Wall clock time and date at job start Mon Mar 30 2020 01:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47021 * 299.99911 * 3 2 1 6 6 H 1.48500 * 109.47181 * 60.00084 * 3 2 1 7 7 C 1.37885 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47040 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46944 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47024 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47378 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99578 * 359.97438 * 13 12 11 15 15 O 1.34220 * 120.00451 * 179.97438 * 13 12 11 16 16 C 1.45196 * 117.00450 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47441 * 179.97438 * 16 15 13 18 18 N 1.46499 * 109.47233 * 179.97438 * 17 16 15 19 19 C 1.34597 * 126.43779 * 124.99743 * 18 17 16 20 20 N 1.31072 * 106.67901 * 179.75730 * 19 18 17 21 21 N 1.28843 * 107.99150 * 0.24588 * 20 19 18 22 22 N 1.28736 * 109.39426 * 359.97438 * 21 20 19 23 23 H 0.96997 * 119.99714 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46671 * 59.99872 * 9 7 2 25 25 H 1.08999 * 109.47175 * 300.00240 * 9 7 2 26 26 H 1.09000 * 109.47389 * 60.00439 * 10 9 7 27 27 H 1.08999 * 109.47436 * 300.00207 * 10 9 7 28 28 H 1.08996 * 109.47505 * 60.00299 * 11 10 9 29 29 H 1.09000 * 109.47074 * 299.99687 * 11 10 9 30 30 H 1.09000 * 109.47788 * 59.99954 * 12 11 10 31 31 H 1.09009 * 109.47015 * 299.99767 * 12 11 10 32 32 H 1.08993 * 109.47005 * 59.99577 * 16 15 13 33 33 H 1.09001 * 109.46913 * 300.00061 * 16 15 13 34 34 H 1.09001 * 109.47575 * 59.99866 * 17 16 15 35 35 H 1.09001 * 109.47183 * 299.99976 * 17 16 15 36 36 H 1.08002 * 126.66399 * 0.02758 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4745 -6.1500 -0.0031 13 6 1.7210 -7.4552 -0.0044 14 8 0.5127 -7.4552 -0.0043 15 8 2.3921 -8.6176 -0.0056 16 6 1.6013 -9.8354 -0.0062 17 6 2.5333 -11.0487 -0.0083 18 7 1.7354 -12.2774 -0.0083 19 6 1.8198 -13.2854 -0.8962 20 7 0.9389 -14.1842 -0.5298 21 7 0.3409 -13.7485 0.5250 22 7 0.8179 -12.5953 0.8412 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8726 -3.6048 0.8877 27 1 2.8713 -3.6040 -0.8922 28 1 0.8532 -5.0443 -0.8922 29 1 0.8540 -5.0455 0.8878 30 1 3.1012 -6.0928 0.8868 31 1 3.1011 -6.0918 -0.8932 32 1 0.9721 -9.8595 -0.8958 33 1 0.9729 -9.8609 0.8840 34 1 3.1630 -11.0248 0.8811 35 1 3.1614 -11.0229 -0.8988 36 1 2.4871 -13.3444 -1.7434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884508350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:43 Heat of formation + Delta-G solvation = -11.228118 kcal Electronic energy + Delta-G solvation = -18856.002862 eV Core-core repulsion = 15569.846040 eV Total energy + Delta-G solvation = -3286.156822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.25187 -41.65839 -38.28164 -36.85093 -36.60077 -34.66619 -33.56817 -32.08642 -31.23887 -27.83811 -26.17781 -24.90362 -24.42488 -23.14739 -22.10975 -21.50107 -19.09141 -18.45412 -18.34818 -18.11513 -17.91059 -17.20131 -16.82586 -16.46825 -16.39931 -15.44174 -14.85468 -14.57350 -14.34646 -13.93267 -13.69918 -13.54128 -13.41264 -13.29023 -12.93698 -12.84768 -12.32883 -12.26981 -12.19528 -12.19124 -12.10451 -11.74593 -11.68757 -11.42868 -11.37511 -11.28826 -11.04393 -10.55261 -8.18760 -6.30307 0.17390 0.74258 1.11693 1.18142 1.41532 1.41803 1.55263 1.73995 2.42225 3.12101 3.14591 3.46169 3.46304 3.68464 3.75391 3.98073 4.03643 4.10722 4.23349 4.36971 4.40400 4.59116 4.66219 4.70875 4.80474 4.86553 5.14642 5.15384 5.21365 5.33243 5.38923 5.57797 5.78818 5.89279 6.25706 6.63799 6.89083 7.39513 7.49411 8.93537 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.080108 B = 0.002192 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.444784 B =12772.527017 C =12988.124368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.968 3.032 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.016 3.984 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.099 4.099 13 C 0.469 3.531 14 O -0.544 6.544 15 O -0.339 6.339 16 C 0.048 3.952 17 C 0.124 3.876 18 N -0.306 5.306 19 C 0.192 3.808 20 N -0.347 5.347 21 N -0.111 5.111 22 N -0.118 5.118 23 H 0.262 0.738 24 H -0.014 1.014 25 H -0.015 1.015 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.178 0.822 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 -24.093 -3.447 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.021 4.021 10 C -0.133 4.133 11 C -0.142 4.142 12 C -0.136 4.136 13 C 0.314 3.686 14 O -0.433 6.433 15 O -0.255 6.255 16 C -0.027 4.027 17 C 0.004 3.996 18 N -0.110 5.110 19 C -0.105 4.105 20 N -0.195 5.195 21 N -0.105 5.105 22 N -0.105 5.105 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.196 0.804 36 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges 11.680 -24.536 -2.616 27.300 hybrid contribution -0.071 1.442 -0.348 1.485 sum 11.609 -23.094 -2.965 26.017 Atomic orbital electron populations 1.70132 1.08045 1.27638 1.52071 1.26090 0.95775 1.03749 0.94942 0.85350 0.79298 0.78531 0.77557 1.17953 1.20628 1.20684 1.21801 0.93831 0.92173 1.49872 0.91400 1.19079 0.94768 0.93816 0.94428 1.21433 0.97822 0.92210 1.01846 1.21381 0.97599 0.93513 1.01673 1.21522 0.98664 0.84781 1.08608 1.24437 0.87022 0.86408 0.70766 1.90726 1.17702 1.88137 1.46713 1.86392 1.40709 1.14128 1.84280 1.23082 0.93927 0.82112 1.03625 1.22244 0.90703 0.75274 1.11367 1.48769 1.25671 1.18271 1.18255 1.28857 1.00038 0.83316 0.98301 1.74953 1.09289 1.26596 1.08619 1.78679 1.20231 1.02665 1.08922 1.78894 1.03505 1.11761 1.16363 0.92923 0.99575 0.99676 0.91699 0.91545 0.93207 0.93420 0.84790 0.84485 0.90922 0.91567 0.84488 0.80430 0.68899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 0.85 4.97 29.85 0.15 1.00 16 10 C -0.10 -3.55 5.15 30.59 0.16 -3.39 16 11 C -0.10 -3.27 4.50 30.59 0.14 -3.13 16 12 C -0.10 -1.95 5.81 29.85 0.17 -1.78 16 13 C 0.47 10.53 7.96 71.24 0.57 11.10 16 14 O -0.54 -17.35 15.73 21.96 0.35 -17.00 16 15 O -0.34 -5.07 10.22 -51.32 -0.52 -5.60 16 16 C 0.05 0.62 5.60 71.98 0.40 1.02 16 17 C 0.12 0.41 6.86 86.38 0.59 1.00 16 18 N -0.31 -3.24 3.44 -351.82 -1.21 -4.45 16 19 C 0.19 1.49 12.79 180.27 2.31 3.80 16 20 N -0.35 -6.62 12.36 -60.29 -0.74 -7.37 16 21 N -0.11 -2.72 13.43 37.01 0.50 -2.22 16 22 N -0.12 -2.45 13.07 37.02 0.48 -1.97 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 25 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 29 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.18 -1.10 8.08 -2.39 -0.02 -1.12 16 36 H 0.30 -1.83 8.06 -2.91 -0.02 -1.85 16 Total: -1.00 -84.60 322.26 7.41 -77.19 By element: Atomic # 1 Polarization: -7.45 SS G_CDS: 1.07 Total: -6.38 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.18 Total: -20.36 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -0.69 Total: -73.70 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.18 Total: -22.60 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -84.60 7.41 -77.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884508350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.961 kcal (2) G-P(sol) polarization free energy of solvation -84.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds