Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46910 * 109.47039 * 2 1 4 4 C 1.46899 * 110.99745 * 298.11725 * 3 2 1 5 5 C 1.50703 * 109.47097 * 292.91631 * 4 3 2 6 6 H 1.07995 * 120.00279 * 354.95836 * 5 4 3 7 7 C 1.37880 * 119.99716 * 174.96019 * 5 4 3 8 8 N 1.31513 * 120.00099 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99750 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47004 * 59.99740 * 9 7 5 11 11 H 1.48497 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46980 * 300.00013 * 9 7 5 13 13 C 1.46897 * 111.00026 * 62.07078 * 3 2 1 14 14 C 1.50701 * 109.47239 * 66.04812 * 13 3 2 15 15 C 1.35304 * 126.66176 * 90.32720 * 14 13 3 16 16 C 1.42304 * 103.91951 * 180.10824 * 15 14 13 17 17 C 1.48243 * 126.94214 * 179.85230 * 16 15 14 18 18 O 1.21407 * 119.99936 * 359.71418 * 17 16 15 19 19 O 1.34646 * 120.00105 * 179.71011 * 17 16 15 20 20 C 1.45194 * 117.00160 * 180.02562 * 19 17 16 21 21 N 1.31006 * 106.11327 * 359.59307 * 16 15 14 22 22 O 1.20903 * 111.43509 * 0.26045 * 21 16 15 23 23 H 1.09000 * 109.46754 * 179.64481 * 1 2 3 24 24 H 1.08996 * 109.47002 * 299.64592 * 1 2 3 25 25 H 1.08993 * 109.46697 * 59.64803 * 1 2 3 26 26 H 1.08997 * 109.47241 * 239.99944 * 2 1 3 27 27 H 1.08996 * 109.47188 * 119.99513 * 2 1 3 28 28 H 1.08999 * 109.47365 * 52.91873 * 4 3 2 29 29 H 1.09004 * 109.47174 * 172.91538 * 4 3 2 30 30 H 0.97006 * 119.99830 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47344 * 306.04795 * 13 3 2 32 32 H 1.08997 * 109.47207 * 186.05043 * 13 3 2 33 33 H 1.08005 * 128.04009 * 359.97438 * 15 14 13 34 34 H 1.09003 * 109.46966 * 299.99657 * 20 19 17 35 35 H 1.08997 * 109.47432 * 59.99888 * 20 19 17 36 36 H 1.09007 * 109.47439 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5858 2.0968 -1.2096 5 6 2.2654 1.4996 -2.4148 6 1 3.0116 0.7293 -2.2877 7 6 1.9346 1.9367 -3.6800 8 7 1.0256 2.8744 -3.8349 9 14 2.7765 1.1960 -5.1740 10 1 2.5113 -0.2645 -5.2182 11 1 2.2469 1.8323 -6.4068 12 1 4.2400 1.4308 -5.0846 13 6 1.5896 2.0955 1.2117 14 6 2.2533 1.4807 2.4168 15 6 3.4389 1.8429 2.9589 16 6 3.5976 0.9551 4.0596 17 6 4.7353 0.9072 5.0089 18 8 5.6636 1.6794 4.8832 19 8 4.7390 0.0074 6.0105 20 6 5.8849 0.0182 6.9021 21 7 2.5326 0.1923 4.0680 22 8 1.7808 0.4732 3.1637 23 1 -0.3633 -1.0277 -0.0064 24 1 -0.3633 0.5083 0.8931 25 1 -0.3632 0.5193 -0.8868 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 0.5053 2.0034 -1.3183 29 1 1.8528 3.1504 -1.1267 30 1 0.7925 3.1817 -4.7250 31 1 0.5072 2.0175 1.3137 32 1 1.8727 3.1454 1.1371 33 1 4.1101 2.6230 2.6310 34 1 6.7921 -0.1766 6.3301 35 1 5.9613 0.9929 7.3838 36 1 5.7617 -0.7541 7.6615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602438485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -30.655706 kcal Electronic energy + Delta-G solvation = -20215.918934 eV Core-core repulsion = 16896.626917 eV Total energy + Delta-G solvation = -3319.292016 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.27210 -41.54496 -39.06794 -37.79724 -35.30196 -34.83496 -33.54268 -31.05069 -29.30944 -29.13050 -26.63969 -25.87303 -24.99563 -23.90754 -21.98470 -21.09988 -19.04958 -18.65479 -18.58032 -18.13038 -17.62251 -17.50715 -16.87263 -16.55819 -15.89938 -15.44502 -14.76417 -14.72541 -14.50500 -14.47657 -14.04814 -13.59152 -13.22162 -13.12038 -13.04299 -12.73753 -12.63044 -12.44749 -12.39403 -12.16733 -11.98481 -11.88368 -11.75960 -11.50699 -11.31955 -10.64395 -10.51851 -8.98871 -8.14719 -6.22196 -0.28872 0.47669 1.21170 1.45512 1.46546 1.54263 1.61897 1.83257 2.44857 2.76627 3.19151 3.37561 3.45892 3.78822 4.00528 4.15639 4.20592 4.27326 4.27952 4.40882 4.55974 4.63174 4.65807 4.71455 4.82211 4.97068 4.98127 5.07688 5.27174 5.41113 5.55656 5.71409 6.10230 6.27939 6.30825 6.59501 6.83648 6.92732 7.46413 8.95084 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.003882 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.520453 B = 7211.487347 C = 7609.072757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 N -0.540 5.540 4 C 0.204 3.796 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.125 3.875 14 C 0.004 3.996 15 C -0.167 4.167 16 C -0.030 4.030 17 C 0.557 3.443 18 O -0.505 6.505 19 O -0.352 6.352 20 C 0.027 3.973 21 N -0.322 5.322 22 O 0.132 5.868 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.066 0.934 28 H -0.006 1.006 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.119 0.881 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -4.410 17.662 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.069 4.069 3 N -0.265 5.265 4 C 0.078 3.922 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.198 1.198 13 C -0.004 4.004 14 C -0.059 4.059 15 C -0.190 4.190 16 C -0.186 4.186 17 C 0.400 3.600 18 O -0.391 6.391 19 O -0.267 6.267 20 C -0.065 4.065 21 N -0.021 5.021 22 O 0.052 5.948 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.012 0.988 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.213 0.787 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.831 -5.107 18.395 19.471 hybrid contribution 0.070 0.500 -1.297 1.392 sum 3.901 -4.607 17.098 18.132 Atomic orbital electron populations 1.22275 0.97532 1.02597 1.01483 1.21989 0.93652 0.89993 1.01260 1.62296 1.59874 1.02845 1.01488 1.19478 0.93850 0.92928 0.85895 1.21387 1.21887 1.21279 0.91227 0.92443 1.25718 0.95855 0.95609 1.01813 1.70038 1.33107 1.30315 1.23598 0.85610 0.78873 0.78711 0.78460 1.19584 1.21085 1.19751 1.20727 0.98245 0.97951 0.83454 1.24536 0.95197 0.90104 0.96042 1.22549 0.98174 1.03478 0.94809 1.22409 0.95930 1.00009 1.00220 1.19495 0.83360 0.78053 0.79106 1.90855 1.35354 1.40431 1.72504 1.86601 1.47824 1.53495 1.38797 1.23766 0.85474 1.05201 0.92094 1.74282 1.02185 1.19182 1.06431 1.84812 1.39414 1.41183 1.29402 0.91127 0.91639 0.93936 0.91901 0.91525 0.98818 0.96966 0.92795 0.90889 0.86294 0.78693 0.91194 0.90902 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.79 9.26 71.98 0.67 -5.13 16 2 C 0.06 2.10 5.71 86.30 0.49 2.60 16 3 N -0.54 -20.72 4.69 -905.34 -4.24 -24.96 16 4 C 0.20 9.71 4.53 85.56 0.39 10.10 16 5 C -0.52 -27.69 8.40 25.60 0.22 -27.48 16 6 H 0.06 3.07 7.38 -2.91 -0.02 3.04 16 7 C 0.01 0.46 5.46 84.66 0.46 0.92 16 8 N -0.93 -53.18 13.29 21.45 0.28 -52.90 16 9 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 C 0.12 3.70 5.32 85.56 0.45 4.16 16 14 C 0.00 0.12 6.03 25.01 0.15 0.27 16 15 C -0.17 -4.60 10.92 22.60 0.25 -4.35 16 16 C -0.03 -0.86 7.24 42.94 0.31 -0.55 16 17 C 0.56 15.45 7.99 70.48 0.56 16.01 16 18 O -0.50 -15.31 16.74 20.14 0.34 -14.98 16 19 O -0.35 -8.32 10.57 -55.55 -0.59 -8.90 16 20 C 0.03 0.39 10.56 113.37 1.20 1.58 16 21 N -0.32 -9.50 12.12 -49.53 -0.60 -10.10 16 22 O 0.13 3.73 10.55 71.88 0.76 4.49 16 23 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.84 6.34 -2.39 -0.02 1.82 16 25 H 0.04 1.62 6.28 -2.39 -0.02 1.60 16 26 H 0.06 2.52 6.99 -2.39 -0.02 2.50 16 27 H 0.07 2.15 6.73 -2.39 -0.02 2.13 16 28 H -0.01 -0.30 6.01 -2.39 -0.01 -0.31 16 29 H 0.01 0.62 7.91 -2.38 -0.02 0.60 16 30 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 31 H 0.07 2.00 6.07 -2.39 -0.01 1.98 16 32 H 0.12 3.26 7.92 -2.39 -0.02 3.25 16 33 H 0.20 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.14 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -62.76 310.75 4.22 -58.54 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.10 Total: 5.63 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.15 Total: -1.87 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -4.56 Total: -87.95 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.51 Total: -19.39 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.76 4.22 -58.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.884 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds