Wall clock time and date at job start Mon Mar 30 2020 00:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46910 * 109.47039 * 2 1 4 4 C 1.46899 * 110.99745 * 298.11725 * 3 2 1 5 5 C 1.50703 * 109.47097 * 292.91631 * 4 3 2 6 6 H 1.07995 * 120.00279 * 354.95836 * 5 4 3 7 7 C 1.37880 * 119.99716 * 174.96019 * 5 4 3 8 8 N 1.31513 * 120.00099 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99750 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47004 * 59.99740 * 9 7 5 11 11 H 1.48497 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46980 * 300.00013 * 9 7 5 13 13 C 1.46897 * 111.00026 * 62.07078 * 3 2 1 14 14 C 1.50701 * 109.47239 * 66.04812 * 13 3 2 15 15 C 1.35304 * 126.66176 * 90.32720 * 14 13 3 16 16 C 1.42304 * 103.91951 * 180.10824 * 15 14 13 17 17 C 1.48243 * 126.94214 * 179.85230 * 16 15 14 18 18 O 1.21407 * 119.99936 * 359.71418 * 17 16 15 19 19 O 1.34646 * 120.00105 * 179.71011 * 17 16 15 20 20 C 1.45194 * 117.00160 * 180.02562 * 19 17 16 21 21 N 1.31006 * 106.11327 * 359.59307 * 16 15 14 22 22 O 1.20903 * 111.43509 * 0.26045 * 21 16 15 23 23 H 1.09000 * 109.46754 * 179.64481 * 1 2 3 24 24 H 1.08996 * 109.47002 * 299.64592 * 1 2 3 25 25 H 1.08993 * 109.46697 * 59.64803 * 1 2 3 26 26 H 1.08997 * 109.47241 * 239.99944 * 2 1 3 27 27 H 1.08996 * 109.47188 * 119.99513 * 2 1 3 28 28 H 1.08999 * 109.47365 * 52.91873 * 4 3 2 29 29 H 1.09004 * 109.47174 * 172.91538 * 4 3 2 30 30 H 0.97006 * 119.99830 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47344 * 306.04795 * 13 3 2 32 32 H 1.08997 * 109.47207 * 186.05043 * 13 3 2 33 33 H 1.08005 * 128.04009 * 359.97438 * 15 14 13 34 34 H 1.09003 * 109.46966 * 299.99657 * 20 19 17 35 35 H 1.08997 * 109.47432 * 59.99888 * 20 19 17 36 36 H 1.09007 * 109.47439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5858 2.0968 -1.2096 5 6 2.2654 1.4996 -2.4148 6 1 3.0116 0.7293 -2.2877 7 6 1.9346 1.9367 -3.6800 8 7 1.0256 2.8744 -3.8349 9 14 2.7765 1.1960 -5.1740 10 1 2.5113 -0.2645 -5.2182 11 1 2.2469 1.8323 -6.4068 12 1 4.2400 1.4308 -5.0846 13 6 1.5896 2.0955 1.2117 14 6 2.2533 1.4807 2.4168 15 6 3.4389 1.8429 2.9589 16 6 3.5976 0.9551 4.0596 17 6 4.7353 0.9072 5.0089 18 8 5.6636 1.6794 4.8832 19 8 4.7390 0.0074 6.0105 20 6 5.8849 0.0182 6.9021 21 7 2.5326 0.1923 4.0680 22 8 1.7808 0.4732 3.1637 23 1 -0.3633 -1.0277 -0.0064 24 1 -0.3633 0.5083 0.8931 25 1 -0.3632 0.5193 -0.8868 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 0.5053 2.0034 -1.3183 29 1 1.8528 3.1504 -1.1267 30 1 0.7925 3.1817 -4.7250 31 1 0.5072 2.0175 1.3137 32 1 1.8727 3.1454 1.1371 33 1 4.1101 2.6230 2.6310 34 1 6.7921 -0.1766 6.3301 35 1 5.9613 0.9929 7.3838 36 1 5.7617 -0.7541 7.6615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602438485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:07 Heat of formation + Delta-G solvation = -11.690063 kcal Electronic energy + Delta-G solvation = -20215.096522 eV Core-core repulsion = 16896.626917 eV Total energy + Delta-G solvation = -3318.469604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.08704 -40.50321 -37.54971 -36.76869 -34.12239 -32.99045 -32.11830 -29.54355 -28.35744 -27.60194 -25.19986 -24.73703 -23.31945 -22.64083 -20.75183 -19.67212 -17.85407 -17.55801 -17.32670 -16.54903 -16.52252 -16.19998 -15.26732 -14.96768 -14.36051 -14.16477 -13.70813 -13.59729 -13.26929 -13.05576 -12.52435 -12.38689 -12.00015 -11.79713 -11.41405 -11.17146 -11.11641 -11.07642 -11.04698 -10.79064 -10.63630 -10.56737 -10.14039 -9.95743 -9.47979 -9.26455 -8.48728 -7.41125 -6.08749 -4.10081 0.86493 1.65108 2.18992 2.75196 3.01563 3.31171 3.35515 3.38682 3.87009 4.38073 4.53734 4.80128 4.89178 4.90231 4.95790 5.08920 5.25783 5.27199 5.36358 5.67938 5.73471 5.80421 5.92487 5.95524 5.99132 6.08058 6.36722 6.60705 6.82512 7.13992 7.30682 7.34099 7.69759 7.91661 8.00726 8.04499 8.40563 8.97052 9.54422 11.01746 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.003882 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.520453 B = 7211.487347 C = 7609.072757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.122 3.878 14 C 0.004 3.996 15 C -0.170 4.170 16 C -0.022 4.022 17 C 0.555 3.445 18 O -0.487 6.487 19 O -0.345 6.345 20 C 0.036 3.964 21 N -0.316 5.316 22 O 0.130 5.870 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.010 0.990 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.184 0.816 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -3.626 16.628 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.255 5.255 4 C 0.065 3.935 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.007 4.007 14 C -0.059 4.059 15 C -0.194 4.194 16 C -0.178 4.178 17 C 0.397 3.603 18 O -0.372 6.372 19 O -0.260 6.260 20 C -0.058 4.058 21 N -0.014 5.014 22 O 0.050 5.950 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.202 0.798 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.340 -4.300 17.328 18.163 hybrid contribution 0.191 0.295 -1.108 1.163 sum 3.530 -4.005 16.219 17.076 Atomic orbital electron populations 1.22380 0.98821 1.01513 1.02077 1.22029 0.92596 0.90807 1.01669 1.62479 1.59245 1.02316 1.01446 1.19845 0.95184 0.93733 0.84733 1.21060 1.22116 1.21618 0.89870 0.91862 1.24957 0.95220 0.95189 0.99046 1.69933 1.31749 1.29026 1.23044 0.86563 0.79868 0.79280 0.81735 1.20257 1.21374 1.20150 1.20733 0.97340 0.97724 0.84951 1.24782 0.95112 0.89840 0.96153 1.22345 0.98295 1.03532 0.95202 1.22198 0.95729 1.00014 0.99832 1.19551 0.83860 0.78007 0.78865 1.90868 1.34802 1.39615 1.71907 1.86612 1.46073 1.54368 1.38973 1.23372 0.86655 1.03547 0.92182 1.74293 1.01950 1.18965 1.06225 1.84826 1.39474 1.41235 1.29467 0.93042 0.93492 0.91013 0.89537 0.93178 0.97253 0.95289 0.92792 0.92241 0.87437 0.79819 0.91467 0.91531 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.26 37.16 0.34 -2.80 16 2 C 0.06 1.04 5.71 -3.82 -0.02 1.02 16 3 N -0.53 -10.30 4.69 -237.51 -1.11 -11.42 16 4 C 0.19 4.46 4.53 -4.97 -0.02 4.43 16 5 C -0.51 -13.43 8.40 -34.44 -0.29 -13.72 16 6 H 0.06 1.68 7.38 -52.49 -0.39 1.29 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 9 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.12 1.89 5.32 -4.98 -0.03 1.86 16 14 C 0.00 0.06 6.03 -35.35 -0.21 -0.15 16 15 C -0.17 -2.47 10.92 -39.07 -0.43 -2.90 16 16 C -0.02 -0.33 7.24 -82.54 -0.60 -0.93 16 17 C 0.56 8.05 7.99 34.84 0.28 8.32 16 18 O -0.49 -7.66 16.74 -19.19 -0.32 -7.98 16 19 O -0.34 -4.36 10.57 -40.35 -0.43 -4.78 16 20 C 0.04 0.30 10.56 101.05 1.07 1.36 16 21 N -0.32 -4.90 12.12 33.29 0.40 -4.50 16 22 O 0.13 1.95 10.55 17.24 0.18 2.13 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 25 H 0.07 1.37 6.28 -51.93 -0.33 1.04 16 26 H 0.09 1.73 6.99 -51.93 -0.36 1.37 16 27 H 0.05 0.85 6.73 -51.93 -0.35 0.50 16 28 H 0.01 0.24 6.01 -51.93 -0.31 -0.07 16 29 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 0.87 6.07 -51.93 -0.32 0.55 16 32 H 0.11 1.54 7.92 -51.93 -0.41 1.13 16 33 H 0.18 2.42 8.06 -52.48 -0.42 1.99 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -29.67 310.75 -5.33 -35.00 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -4.45 Total: -2.38 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.00 Total: -2.04 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.03 Total: -40.59 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.57 Total: -10.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.67 -5.33 -35.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.311 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds