Wall clock time and date at job start Mon Mar 30 2020 01:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48491 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47321 * 300.00319 * 3 2 1 6 6 H 1.48502 * 109.46960 * 59.99720 * 3 2 1 7 7 C 1.38816 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99437 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00363 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.48906 * 359.97438 * 9 7 2 11 11 C 1.53947 * 86.11463 * 155.36127 * 10 9 7 12 12 C 1.47573 * 134.49418 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.77162 * 90.33937 * 12 9 7 14 14 C 1.52999 * 113.77233 * 318.93702 * 12 9 7 15 15 N 1.46506 * 109.46923 * 78.50553 * 14 12 9 16 16 C 1.34772 * 120.00210 * 180.02562 * 15 14 12 17 17 O 1.21290 * 119.99799 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00379 * 179.97438 * 16 15 14 19 19 H 1.09006 * 110.48346 * 42.69948 * 18 16 15 20 20 C 1.54106 * 110.54942 * 280.00009 * 18 16 15 21 21 N 1.47052 * 103.85905 * 241.40129 * 20 18 16 22 22 C 1.33945 * 109.17950 * 0.02562 * 21 20 18 23 23 O 1.21595 * 123.03663 * 179.97438 * 22 21 20 24 24 N 1.33939 * 113.92192 * 359.97438 * 22 21 20 25 25 H 0.97003 * 120.00336 * 0.02562 * 1 2 3 26 26 H 1.08996 * 113.77114 * 41.06470 * 10 9 7 27 27 H 1.09000 * 113.77347 * 269.66390 * 10 9 7 28 28 H 1.09004 * 113.74083 * 137.95224 * 11 10 9 29 29 H 1.08999 * 113.74208 * 269.26384 * 11 10 9 30 30 H 1.08992 * 109.47683 * 198.50706 * 14 12 9 31 31 H 1.09004 * 109.47230 * 318.51326 * 14 12 9 32 32 H 0.96999 * 119.99515 * 0.02562 * 15 14 12 33 33 H 1.09003 * 110.54787 * 359.97438 * 20 18 16 34 34 H 1.08995 * 110.54727 * 122.80925 * 20 18 16 35 35 H 0.97006 * 125.40702 * 179.97438 * 21 20 18 36 36 H 0.96999 * 125.41521 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1033 -2.7574 -0.0019 11 6 0.3470 -4.0824 -0.6434 12 6 1.7201 -3.8101 -0.0019 13 1 1.8311 -4.2355 0.9955 14 6 2.9030 -4.1217 -0.9209 15 7 4.1499 -3.7188 -0.2656 16 6 5.3293 -3.8986 -0.8925 17 8 5.3585 -4.3944 -1.9990 18 6 6.6118 -3.4836 -0.2187 19 1 6.6016 -3.7730 0.8322 20 6 6.8298 -1.9645 -0.3593 21 7 8.0881 -1.8575 -1.1127 22 6 8.5472 -3.0872 -1.3796 23 8 9.5761 -3.2917 -1.9943 24 7 7.7703 -4.0711 -0.9081 25 1 -0.4851 0.8400 -0.0004 26 1 -0.7169 -2.1386 -0.6566 27 1 -0.5273 -2.8739 0.9955 28 1 -0.1592 -4.9595 -0.2403 29 1 0.3591 -4.0606 -1.7331 30 1 2.9306 -5.1915 -1.1277 31 1 2.7907 -3.5736 -1.8563 32 1 4.1265 -3.3226 0.6195 33 1 6.0105 -1.5105 -0.9169 34 1 6.9304 -1.5001 0.6215 35 1 8.5171 -1.0280 -1.3753 36 1 7.9442 -5.0204 -1.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038651389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:31 Heat of formation + Delta-G solvation = -23.205583 kcal Electronic energy + Delta-G solvation = -20736.436179 eV Core-core repulsion = 17449.759976 eV Total energy + Delta-G solvation = -3286.676204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.34487 -40.46831 -39.46382 -37.37228 -35.55678 -34.13806 -34.03358 -30.93268 -29.79947 -28.67861 -25.23566 -25.07484 -23.48386 -22.84729 -21.64676 -20.79297 -19.26014 -18.77994 -18.18418 -17.46611 -17.03637 -16.97381 -16.60769 -16.19517 -15.70797 -15.51329 -15.24416 -15.03900 -14.69656 -14.61552 -13.93562 -13.61019 -13.31524 -13.11089 -12.92877 -12.63799 -12.52227 -12.21536 -11.79711 -11.60902 -11.48600 -11.42039 -11.12572 -10.78455 -10.55996 -10.02391 -9.85253 -8.82559 -7.80028 -5.11672 1.44270 1.49300 1.51270 1.59815 1.68147 1.97376 2.24124 2.53388 3.02352 3.30018 3.37095 3.45639 3.65368 3.98652 4.04449 4.17805 4.34580 4.41559 4.61144 4.65916 4.70996 4.77054 4.92351 5.10712 5.16104 5.40208 5.45390 5.67422 5.80169 5.88905 6.03440 6.18790 6.24574 6.56933 7.00708 7.20169 7.49481 7.73059 8.67175 9.37477 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.005864 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.210553 B = 4773.347251 C = 6051.962193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.076 4.076 3 Si 0.963 3.037 4 H -0.249 1.249 5 H -0.309 1.309 6 H -0.300 1.300 7 C -0.205 4.205 8 H 0.098 0.902 9 N -0.628 5.628 10 C 0.148 3.852 11 C -0.135 4.135 12 C 0.136 3.864 13 H 0.078 0.922 14 C 0.132 3.868 15 N -0.699 5.699 16 C 0.498 3.502 17 O -0.579 6.579 18 C 0.111 3.889 19 H 0.166 0.834 20 C 0.099 3.901 21 N -0.730 5.730 22 C 0.696 3.304 23 O -0.637 6.637 24 N -0.710 5.710 25 H 0.242 0.758 26 H 0.034 0.966 27 H 0.022 0.978 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.439 0.561 36 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 -7.637 5.478 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.268 4.268 3 Si 0.793 3.207 4 H -0.172 1.172 5 H -0.238 1.238 6 H -0.227 1.227 7 C -0.334 4.334 8 H 0.116 0.884 9 N -0.355 5.355 10 C 0.022 3.978 11 C -0.174 4.174 12 C 0.030 3.970 13 H 0.095 0.905 14 C 0.007 3.993 15 N -0.350 5.350 16 C 0.283 3.717 17 O -0.459 6.459 18 C 0.001 3.999 19 H 0.183 0.817 20 C -0.026 4.026 21 N -0.392 5.392 22 C 0.395 3.605 23 O -0.520 6.520 24 N -0.371 5.371 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.252 0.748 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.282 0.718 36 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 9.832 -7.759 4.414 13.280 hybrid contribution -0.091 1.420 0.009 1.423 sum 9.742 -6.339 4.423 12.436 Atomic orbital electron populations 1.70021 1.06560 1.24885 1.59455 1.25544 0.96320 1.00665 1.04313 0.85221 0.79305 0.80361 0.75822 1.17227 1.23760 1.22745 1.19444 0.91104 0.82639 1.40211 0.88448 1.46429 1.03051 1.00123 1.85879 1.22155 0.87442 0.91806 0.96376 1.23591 0.95680 0.97786 1.00293 1.22669 0.92891 0.84470 0.96958 0.90454 1.21540 0.82650 0.99403 0.95712 1.45855 1.05274 1.62282 1.21613 1.21254 0.86138 0.78445 0.85847 1.90727 1.87734 1.45942 1.21450 1.22107 0.83503 0.94381 0.99912 0.81719 1.22559 0.86827 0.92876 1.00293 1.45061 1.26422 1.07004 1.60759 1.16133 0.82803 0.82741 0.78839 1.90945 1.27488 1.85046 1.48480 1.44804 1.23275 1.08837 1.60189 0.94929 0.94723 0.95978 0.88987 0.90748 0.90227 0.94181 0.74806 0.90292 0.84268 0.71757 0.72128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.31 11.38 21.65 0.25 -55.06 16 2 C -0.08 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 42.15 29.55 68.60 2.03 44.17 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.31 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.21 -9.84 10.51 84.03 0.88 -8.96 16 8 H 0.10 4.16 7.80 -2.91 -0.02 4.14 16 9 N -0.63 -27.35 3.57 -694.09 -2.48 -29.84 16 10 C 0.15 6.34 7.51 86.48 0.65 6.99 16 11 C -0.13 -4.24 7.86 31.27 0.25 -4.00 16 12 C 0.14 4.28 4.33 45.11 0.20 4.47 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.13 3.88 5.54 86.38 0.48 4.36 16 15 N -0.70 -16.94 5.53 -463.05 -2.56 -19.50 16 16 C 0.50 12.61 6.95 87.66 0.61 13.22 16 17 O -0.58 -20.36 16.56 -3.06 -0.05 -20.41 16 18 C 0.11 1.90 4.17 44.51 0.19 2.08 16 19 H 0.17 1.31 8.14 -2.38 -0.02 1.29 16 20 C 0.10 1.61 7.70 86.65 0.67 2.28 16 21 N -0.73 -15.09 6.37 -477.34 -3.04 -18.13 16 22 C 0.70 19.31 8.92 179.57 1.60 20.91 16 23 O -0.64 -23.43 18.05 -4.02 -0.07 -23.50 16 24 N -0.71 -15.77 5.60 -460.33 -2.58 -18.35 16 25 H 0.24 13.83 8.31 -92.71 -0.77 13.05 16 26 H 0.03 1.74 7.15 -2.39 -0.02 1.73 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.42 8.34 8.47 -92.71 -0.79 7.56 16 33 H 0.08 1.56 7.72 -2.39 -0.02 1.55 16 34 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.44 7.62 8.96 -92.70 -0.83 6.79 16 36 H 0.44 8.96 8.96 -92.71 -0.83 8.13 16 Total: -1.00 -77.40 309.42 -3.84 -81.24 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -1.31 Total: 21.55 kcal Atomic # 6 Polarization: 31.83 SS G_CDS: 5.98 Total: 37.82 kcal Atomic # 7 Polarization: -130.45 SS G_CDS: -10.41 Total: -140.87 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.12 Total: -43.91 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -77.40 -3.84 -81.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038651389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.037 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds