Wall clock time and date at job start Mon Mar 30 2020 01:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99758 * 2 1 4 4 H 1.48499 * 109.46928 * 274.98198 * 3 2 1 5 5 H 1.48502 * 109.47111 * 34.98465 * 3 2 1 6 6 H 1.48503 * 109.46835 * 154.98664 * 3 2 1 7 7 C 1.38818 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99943 * 185.07512 * 7 2 1 9 9 N 1.36935 * 119.99541 * 5.07967 * 7 2 1 10 10 C 1.47581 * 134.48915 * 173.50525 * 9 7 2 11 11 C 1.53945 * 86.24124 * 155.42637 * 10 9 7 12 12 C 1.52998 * 113.74228 * 269.10432 * 11 10 9 13 13 N 1.46496 * 109.47199 * 185.00107 * 12 11 10 14 14 C 1.34779 * 120.00260 * 180.02562 * 13 12 11 15 15 O 1.21277 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99993 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.49233 * 38.75098 * 16 14 13 18 18 C 1.54104 * 110.54908 * 275.88779 * 16 14 13 19 19 N 1.47050 * 103.86490 * 241.40795 * 18 16 14 20 20 C 1.33948 * 109.17862 * 0.02562 * 19 18 16 21 21 O 1.21582 * 123.03825 * 180.02562 * 20 19 18 22 22 N 1.33943 * 113.91648 * 359.97438 * 20 19 18 23 23 C 1.47800 * 134.58658 * 353.45992 * 9 7 2 24 24 H 0.96993 * 120.00415 * 0.02562 * 1 2 3 25 25 H 1.08998 * 113.76743 * 41.06887 * 10 9 7 26 26 H 1.09002 * 113.77164 * 269.78448 * 10 9 7 27 27 H 1.08996 * 113.74568 * 137.89708 * 11 10 9 28 28 H 1.09009 * 109.46603 * 304.99241 * 12 11 10 29 29 H 1.08997 * 109.47953 * 64.99415 * 12 11 10 30 30 H 0.97004 * 119.99850 * 359.97438 * 13 12 11 31 31 H 1.09000 * 110.54511 * 0.02562 * 18 16 14 32 32 H 1.08997 * 110.54655 * 122.81078 * 18 16 14 33 33 H 0.96997 * 125.40897 * 180.02562 * 19 18 16 34 34 H 0.97001 * 125.41198 * 180.02562 * 22 20 19 35 35 H 1.09006 * 113.66990 * 90.26444 * 23 9 7 36 36 H 1.09004 * 113.93913 * 318.92209 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5042 2.6201 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0833 9 7 1.3297 -2.3858 -0.1039 10 6 1.7289 -3.7985 -0.2549 11 6 0.3708 -4.1449 0.3818 12 6 0.4200 -4.2745 1.9055 13 7 -0.8849 -4.7201 2.4001 14 6 -1.0780 -4.9040 3.7213 15 8 -0.1713 -4.7009 4.5007 16 6 -2.4206 -5.3618 4.2301 17 1 -2.8526 -6.1008 3.5553 18 6 -3.3714 -4.1616 4.4032 19 7 -3.6831 -4.1634 5.8403 20 6 -3.0381 -5.1790 6.4292 21 8 -3.1187 -5.4145 7.6193 22 7 -2.2972 -5.9123 5.5881 23 6 -0.0991 -2.7639 -0.1102 24 1 -0.4850 0.8400 -0.0004 25 1 2.5857 -4.0807 0.3569 26 1 1.8226 -4.1202 -1.2922 27 1 -0.1395 -4.9792 -0.0993 28 1 1.1820 -5.0027 2.1838 29 1 0.6641 -3.3073 2.3449 30 1 -1.6103 -4.8822 1.7768 31 1 -2.8726 -3.2345 4.1208 32 1 -4.2779 -4.3036 3.8149 33 1 -4.2636 -3.5299 6.2903 34 1 -1.7640 -6.6840 5.8355 35 1 -0.5432 -2.7799 -1.1056 36 1 -0.7035 -2.2209 0.6164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031944721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:33 Heat of formation + Delta-G solvation = 7.524268 kcal Electronic energy + Delta-G solvation = -20342.321942 eV Core-core repulsion = 17056.978284 eV Total energy + Delta-G solvation = -3285.343657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41665 -39.33446 -38.05910 -36.29584 -34.42876 -33.17268 -32.22638 -29.92168 -28.31098 -26.02565 -24.87666 -23.87768 -22.31017 -21.93361 -20.60844 -18.99756 -18.03197 -17.46262 -16.83550 -16.49939 -15.94054 -15.61353 -15.31740 -14.85200 -14.59728 -14.28528 -14.00615 -13.77510 -13.39044 -13.19911 -12.89635 -12.60271 -12.24115 -11.56237 -11.17803 -11.07064 -10.78195 -10.56478 -10.46702 -10.26506 -9.95043 -9.82237 -9.56907 -9.49386 -9.01701 -8.88024 -8.82924 -6.91477 -5.82841 -3.13400 2.38157 2.64775 2.91948 3.22601 3.37254 3.43105 3.44513 3.83689 4.06034 4.43015 4.52096 4.57672 5.04484 5.12789 5.20146 5.23797 5.30375 5.42528 5.53029 5.89505 6.03095 6.26188 6.42603 6.50324 6.56875 6.67820 6.80124 6.96437 7.12534 7.17725 7.20904 7.50784 7.54316 7.93420 8.19868 8.46599 9.00637 9.66993 10.55662 11.35127 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.004189 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.094450 B = 6682.767656 C = 7264.390397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.126 3.874 11 C -0.156 4.156 12 C 0.148 3.852 13 N -0.715 5.715 14 C 0.496 3.504 15 O -0.524 6.524 16 C 0.104 3.896 17 H 0.116 0.884 18 C 0.103 3.897 19 N -0.738 5.738 20 C 0.707 3.293 21 O -0.588 6.588 22 N -0.715 5.715 23 C 0.169 3.831 24 H 0.253 0.747 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.400 0.600 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.432 0.568 34 H 0.433 0.567 35 H 0.029 0.971 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -12.224 2.689 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.338 5.338 10 C -0.001 4.001 11 C -0.176 4.176 12 C 0.025 3.975 13 N -0.367 5.367 14 C 0.279 3.721 15 O -0.399 6.399 16 C -0.007 4.007 17 H 0.133 0.867 18 C -0.023 4.023 19 N -0.401 5.401 20 C 0.405 3.595 21 O -0.466 6.466 22 N -0.377 5.377 23 C 0.043 3.957 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.234 0.766 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.274 0.726 34 H 0.275 0.725 35 H 0.046 0.954 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.283 -11.834 3.887 14.958 hybrid contribution 0.194 0.931 -0.544 1.096 sum -8.089 -10.903 3.343 13.982 Atomic orbital electron populations 1.69807 1.05056 1.25354 1.56540 1.24781 0.95653 0.97465 1.02290 0.86161 0.78890 0.83662 0.77482 1.21642 1.21701 1.20513 1.19037 0.90823 0.82127 1.43145 0.90231 1.46025 1.02238 1.00685 1.84824 1.22532 0.94164 0.86560 0.96796 1.23462 1.00454 0.99859 0.93844 1.21128 0.82677 1.00603 0.93110 1.46033 1.15729 1.68128 1.06778 1.20644 0.89750 0.78814 0.82895 1.90770 1.43634 1.49889 1.55614 1.21873 0.94374 0.97116 0.87317 0.86683 1.22287 0.98554 0.98076 0.83370 1.45042 1.52798 1.33268 1.09032 1.15845 0.78864 0.80033 0.84708 1.90991 1.69191 1.73539 1.12884 1.44802 1.52080 1.33818 1.06981 1.22288 0.88284 0.87348 0.97741 0.93688 0.93706 0.94513 0.91379 0.92076 0.89878 0.76566 0.88980 0.88494 0.72564 0.72459 0.95359 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 11.53 55.49 0.64 -25.76 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.13 10.70 -15.06 -0.16 -6.29 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -14.81 3.60 -176.91 -0.64 -15.45 16 10 C 0.13 2.37 8.50 -2.97 -0.03 2.34 16 11 C -0.16 -2.49 4.00 -89.68 -0.36 -2.85 16 12 C 0.15 2.31 5.44 -4.04 -0.02 2.29 16 13 N -0.72 -8.41 5.56 -60.30 -0.33 -8.74 16 14 C 0.50 6.33 6.93 -10.99 -0.08 6.25 16 15 O -0.52 -9.39 16.60 5.56 0.09 -9.30 16 16 C 0.10 0.91 4.17 -68.20 -0.28 0.62 16 17 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 18 C 0.10 0.81 7.70 -3.17 -0.02 0.78 16 19 N -0.74 -7.44 6.37 -64.71 -0.41 -7.85 16 20 C 0.71 9.58 8.92 -88.40 -0.79 8.79 16 21 O -0.59 -10.42 18.05 5.29 0.10 -10.33 16 22 N -0.71 -7.94 5.63 -59.33 -0.33 -8.27 16 23 C 0.17 3.56 6.93 -2.85 -0.02 3.54 16 24 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 29 H 0.08 1.68 7.98 -51.93 -0.41 1.26 16 30 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 31 H 0.09 0.83 7.72 -51.93 -0.40 0.43 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.43 3.57 8.96 -40.82 -0.37 3.20 16 34 H 0.43 4.41 8.96 -40.82 -0.37 4.04 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.64 7.33 -51.93 -0.38 1.26 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -36.90 309.51 -7.88 -44.79 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.78 Total: 4.13 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -1.86 Total: 15.25 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -1.08 Total: -66.07 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.19 Total: -19.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.90 -7.88 -44.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031944721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.311 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds