Wall clock time and date at job start Mon Mar 30 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47021 * 299.99911 * 3 2 1 6 6 H 1.48500 * 109.47181 * 60.00084 * 3 2 1 7 7 C 1.37885 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47040 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47378 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99578 * 359.97438 * 13 12 11 15 15 O 1.34220 * 120.00451 * 179.97438 * 13 12 11 16 16 C 1.45196 * 117.00450 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47441 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.47233 * 179.97438 * 17 16 15 19 19 C 1.34597 * 126.43779 * 124.99743 * 18 17 16 20 20 N 1.31072 * 106.67901 * 179.75730 * 19 18 17 21 21 N 1.28843 * 107.99150 * 0.24588 * 20 19 18 22 22 N 1.28736 * 109.39426 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99714 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46671 * 59.99872 * 9 7 2 25 25 H 1.08999 * 109.47175 * 300.00240 * 9 7 2 26 26 H 1.09000 * 109.47389 * 60.00439 * 10 9 7 27 27 H 1.08999 * 109.47436 * 300.00207 * 10 9 7 28 28 H 1.08996 * 109.47505 * 60.00299 * 11 10 9 29 29 H 1.09000 * 109.47074 * 299.99687 * 11 10 9 30 30 H 1.09000 * 109.47788 * 59.99954 * 12 11 10 31 31 H 1.09009 * 109.47015 * 299.99767 * 12 11 10 32 32 H 1.08993 * 109.47005 * 59.99577 * 16 15 13 33 33 H 1.09001 * 109.46913 * 300.00061 * 16 15 13 34 34 H 1.09001 * 109.47575 * 59.99866 * 17 16 15 35 35 H 1.09001 * 109.47183 * 299.99976 * 17 16 15 36 36 H 1.08002 * 126.66399 * 0.02758 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4745 -6.1500 -0.0031 13 6 1.7210 -7.4552 -0.0044 14 8 0.5127 -7.4552 -0.0043 15 8 2.3921 -8.6176 -0.0056 16 6 1.6013 -9.8354 -0.0062 17 6 2.5333 -11.0487 -0.0083 18 7 1.7354 -12.2774 -0.0083 19 6 1.8198 -13.2854 -0.8962 20 7 0.9389 -14.1842 -0.5298 21 7 0.3409 -13.7485 0.5250 22 7 0.8179 -12.5953 0.8412 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8726 -3.6048 0.8877 27 1 2.8713 -3.6040 -0.8922 28 1 0.8532 -5.0443 -0.8922 29 1 0.8540 -5.0455 0.8878 30 1 3.1012 -6.0928 0.8868 31 1 3.1011 -6.0918 -0.8932 32 1 0.9721 -9.8595 -0.8958 33 1 0.9729 -9.8609 0.8840 34 1 3.1630 -11.0248 0.8811 35 1 3.1614 -11.0229 -0.8988 36 1 2.4871 -13.3444 -1.7434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884508350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:43 Heat of formation + Delta-G solvation = 12.622996 kcal Electronic energy + Delta-G solvation = -18854.968600 eV Core-core repulsion = 15569.846040 eV Total energy + Delta-G solvation = -3285.122560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.67015 -40.75210 -37.47447 -36.16602 -35.09562 -32.97434 -32.76507 -31.23401 -29.89223 -26.37242 -25.25007 -24.31970 -23.04624 -22.45974 -20.83820 -20.13196 -18.43025 -17.78625 -17.41615 -17.10909 -16.43955 -16.28575 -16.20276 -15.45121 -14.50194 -14.47151 -14.07872 -13.55249 -13.00801 -12.90806 -12.69383 -12.50363 -12.27013 -11.85094 -11.74205 -11.65290 -11.47108 -11.09556 -11.05611 -10.85241 -10.69630 -10.68533 -10.55488 -10.49086 -9.72825 -9.35931 -9.06575 -8.36603 -6.01050 -4.03845 0.70511 1.20236 1.78722 2.05209 2.44255 3.29497 3.37007 3.40511 3.53659 3.72959 3.86137 4.19195 4.35402 4.44124 4.56920 4.71249 4.90910 4.97333 5.10629 5.12881 5.18141 5.34637 5.53526 5.59969 5.94812 6.02285 6.12676 6.36673 6.67381 6.85467 7.08776 7.54337 7.66997 7.80681 7.99259 8.10827 8.40708 9.03910 9.60301 11.10266 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.080108 B = 0.002192 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.444784 B =12772.527017 C =12988.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.110 4.110 12 C -0.109 4.109 13 C 0.463 3.537 14 O -0.496 6.496 15 O -0.358 6.358 16 C 0.052 3.948 17 C 0.119 3.881 18 N -0.309 5.309 19 C 0.166 3.834 20 N -0.306 5.306 21 N -0.071 5.071 22 N -0.089 5.089 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -23.793 -2.474 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.148 4.148 12 C -0.146 4.146 13 C 0.306 3.694 14 O -0.382 6.382 15 O -0.276 6.276 16 C -0.024 4.024 17 C -0.003 4.003 18 N -0.113 5.113 19 C -0.132 4.132 20 N -0.154 5.154 21 N -0.065 5.065 22 N -0.075 5.075 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 7.944 -24.216 -1.647 25.539 hybrid contribution 1.068 1.362 -0.610 1.835 sum 9.012 -22.854 -2.257 24.670 Atomic orbital electron populations 1.69978 1.06068 1.26499 1.50848 1.25053 0.94858 0.99321 0.95395 0.86542 0.80063 0.83831 0.77580 1.19751 1.21040 1.21027 1.21298 0.93040 0.91094 1.50509 0.92619 1.19104 0.94033 0.91255 0.97402 1.21649 0.99162 0.93445 1.00468 1.21611 0.97102 0.92677 1.03379 1.21654 0.99976 0.87237 1.05747 1.24353 0.87746 0.85302 0.72005 1.90722 1.15639 1.87434 1.44373 1.86429 1.41548 1.14482 1.85108 1.22975 0.93024 0.81393 1.05009 1.21941 0.92044 0.78318 1.08013 1.48575 1.26398 1.17408 1.18885 1.27847 1.01560 0.85276 0.98528 1.75053 1.07497 1.24521 1.08349 1.78709 1.18656 1.01698 1.07458 1.78972 1.01976 1.11821 1.14731 0.93038 0.96541 0.96516 0.93122 0.93149 0.91467 0.91427 0.87569 0.87621 0.90211 0.89168 0.86143 0.85359 0.74578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 10 C -0.11 -2.09 5.15 -26.73 -0.14 -2.22 16 11 C -0.11 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.11 -1.23 5.81 -27.88 -0.16 -1.39 16 13 C 0.46 5.57 7.96 36.01 0.29 5.85 16 14 O -0.50 -7.82 15.73 -18.75 -0.29 -8.12 16 15 O -0.36 -3.17 10.22 -39.23 -0.40 -3.57 16 16 C 0.05 0.37 5.60 37.16 0.21 0.58 16 17 C 0.12 0.41 6.86 -4.04 -0.03 0.38 16 18 N -0.31 -1.98 3.44 -62.55 -0.22 -2.20 16 19 C 0.17 0.89 12.79 -90.39 -1.16 -0.26 16 20 N -0.31 -3.05 12.36 29.59 0.37 -2.68 16 21 N -0.07 -0.85 13.43 60.35 0.81 -0.04 16 22 N -0.09 -0.92 13.07 60.35 0.79 -0.14 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.14 8.10 -51.93 -0.42 0.71 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.09 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.13 -0.01 8.08 -51.93 -0.42 -0.43 16 36 H 0.24 -0.08 8.06 -52.49 -0.42 -0.51 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -36.09 322.26 -5.06 -41.15 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -5.03 Total: -7.46 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -1.66 Total: -12.00 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 2.49 Total: -31.28 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.70 Total: -11.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.09 -5.06 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884508350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.773 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds