0.910 5.910 19 Si 0.943 3.057 20 H -0.301 1.301 21 H -0.261 1.261 22 H -0.274 1.274 23 C -0.172 4.172 24 C -0.172 4.172 25 H 0.035 0.965 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.445 0.555 29 H 0.417 0.583 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.257 0.743 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.653 5.115 1.300 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.201 0.799 4 O -0.243 6.243 5 C 0.402 3.598 6 O -0.458 6.458 7 N -0.371 5.371 8 C -0.024 4.024 9 H 0.200 0.800 10 C 0.285 3.715 11 O -0.465 6.465 12 N -0.334 5.334 13 C 0.056 3.944 14 C 0.009 3.991 15 C -0.536 4.536 16 H 0.091 0.909 17 C -0.172 4.172 18 N -0.547 5.547 19 Si 0.769 3.231 20 H -0.228 1.228 21 H -0.186 1.186 22 H -0.200 1.200 23 C -0.209 4.209 24 C -0.210 4.210 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.289 0.711 29 H 0.255 0.745 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.313 4.065 2.068 12.198 hybrid contribution -1.044 0.242 -0.200 1.090 sum 10.269 4.307 1.868 11.292 Atomic orbital electron populations 1.22352 0.92761 1.02604 1.05769 1.24275 0.95945 0.97976 0.78688 0.79903 1.87300 1.63361 1.39022 1.34599 1.18636 0.77764 0.80473 0.82963 1.91020 1.51605 1.43884 1.59296 1.45688 1.53942 1.32411 1.05034 1.22754 0.93474 0.89697 0.96479 0.80007 1.20937 0.84113 0.85941 0.80476 1.90730 1.66753 1.20239 1.68811 1.45801 1.33972 1.15688 1.37965 1.20539 0.87009 0.94497 0.92383 1.19069 0.98980 0.95319 0.85730 1.20657 0.95019 0.96531 1.41443 0.90935 1.25643 0.97772 0.98071 0.95720 1.70089 1.10591 1.28211 1.45859 0.85852 0.77143 0.80888 0.79171 1.22754 1.18574 1.19975 1.22985 0.93077 1.01099 1.03736 1.22485 0.96321 0.97817 1.04392 0.94585 0.88950 0.88321 0.71066 0.74522 0.94819 0.94755 0.93419 0.89362 0.89165 0.91540 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 8.47 71.98 0.61 -3.70 16 2 C 0.09 1.60 4.50 30.96 0.14 1.74 16 3 H 0.18 1.51 8.14 -2.38 -0.02 1.49 16 4 O -0.33 -8.94 10.80 -47.28 -0.51 -9.45 16 5 C 0.65 19.51 9.16 129.86 1.19 20.70 16 6 O -0.57 -21.67 18.04 19.63 0.35 -21.31 16 7 N -0.70 -16.08 5.67 -572.79 -3.25 -19.33 16 8 C 0.09 1.59 4.16 44.50 0.19 1.78 16 9 H 0.18 1.42 8.14 -2.38 -0.02 1.40 16 10 C 0.50 14.40 5.05 87.66 0.44 14.84 16 11 O -0.58 -23.05 16.45 -3.04 -0.05 -23.10 16 12 N -0.68 -19.94 4.36 -463.05 -2.02 -21.96 16 13 C 0.18 7.11 5.51 86.38 0.48 7.59 16 14 C 0.01 0.40 1.32 -52.93 -0.07 0.33 16 15 C -0.50 -22.12 8.57 25.60 0.22 -21.90 16 16 H 0.07 3.00 7.82 -2.91 -0.02 2.97 16 17 C 0.03 1.38 5.42 84.65 0.46 1.84 16 18 N -0.91 -48.10 13.08 21.45 0.28 -47.82 16 19 Si 0.94 38.38 29.54 68.60 2.03 40.40 16 20 H -0.30 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 C -0.17 -5.88 9.96 30.60 0.30 -5.58 16 24 C -0.17 -7.12 9.65 30.60 0.30 -6.83 16 25 H 0.03 1.14 7.46 -2.39 -0.02 1.12 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.50 6.71 -2.38 -0.02 2.48 16 28 H 0.44 9.02 8.96 -92.71 -0.83 8.19 16 29 H 0.42 9.69 8.33 -92.71 -0.77 8.92 16 30 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.26 13.38 8.32 -92.71 -0.77 12.61 16 33 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 Total: -1.00 -68.96 311.86 0.60 -68.35 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.49 Total: 23.41 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.25 Total: 10.80 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -4.98 Total: -89.11 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -0.21 Total: -53.86 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.40 kcal Total: -68.96 0.60 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496275774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.233 kcal (2) G-P(sol) polarization free energy of solvation -68.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds