Wall clock time and date at job start Mon Mar 30 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47180 * 2 1 4 4 C 1.35353 * 117.00355 * 179.97438 * 3 2 1 5 5 N 1.30554 * 125.44795 * 179.97438 * 4 3 2 6 6 C 1.36328 * 108.38295 * 179.97438 * 5 4 3 7 7 C 1.47369 * 126.41020 * 180.02562 * 6 5 4 8 8 O 1.21621 * 119.99522 * 174.05615 * 7 6 5 9 9 N 1.34771 * 120.00481 * 354.04991 * 7 6 5 10 10 C 1.46490 * 120.00636 * 184.24986 * 9 7 6 11 11 C 1.53006 * 109.47151 * 94.91026 * 10 9 7 12 12 C 1.46503 * 119.99769 * 4.25183 * 9 7 6 13 13 C 1.50703 * 109.47372 * 83.52310 * 12 9 7 14 14 H 1.08002 * 119.99871 * 0.02562 * 13 12 9 15 15 C 1.37872 * 120.00111 * 180.02562 * 13 12 9 16 16 N 1.31509 * 120.00539 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99583 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46897 * 120.00079 * 17 15 13 20 20 H 1.48503 * 109.46754 * 239.99708 * 17 15 13 21 21 C 1.35919 * 107.17311 * 0.02562 * 6 5 4 22 22 O 1.34196 * 125.44453 * 359.69380 * 4 3 2 23 23 H 1.09005 * 109.47142 * 299.99508 * 1 2 3 24 24 H 1.08998 * 109.47349 * 60.00053 * 1 2 3 25 25 H 1.09008 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47053 * 240.00080 * 2 1 3 27 27 H 1.09004 * 109.47640 * 120.00276 * 2 1 3 28 28 H 1.08994 * 109.47874 * 214.91342 * 10 9 7 29 29 H 1.09009 * 109.47009 * 334.91726 * 10 9 7 30 30 H 1.08996 * 109.46677 * 60.00671 * 11 10 9 31 31 H 1.08999 * 109.46946 * 179.97438 * 11 10 9 32 32 H 1.08996 * 109.47488 * 300.00723 * 11 10 9 33 33 H 1.08994 * 109.47354 * 203.52306 * 12 9 7 34 34 H 1.09007 * 109.47315 * 323.52413 * 12 9 7 35 35 H 0.96993 * 120.00563 * 180.02562 * 16 15 13 36 36 H 1.08001 * 126.45282 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3482 1.5247 0.0005 5 7 3.9594 2.6783 0.0001 6 6 5.3038 2.4525 0.0015 7 6 6.3629 3.4772 0.0021 8 8 7.5283 3.1472 0.1124 9 7 6.0402 4.7801 -0.1196 10 6 7.0964 5.7909 -0.2127 11 6 7.3801 6.0980 -1.6845 12 6 4.6329 5.1855 -0.1589 13 6 4.1043 5.3022 1.2476 14 1 4.7519 5.0955 2.0868 15 6 2.7939 5.6729 1.4629 16 7 2.0053 5.9251 0.4412 17 14 2.1390 5.8182 3.2064 18 1 3.2183 5.4845 4.1701 19 1 1.6731 7.2078 3.4459 20 1 1.0046 4.8775 3.3890 21 6 5.4845 1.1054 0.0022 22 8 4.2630 0.5428 0.0069 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 6.7740 6.7011 0.2928 29 1 8.0029 5.4138 0.2610 30 1 6.4738 6.4751 -2.1581 31 1 8.1657 6.8505 -1.7537 32 1 7.7026 5.1879 -2.1900 33 1 4.5463 6.1492 -0.6607 34 1 4.0547 4.4389 -0.7035 35 1 1.0836 6.1862 0.5927 36 1 6.4308 0.5848 0.0029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612426483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:12 Heat of formation + Delta-G solvation = -31.977923 kcal Electronic energy + Delta-G solvation = -21120.699619 eV Core-core repulsion = 17801.350267 eV Total energy + Delta-G solvation = -3319.349352 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.87136 -38.98057 -38.45948 -35.19216 -34.34272 -32.48780 -31.82595 -30.33558 -28.91332 -26.81596 -24.35657 -23.43745 -22.89713 -22.12735 -21.27489 -19.34288 -17.68720 -17.11976 -16.61365 -16.08871 -15.94136 -15.37231 -15.30623 -14.60826 -14.23640 -14.17429 -13.42941 -13.00004 -12.82149 -12.76917 -12.62619 -12.27332 -11.89772 -11.70117 -11.53076 -11.45675 -11.12135 -10.78093 -10.75786 -10.42453 -10.34202 -10.01357 -9.60856 -9.39277 -9.17172 -8.23265 -8.17565 -7.56129 -5.88106 -3.88418 1.63597 2.37079 2.76603 3.18561 3.36110 3.43439 3.47909 3.89797 4.03966 4.55592 4.80925 4.83210 5.02982 5.11227 5.37004 5.40289 5.48426 5.65225 5.69086 5.75609 5.84629 5.93271 5.97317 6.04625 6.25063 6.30937 6.47991 6.68316 6.93589 7.12766 7.62193 7.85190 8.02748 8.19509 8.39535 8.41759 8.94623 9.13824 9.73068 11.20733 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.009060 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.019449 B = 3089.623221 C = 4699.498506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.239 6.239 4 C 0.355 3.645 5 N -0.381 5.381 6 C -0.024 4.024 7 C 0.596 3.404 8 O -0.574 6.574 9 N -0.575 5.575 10 C 0.111 3.889 11 C -0.163 4.163 12 C 0.225 3.775 13 C -0.508 4.508 14 H 0.051 0.949 15 C 0.072 3.928 16 N -0.887 5.887 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.031 4.031 22 O -0.238 6.238 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.258 0.742 36 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 -10.290 -3.197 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.147 6.147 4 C 0.110 3.890 5 N -0.125 5.125 6 C -0.144 4.144 7 C 0.383 3.617 8 O -0.457 6.457 9 N -0.303 5.303 10 C -0.012 4.012 11 C -0.221 4.221 12 C 0.106 3.894 13 C -0.547 4.547 14 H 0.069 0.931 15 C -0.130 4.130 16 N -0.527 5.527 17 Si 0.713 3.287 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.103 4.103 22 O -0.131 6.131 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 0.887 -9.689 -3.190 10.239 hybrid contribution -0.358 -0.714 1.113 1.370 sum 0.529 -10.402 -2.076 10.621 Atomic orbital electron populations 1.21781 0.91773 1.02956 1.04333 1.22900 0.96586 0.80494 1.02313 1.86470 1.09460 1.29269 1.89535 1.24031 0.83288 0.81807 0.99857 1.72206 1.03039 1.17963 1.19271 1.21781 0.91002 0.93326 1.08303 1.16737 0.85597 0.82283 0.77063 1.90701 1.18769 1.81900 1.54321 1.48219 1.10374 1.04385 1.67338 1.21332 0.91499 0.92108 0.96292 1.22113 1.01443 1.01161 0.97392 1.19984 0.73714 0.97199 0.98475 1.21247 0.96001 1.45653 0.91788 0.93116 1.24725 0.96524 0.95476 0.96256 1.69920 1.06361 1.46964 1.29418 0.86658 0.78946 0.77388 0.85667 1.20107 1.21211 1.21142 1.24670 0.85612 0.93138 1.06876 1.84298 1.16231 1.39986 1.72542 0.91012 0.90992 0.90011 0.91384 0.91393 0.90386 0.90651 0.92328 0.92275 0.92948 0.95405 0.90286 0.93211 0.75654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.05 0.64 6.38 37.16 0.24 0.88 16 3 O -0.24 -4.36 10.19 -40.98 -0.42 -4.78 16 4 C 0.36 7.05 8.98 52.22 0.47 7.52 16 5 N -0.38 -8.84 7.19 -11.71 -0.08 -8.93 16 6 C -0.02 -0.51 6.65 -82.98 -0.55 -1.07 16 7 C 0.60 13.43 7.60 -12.55 -0.10 13.33 16 8 O -0.57 -13.08 16.38 5.26 0.09 -12.99 16 9 N -0.58 -13.04 2.47 -176.35 -0.44 -13.48 16 10 C 0.11 2.11 6.18 -4.04 -0.03 2.09 16 11 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 12 C 0.23 5.80 4.79 -5.19 -0.02 5.77 16 13 C -0.51 -14.21 8.42 -34.44 -0.29 -14.50 16 14 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 15 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 17 Si 0.88 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 C -0.03 -0.52 11.94 29.90 0.36 -0.16 16 22 O -0.24 -4.01 10.20 -17.74 -0.18 -4.19 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 29 H 0.08 1.41 7.23 -51.92 -0.38 1.04 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.74 8.02 -51.93 -0.42 0.33 16 34 H 0.08 2.16 5.27 -51.92 -0.27 1.89 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.23 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -32.95 315.44 -4.66 -37.61 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.84 Total: -2.32 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 0.74 Total: 12.44 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.22 Total: -47.57 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.51 Total: -21.96 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.95 -4.66 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612426483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.633 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds