Wall clock time and date at job start Mon Mar 30 2020 00:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46788 * 2 1 4 4 C 1.50702 * 109.47181 * 240.00187 * 2 1 3 5 5 N 1.28024 * 119.99739 * 120.00210 * 4 2 1 6 6 N 1.40100 * 119.99535 * 179.97438 * 5 4 2 7 7 C 1.39865 * 119.99943 * 179.97438 * 6 5 4 8 8 C 1.38864 * 120.05886 * 359.44989 * 7 6 5 9 9 C 1.38143 * 119.97041 * 179.70003 * 8 7 6 10 10 C 1.38480 * 120.08779 * 0.57319 * 9 8 7 11 11 F 1.35093 * 119.94003 * 179.74209 * 10 9 8 12 12 C 1.38477 * 120.12194 * 359.72810 * 10 9 8 13 13 C 1.38280 * 120.03362 * 359.97214 * 12 10 9 14 14 F 1.35089 * 120.04701 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47220 * 119.99941 * 2 1 3 16 16 C 1.50707 * 109.47086 * 295.00466 * 15 2 1 17 17 H 1.07993 * 120.00010 * 359.97438 * 16 15 2 18 18 C 1.37870 * 119.99807 * 180.02562 * 16 15 2 19 19 N 1.31517 * 120.00462 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47083 * 60.00239 * 20 18 16 22 22 H 1.48501 * 109.47240 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47416 * 299.99954 * 20 18 16 24 24 H 1.09003 * 109.47498 * 60.00308 * 1 2 3 25 25 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47547 * 299.99389 * 1 2 3 27 27 H 1.07995 * 119.99521 * 299.99716 * 4 2 1 28 28 H 0.97005 * 120.00195 * 359.72022 * 6 5 4 29 29 H 1.08004 * 120.01885 * 359.97438 * 8 7 6 30 30 H 1.07998 * 119.95720 * 180.29691 * 9 8 7 31 31 H 1.07999 * 119.98211 * 180.02562 * 12 10 9 32 32 H 1.09001 * 109.46853 * 55.00007 * 15 2 1 33 33 H 1.09003 * 109.47209 * 175.00564 * 15 2 1 34 34 H 0.96995 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7684 -0.0881 -2.0731 6 7 3.2358 -0.7487 -3.2168 7 6 4.0395 -0.0689 -4.1377 8 6 4.3655 1.2642 -3.9254 9 6 5.1645 1.9322 -4.8330 10 6 5.6313 1.2776 -5.9605 11 9 6.4082 1.9352 -6.8488 12 6 5.3034 -0.0499 -6.1791 13 6 4.5090 -0.7252 -5.2708 14 9 4.1894 -2.0204 -5.4834 15 6 2.0400 -0.7212 1.2492 16 6 1.6412 0.0571 2.4766 17 1 1.0805 0.9745 2.3757 18 6 1.9931 -0.4017 3.7282 19 7 2.6764 -1.5187 3.8512 20 14 1.4995 0.5634 5.2496 21 1 0.0195 0.6698 5.3096 22 1 1.9944 -0.1367 6.4621 23 1 2.0915 1.9238 5.1866 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.7714 -1.7443 -1.4013 28 1 3.0051 -1.6787 -3.3681 29 1 3.9981 1.7773 -3.0490 30 1 5.4218 2.9676 -4.6653 31 1 5.6691 -0.5583 -7.0590 32 1 1.6053 -1.7198 1.2951 33 1 3.1263 -0.7994 1.2056 34 1 2.9237 -1.8416 4.7317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765993333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:09 Heat of formation + Delta-G solvation = -53.609058 kcal Electronic energy + Delta-G solvation = -18927.145223 eV Core-core repulsion = 15495.770359 eV Total energy + Delta-G solvation = -3431.374864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.03641 -49.85522 -40.20942 -38.55095 -36.56686 -34.48427 -32.83687 -31.84845 -29.22082 -28.61329 -25.91378 -24.58911 -23.61193 -22.63979 -20.76105 -19.29807 -18.93353 -18.42192 -18.18628 -17.28552 -17.03935 -16.62679 -16.45575 -16.28530 -15.50864 -15.24613 -14.90403 -14.81927 -14.78659 -14.21823 -13.98802 -13.56207 -13.36295 -13.00934 -12.76429 -12.64661 -12.49460 -12.44480 -12.23332 -11.77458 -11.38849 -11.29223 -10.96833 -10.65340 -10.49301 -10.07720 -8.52818 -8.14254 -6.23320 -0.05499 0.01341 1.22191 1.45719 1.47761 1.50289 1.55404 2.43288 2.46545 2.87664 3.20460 3.32585 3.57427 3.77008 3.92674 3.98112 4.18077 4.42896 4.51614 4.60413 4.73752 4.86544 4.93590 4.99992 5.10903 5.16914 5.25457 5.39467 5.49653 5.55389 5.61042 5.78259 5.88776 6.07572 6.28507 6.91974 7.15048 7.45278 8.97323 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.030273 B = 0.003207 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.686812 B = 8728.308693 C = 9056.377652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.027 4.027 3 H 0.071 0.929 4 C 0.097 3.903 5 N -0.271 5.271 6 N -0.594 5.594 7 C 0.179 3.821 8 C -0.121 4.121 9 C -0.108 4.108 10 C 0.067 3.933 11 F -0.139 7.139 12 C -0.139 4.139 13 C 0.043 3.957 14 F -0.140 7.140 15 C 0.040 3.960 16 C -0.528 4.528 17 H 0.069 0.931 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.959 3.041 21 H -0.264 1.264 22 H -0.289 1.289 23 H -0.269 1.269 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.394 0.606 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.003 0.997 33 H -0.015 1.015 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 3.991 -18.817 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.048 4.048 3 H 0.090 0.910 4 C -0.118 4.118 5 N -0.074 5.074 6 N -0.314 5.314 7 C 0.076 3.924 8 C -0.143 4.143 9 C -0.127 4.127 10 C 0.046 3.954 11 F -0.117 7.117 12 C -0.159 4.159 13 C 0.019 3.981 14 F -0.119 7.119 15 C 0.001 3.999 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.215 1.215 23 H -0.194 1.194 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.234 0.766 29 H 0.166 0.834 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.022 0.978 33 H 0.003 0.997 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.418 4.751 -18.960 19.695 hybrid contribution -0.277 -1.428 0.852 1.686 sum 2.141 3.323 -18.108 18.534 Atomic orbital electron populations 1.21604 0.92541 1.02104 1.01760 1.20045 0.96934 0.98824 0.89027 0.91041 1.26292 0.92995 0.98643 0.93839 1.73928 1.11818 1.26040 0.95623 1.45455 1.53500 1.12658 1.19817 1.17811 0.93210 0.93176 0.88189 1.20631 1.00450 0.91729 1.01511 1.21271 0.97064 1.02191 0.92170 1.17168 0.97351 0.90550 0.90329 1.91497 1.72636 1.80622 1.66976 1.20916 0.99855 0.93978 1.01117 1.16775 1.05123 0.79736 0.96452 1.91463 1.91724 1.33836 1.94827 1.18962 0.94289 0.95160 0.91467 1.21588 1.34621 1.08784 0.91604 0.91336 1.25900 0.95231 0.96009 1.02589 1.70086 1.40228 1.22981 1.24344 0.85586 0.79088 0.78712 0.78194 1.18901 1.21530 1.19400 0.91923 0.92583 0.92021 0.86468 0.76632 0.83438 0.81626 0.81404 0.97831 0.99663 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.89 8.98 71.98 0.65 -3.25 16 2 C -0.03 -1.01 2.75 -11.54 -0.03 -1.04 16 3 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 4 C 0.10 3.13 9.66 88.66 0.86 3.99 16 5 N -0.27 -8.68 10.23 -50.46 -0.52 -9.20 16 6 N -0.59 -16.69 6.45 -51.16 -0.33 -17.02 16 7 C 0.18 4.62 6.73 38.22 0.26 4.88 16 8 C -0.12 -2.89 9.51 22.40 0.21 -2.67 16 9 C -0.11 -2.09 10.02 22.30 0.22 -1.86 16 10 C 0.07 1.33 7.30 22.38 0.16 1.49 16 11 F -0.14 -2.78 17.26 44.97 0.78 -2.00 16 12 C -0.14 -2.71 10.00 22.34 0.22 -2.48 16 13 C 0.04 1.01 7.31 22.49 0.16 1.17 16 14 F -0.14 -3.31 16.64 44.97 0.75 -2.56 16 15 C 0.04 1.92 4.43 29.85 0.13 2.06 16 16 C -0.53 -27.94 8.41 25.60 0.22 -27.72 16 17 H 0.07 3.42 7.06 -2.91 -0.02 3.40 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.94 -55.31 13.29 21.45 0.28 -55.02 16 20 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.12 6.95 -2.39 -0.02 2.10 16 27 H 0.12 3.35 8.00 -2.91 -0.02 3.33 16 28 H 0.39 9.95 8.12 -213.31 -1.73 8.22 16 29 H 0.15 3.72 7.36 -2.91 -0.02 3.70 16 30 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 33 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -60.62 307.86 5.91 -54.71 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -0.61 Total: 11.38 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 3.53 Total: -24.97 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -0.56 Total: -81.24 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.52 Total: -4.56 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -60.62 5.91 -54.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.102 kcal (2) G-P(sol) polarization free energy of solvation -60.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds