Wall clock time and date at job start Mon Mar 30 2020 00:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50702 * 109.47245 * 120.00099 * 2 1 3 5 5 N 1.28024 * 120.00186 * 240.00438 * 4 2 1 6 6 N 1.40097 * 120.00213 * 179.72524 * 5 4 2 7 7 C 1.39865 * 120.00172 * 179.97438 * 6 5 4 8 8 C 1.38864 * 120.05886 * 359.72381 * 7 6 5 9 9 C 1.38142 * 119.97069 * 179.71917 * 8 7 6 10 10 C 1.38480 * 120.08766 * 0.55880 * 9 8 7 11 11 F 1.35103 * 119.93986 * 179.74653 * 10 9 8 12 12 C 1.38477 * 120.12218 * 359.71378 * 10 9 8 13 13 C 1.38270 * 120.03334 * 0.02562 * 12 10 9 14 14 F 1.35095 * 120.05062 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47253 * 239.99911 * 2 1 3 16 16 C 1.50707 * 109.46936 * 64.99884 * 15 2 1 17 17 H 1.07993 * 119.99790 * 0.02562 * 16 15 2 18 18 C 1.37877 * 119.99855 * 179.97438 * 16 15 2 19 19 N 1.31511 * 119.99865 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46927 * 89.99953 * 20 18 16 22 22 H 1.48500 * 109.46908 * 210.00161 * 20 18 16 23 23 H 1.48499 * 109.47151 * 329.99999 * 20 18 16 24 24 H 1.09004 * 109.47131 * 300.00012 * 1 2 3 25 25 H 1.08994 * 109.47175 * 60.00029 * 1 2 3 26 26 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99933 * 59.72385 * 4 2 1 28 28 H 0.97005 * 120.00024 * 359.97438 * 6 5 4 29 29 H 1.08003 * 120.01884 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.95708 * 180.27241 * 9 8 7 31 31 H 1.07999 * 119.98235 * 180.02562 * 12 10 9 32 32 H 1.08996 * 109.47205 * 185.00144 * 15 2 1 33 33 H 1.09004 * 109.47559 * 305.00028 * 15 2 1 34 34 H 0.97006 * 120.00282 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7683 -0.0883 2.0732 6 7 3.2306 -0.7470 3.2200 7 6 4.0351 -0.0675 4.1405 8 6 4.3811 1.2585 3.9160 9 6 5.1710 1.9297 4.8292 10 6 5.6279 1.2785 5.9627 11 9 6.4045 1.9363 6.8513 12 6 5.2898 -0.0454 6.1875 13 6 4.4951 -0.7204 5.2794 14 9 4.1655 -2.0122 5.4981 15 6 2.0400 -0.7212 -1.2492 16 6 1.6413 0.0571 -2.4766 17 1 1.0806 0.9745 -2.3756 18 6 1.9932 -0.4017 -3.7282 19 7 1.6457 0.2778 -4.7993 20 14 2.9637 -1.9883 -3.9028 21 1 2.0244 -3.1326 -4.0201 22 1 3.8127 -1.9180 -5.1191 23 1 3.8253 -2.1756 -2.7079 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7678 -1.7432 1.4036 28 1 2.9927 -1.6745 3.3757 29 1 4.0295 1.7661 3.0299 30 1 5.4363 2.9622 4.6566 31 1 5.6471 -0.5509 7.0725 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2952 34 1 1.8930 -0.0451 -5.6800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765993302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:07 Heat of formation + Delta-G solvation = -50.879658 kcal Electronic energy + Delta-G solvation = -18984.395326 eV Core-core repulsion = 15553.138817 eV Total energy + Delta-G solvation = -3431.256508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.03610 -49.85775 -40.21524 -38.58636 -36.60099 -34.48267 -32.95248 -31.85127 -29.62294 -28.77221 -25.75993 -24.48575 -23.51785 -22.52892 -20.76751 -19.37142 -19.05603 -18.48664 -18.39605 -17.32263 -17.04046 -16.61555 -16.29018 -16.24322 -15.51766 -15.34989 -15.03633 -14.96922 -14.66553 -14.45592 -13.98608 -13.69628 -13.38762 -13.11308 -12.85947 -12.64399 -12.51015 -12.47124 -11.86871 -11.68274 -11.58928 -11.31415 -10.98759 -10.71034 -10.69230 -10.08058 -8.53257 -8.22649 -6.25109 -0.05904 0.00920 1.21941 1.38786 1.41725 1.48582 1.51598 2.40211 2.43014 2.87255 3.13192 3.32273 3.57015 3.75070 3.91395 3.97435 4.16595 4.38398 4.48008 4.53002 4.73403 4.85334 4.92051 4.97416 5.06561 5.11256 5.17497 5.32715 5.38659 5.50586 5.58142 5.68740 5.72103 6.07147 6.35120 6.82730 7.15768 7.38410 8.93608 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.027625 B = 0.003402 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.315792 B = 8228.894358 C = 8330.530063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.022 4.022 3 H 0.067 0.933 4 C 0.095 3.905 5 N -0.272 5.272 6 N -0.592 5.592 7 C 0.179 3.821 8 C -0.121 4.121 9 C -0.109 4.109 10 C 0.067 3.933 11 F -0.139 7.139 12 C -0.139 4.139 13 C 0.045 3.955 14 F -0.139 7.139 15 C -0.001 4.001 16 C -0.517 4.517 17 H 0.043 0.957 18 C 0.005 3.995 19 N -0.952 5.952 20 Si 0.943 3.057 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.251 1.251 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.128 0.872 28 H 0.396 0.604 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.013 0.987 33 H 0.030 0.970 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -2.574 22.372 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.043 4.043 3 H 0.085 0.915 4 C -0.119 4.119 5 N -0.075 5.075 6 N -0.313 5.313 7 C 0.077 3.923 8 C -0.143 4.143 9 C -0.128 4.128 10 C 0.046 3.954 11 F -0.118 7.118 12 C -0.159 4.159 13 C 0.021 3.979 14 F -0.118 7.118 15 C -0.039 4.039 16 C -0.555 4.555 17 H 0.061 0.939 18 C -0.191 4.191 19 N -0.593 5.593 20 Si 0.767 3.233 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.174 1.174 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.236 0.764 29 H 0.165 0.835 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.988 -1.706 22.461 23.308 hybrid contribution -0.036 -1.808 -0.543 1.888 sum 5.952 -3.515 21.918 22.982 Atomic orbital electron populations 1.21614 0.92824 1.02466 1.01361 1.19855 0.96719 0.98803 0.88938 0.91456 1.26245 0.93043 0.98918 0.93689 1.73934 1.11927 1.26119 0.95495 1.45412 1.53404 1.12964 1.19508 1.17773 0.93218 0.93154 0.88163 1.20629 1.00368 0.91919 1.01390 1.21271 0.97307 1.02116 0.92139 1.17184 0.97333 0.90633 0.90251 1.91500 1.72651 1.80633 1.67009 1.20917 0.99863 0.93982 1.01158 1.16750 1.04959 0.79924 0.96269 1.91466 1.91467 1.34080 1.94750 1.19525 0.95984 0.96233 0.92168 1.21387 1.34421 1.08895 0.90776 0.93869 1.25905 0.96901 1.00672 0.95633 1.70056 1.48998 1.41517 0.98724 0.85773 0.79432 0.80071 0.78036 1.18923 1.21679 1.17426 0.92061 0.93073 0.91653 0.85455 0.76445 0.83469 0.81791 0.81424 0.96857 0.95144 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.99 71.98 0.65 -3.27 16 2 C -0.02 -0.77 2.75 -11.54 -0.03 -0.80 16 3 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 4 C 0.10 2.73 9.66 88.66 0.86 3.59 16 5 N -0.27 -7.96 10.23 -50.45 -0.52 -8.48 16 6 N -0.59 -15.06 6.45 -51.15 -0.33 -15.39 16 7 C 0.18 4.31 6.73 38.22 0.26 4.56 16 8 C -0.12 -2.73 9.51 22.40 0.21 -2.52 16 9 C -0.11 -2.02 10.02 22.30 0.22 -1.80 16 10 C 0.07 1.27 7.30 22.38 0.16 1.43 16 11 F -0.14 -2.71 17.26 44.97 0.78 -1.93 16 12 C -0.14 -2.55 10.00 22.33 0.22 -2.33 16 13 C 0.05 0.97 7.31 22.49 0.16 1.14 16 14 F -0.14 -3.02 16.64 44.97 0.75 -2.27 16 15 C 0.00 -0.02 3.50 29.85 0.10 0.08 16 16 C -0.52 -27.86 8.96 25.60 0.23 -27.63 16 17 H 0.04 2.55 7.30 -2.91 -0.02 2.53 16 18 C 0.01 0.30 5.47 84.66 0.46 0.77 16 19 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 20 Si 0.94 42.75 27.47 68.60 1.88 44.64 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 24 H 0.06 1.63 8.14 -2.38 -0.02 1.62 16 25 H 0.05 1.89 6.95 -2.39 -0.02 1.87 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.13 2.95 8.00 -2.91 -0.02 2.93 16 28 H 0.40 8.72 8.12 -213.32 -1.73 6.99 16 29 H 0.15 3.56 7.36 -2.91 -0.02 3.53 16 30 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 33 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 34 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -62.43 304.26 5.71 -56.72 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.66 Total: 11.34 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.51 Total: -26.77 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -0.55 Total: -81.72 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 1.52 Total: -4.20 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Total: -62.43 5.71 -56.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.837 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds