Wall clock time and date at job start Mon Mar 30 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46788 * 2 1 4 4 C 1.50702 * 109.47181 * 240.00187 * 2 1 3 5 5 N 1.28024 * 119.99739 * 120.00210 * 4 2 1 6 6 N 1.40100 * 119.99535 * 179.97438 * 5 4 2 7 7 C 1.39865 * 119.99943 * 179.97438 * 6 5 4 8 8 C 1.38864 * 120.05886 * 359.44989 * 7 6 5 9 9 C 1.38143 * 119.97041 * 179.70003 * 8 7 6 10 10 C 1.38480 * 120.08779 * 0.57319 * 9 8 7 11 11 F 1.35093 * 119.94003 * 179.74209 * 10 9 8 12 12 C 1.38477 * 120.12194 * 359.72810 * 10 9 8 13 13 C 1.38280 * 120.03362 * 359.97214 * 12 10 9 14 14 F 1.35089 * 120.04701 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47220 * 119.99941 * 2 1 3 16 16 C 1.50707 * 109.47086 * 295.00466 * 15 2 1 17 17 H 1.07993 * 120.00010 * 359.97438 * 16 15 2 18 18 C 1.37870 * 119.99807 * 180.02562 * 16 15 2 19 19 N 1.31517 * 120.00462 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47083 * 60.00239 * 20 18 16 22 22 H 1.48501 * 109.47240 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47416 * 299.99954 * 20 18 16 24 24 H 1.09003 * 109.47498 * 60.00308 * 1 2 3 25 25 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47547 * 299.99389 * 1 2 3 27 27 H 1.07995 * 119.99521 * 299.99716 * 4 2 1 28 28 H 0.97005 * 120.00195 * 359.72022 * 6 5 4 29 29 H 1.08004 * 120.01885 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.95720 * 180.29691 * 9 8 7 31 31 H 1.07999 * 119.98211 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46853 * 55.00007 * 15 2 1 33 33 H 1.09003 * 109.47209 * 175.00564 * 15 2 1 34 34 H 0.96995 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7684 -0.0881 -2.0731 6 7 3.2358 -0.7487 -3.2168 7 6 4.0395 -0.0689 -4.1377 8 6 4.3655 1.2642 -3.9254 9 6 5.1645 1.9322 -4.8330 10 6 5.6313 1.2776 -5.9605 11 9 6.4082 1.9352 -6.8488 12 6 5.3034 -0.0499 -6.1791 13 6 4.5090 -0.7252 -5.2708 14 9 4.1894 -2.0204 -5.4834 15 6 2.0400 -0.7212 1.2492 16 6 1.6412 0.0571 2.4766 17 1 1.0805 0.9745 2.3757 18 6 1.9931 -0.4017 3.7282 19 7 2.6764 -1.5187 3.8512 20 14 1.4995 0.5634 5.2496 21 1 0.0195 0.6698 5.3096 22 1 1.9944 -0.1367 6.4621 23 1 2.0915 1.9238 5.1866 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.7714 -1.7443 -1.4013 28 1 3.0051 -1.6787 -3.3681 29 1 3.9981 1.7773 -3.0490 30 1 5.4218 2.9676 -4.6653 31 1 5.6691 -0.5583 -7.0590 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7994 1.2056 34 1 2.9237 -1.8416 4.7317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765993333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:09 Heat of formation + Delta-G solvation = -39.158774 kcal Electronic energy + Delta-G solvation = -18926.518612 eV Core-core repulsion = 15495.770359 eV Total energy + Delta-G solvation = -3430.748253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.07054 -48.95556 -39.21533 -37.28634 -35.11053 -32.73912 -31.43167 -30.93430 -27.95479 -26.99389 -24.38338 -23.41284 -22.46850 -21.33522 -19.37002 -18.28667 -17.74428 -17.32641 -16.50437 -16.09469 -16.04115 -15.65615 -15.36572 -14.61214 -14.56108 -14.17049 -13.66974 -13.43977 -13.22887 -13.03485 -12.57237 -12.42337 -11.92050 -11.62021 -11.57839 -11.21051 -10.95354 -10.83748 -10.49726 -10.17672 -9.90225 -9.81832 -9.28439 -9.16623 -9.15273 -8.41652 -7.45435 -6.06378 -4.09040 0.87067 0.96994 2.47043 2.61964 3.30313 3.35435 3.37202 3.38738 3.81370 4.25587 4.40945 4.48156 4.69471 4.93826 5.16317 5.19767 5.30059 5.62189 5.66588 5.76416 5.89049 5.97078 6.03905 6.06219 6.25794 6.42833 6.54008 6.76097 6.88780 6.91735 7.11326 7.55288 7.65201 7.91060 8.29683 8.35832 8.96134 9.55183 11.04939 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.003207 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.686812 B = 8728.308693 C = 9056.377652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 H 0.079 0.921 4 C 0.106 3.894 5 N -0.268 5.268 6 N -0.593 5.593 7 C 0.200 3.800 8 C -0.113 4.113 9 C -0.117 4.117 10 C 0.066 3.934 11 F -0.140 7.140 12 C -0.145 4.145 13 C 0.046 3.954 14 F -0.137 7.137 15 C 0.034 3.966 16 C -0.518 4.518 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.388 0.612 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 2.884 -17.639 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 H 0.097 0.903 4 C -0.108 4.108 5 N -0.070 5.070 6 N -0.311 5.311 7 C 0.097 3.903 8 C -0.135 4.135 9 C -0.136 4.136 10 C 0.045 3.955 11 F -0.119 7.119 12 C -0.166 4.166 13 C 0.022 3.978 14 F -0.116 7.116 15 C -0.005 4.005 16 C -0.556 4.556 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.118 0.882 28 H 0.227 0.773 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.668 3.626 -17.754 18.316 hybrid contribution -0.453 -1.116 0.633 1.360 sum 2.215 2.510 -17.120 17.445 Atomic orbital electron populations 1.21678 0.94334 1.01505 1.01139 1.20368 0.95493 0.99942 0.90173 0.90281 1.26610 0.92034 0.98001 0.94176 1.74083 1.12704 1.25095 0.95141 1.45538 1.53080 1.12285 1.20192 1.17558 0.92461 0.92566 0.87761 1.20609 0.99787 0.91891 1.01191 1.21071 0.98343 1.01224 0.93005 1.17087 0.97642 0.90448 0.90358 1.91485 1.72704 1.80649 1.67034 1.20704 1.00897 0.94027 1.00926 1.16710 1.04858 0.79750 0.96500 1.91467 1.91642 1.33671 1.94831 1.19125 0.96487 0.95595 0.89260 1.21115 1.35362 1.08519 0.90639 0.92260 1.25005 0.95109 0.95057 0.99173 1.69946 1.38587 1.21131 1.23750 0.86646 0.78906 0.80121 0.82272 1.20183 1.21356 1.20177 0.94594 0.93135 0.90706 0.88160 0.77345 0.82725 0.83955 0.83589 0.96095 0.96342 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.98 37.16 0.33 -1.79 16 2 C -0.04 -0.72 2.75 -91.77 -0.25 -0.97 16 3 H 0.08 1.52 8.11 -51.93 -0.42 1.09 16 4 C 0.11 1.73 9.66 -13.86 -0.13 1.60 16 5 N -0.27 -4.34 10.23 32.67 0.33 -4.01 16 6 N -0.59 -8.52 6.45 32.48 0.21 -8.31 16 7 C 0.20 2.69 6.73 -83.64 -0.56 2.13 16 8 C -0.11 -1.41 9.51 -39.38 -0.37 -1.78 16 9 C -0.12 -1.25 10.02 -39.53 -0.40 -1.65 16 10 C 0.07 0.73 7.30 -39.40 -0.29 0.44 16 11 F -0.14 -1.58 17.26 2.25 0.04 -1.55 16 12 C -0.15 -1.58 10.00 -39.48 -0.39 -1.98 16 13 C 0.05 0.57 7.31 -39.24 -0.29 0.28 16 14 F -0.14 -1.72 16.64 2.25 0.04 -1.68 16 15 C 0.03 0.79 4.43 -27.88 -0.12 0.67 16 16 C -0.52 -13.58 8.41 -34.44 -0.29 -13.87 16 17 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 27 H 0.10 1.46 8.00 -52.49 -0.42 1.04 16 28 H 0.39 5.02 8.12 -182.59 -1.48 3.54 16 29 H 0.16 2.00 7.36 -52.48 -0.39 1.61 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -28.34 307.86 -7.00 -35.34 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.11 Total: 0.36 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.87 Total: -15.42 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 1.28 Total: -37.46 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.34 -7.00 -35.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.815 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds