Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47200 * 2 1 4 4 C 1.34224 * 116.99971 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00428 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00019 * 180.02562 * 4 3 2 7 7 N 1.46894 * 109.47352 * 179.97438 * 6 4 3 8 8 C 1.46901 * 111.00027 * 169.99670 * 7 6 4 9 9 C 1.50699 * 109.47297 * 288.63918 * 8 7 6 10 10 H 1.07997 * 120.00015 * 354.96793 * 9 8 7 11 11 C 1.37876 * 120.00171 * 174.96784 * 9 8 7 12 12 N 1.31523 * 119.99673 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00183 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47066 * 89.99739 * 13 11 9 15 15 H 1.48501 * 109.47314 * 209.99806 * 13 11 9 16 16 H 1.48494 * 109.46957 * 330.00087 * 13 11 9 17 17 C 1.46899 * 110.99888 * 293.94774 * 7 6 4 18 18 C 1.50704 * 109.47185 * 163.92721 * 17 7 6 19 19 C 1.34329 * 126.16719 * 94.98604 * 18 17 7 20 20 O 1.34746 * 107.11236 * 179.81250 * 19 18 17 21 21 C 1.33967 * 107.75764 * 0.35570 * 20 19 18 22 22 N 1.30256 * 108.75844 * 359.63960 * 21 20 19 23 23 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46882 * 299.99776 * 1 2 3 25 25 H 1.08997 * 109.47477 * 60.00141 * 1 2 3 26 26 H 1.09005 * 109.46882 * 240.00224 * 2 1 3 27 27 H 1.08999 * 109.47530 * 120.00635 * 2 1 3 28 28 H 1.08995 * 109.47197 * 59.99199 * 6 4 3 29 29 H 1.09005 * 109.46712 * 299.99572 * 6 4 3 30 30 H 1.09001 * 109.47030 * 48.64389 * 8 7 6 31 31 H 1.09005 * 109.46820 * 168.63773 * 8 7 6 32 32 H 0.96996 * 119.99268 * 180.02562 * 12 11 9 33 33 H 1.09007 * 109.47253 * 43.93077 * 17 7 6 34 34 H 1.08997 * 109.47514 * 283.92930 * 17 7 6 35 35 H 1.08006 * 126.43995 * 0.05929 * 19 18 17 36 36 H 1.08001 * 125.61788 * 179.89717 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3876 2.8605 -0.0001 8 6 5.9840 4.1818 -0.2378 9 6 5.7607 4.5829 -1.6732 10 1 5.3014 3.8898 -2.3624 11 6 6.1426 5.8348 -2.1066 12 7 6.7014 6.6791 -1.2671 13 14 5.8651 6.3323 -3.8856 14 1 4.5289 6.9661 -4.0197 15 1 6.9147 7.2980 -4.2991 16 1 5.9311 5.1283 -4.7522 17 6 5.8843 2.2765 1.2530 18 6 7.3186 1.8497 1.0745 19 6 8.4059 2.5710 1.3937 20 8 9.4830 1.8249 1.0792 21 6 9.0430 0.6675 0.5677 22 7 7.7405 0.6784 0.5663 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.5851 3.4690 0.8904 29 1 3.5844 3.4700 -0.8896 30 1 5.5181 4.9146 0.4210 31 1 7.0541 4.1393 -0.0347 32 1 6.9698 7.5600 -1.5720 33 1 5.2774 1.4100 1.5157 34 1 5.8224 3.0183 2.0492 35 1 8.4150 3.5610 1.8253 36 1 9.6657 -0.1428 0.2183 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141132271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -50.470274 kcal Electronic energy + Delta-G solvation = -20567.415944 eV Core-core repulsion = 17247.264703 eV Total energy + Delta-G solvation = -3320.151240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.80294 -40.06737 -37.17465 -35.75790 -34.18646 -32.57603 -31.71095 -30.36780 -28.07902 -27.19391 -24.41726 -23.09370 -22.29146 -21.54072 -20.72740 -19.81324 -17.28738 -17.10512 -16.51842 -16.29937 -16.12430 -15.78569 -14.88442 -14.72461 -14.31852 -14.16374 -13.73833 -13.42545 -13.07969 -12.84182 -12.46006 -12.00669 -11.99597 -11.63823 -11.41780 -11.30819 -11.17398 -10.80601 -10.75558 -10.55392 -10.29540 -10.03277 -9.98914 -9.71055 -9.27858 -8.51505 -8.37953 -7.40987 -6.09084 -4.10490 1.97051 2.71865 2.94604 3.20456 3.29243 3.35001 3.36033 3.41708 4.39460 4.58582 4.93804 4.95534 4.99757 5.15388 5.26905 5.30990 5.41850 5.43521 5.73315 5.75080 5.79046 5.93164 5.95115 6.04229 6.12969 6.31438 6.40569 6.73004 6.81120 7.07070 7.16221 7.72613 7.87773 8.03579 8.25280 8.29115 8.42711 8.97346 9.54464 11.01280 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.007593 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.762677 B = 3686.899896 C = 5848.042652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.454 3.546 5 O -0.484 6.484 6 C 0.076 3.924 7 N -0.517 5.517 8 C 0.192 3.808 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.128 3.872 18 C 0.016 3.984 19 C -0.067 4.067 20 O -0.212 6.212 21 C 0.148 3.852 22 N -0.461 5.461 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.001 0.999 31 H 0.037 0.963 32 H 0.262 0.738 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.212 0.788 36 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -9.607 6.228 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.284 6.284 4 C 0.296 3.704 5 O -0.369 6.369 6 C -0.053 4.053 7 N -0.243 5.243 8 C 0.068 3.932 9 C -0.549 4.549 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.537 5.537 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.001 4.001 18 C -0.104 4.104 19 C -0.138 4.138 20 O -0.098 6.098 21 C -0.079 4.079 22 N -0.189 5.189 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.019 0.981 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.228 0.772 36 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.751 -10.540 5.641 12.864 hybrid contribution 0.205 1.274 -0.241 1.312 sum -4.547 -9.267 5.400 11.649 Atomic orbital electron populations 1.21787 0.93086 1.02523 1.03404 1.22896 0.94932 0.81083 1.02312 1.86515 1.25526 1.31617 1.84789 1.24206 0.79922 0.93643 0.72679 1.90679 1.59756 1.42827 1.43638 1.21508 0.90172 0.88795 1.04846 1.61675 1.02398 1.28357 1.31905 1.19868 0.95070 0.81086 0.97202 1.21143 1.40078 0.98730 0.94919 0.91792 1.24960 0.95187 0.96359 0.97837 1.69942 1.41578 1.07381 1.34810 0.86505 0.77819 0.78395 0.84814 1.20598 1.21237 1.19764 1.20373 0.89444 0.98809 0.91428 1.21437 0.96886 0.90683 1.01412 1.24832 0.83821 0.98458 1.06688 1.84430 1.37033 1.26616 1.61684 1.27978 0.91167 0.88734 0.99997 1.70341 1.09825 1.22328 1.16448 0.90654 0.91655 0.91522 0.91470 0.91667 0.91730 0.85489 0.98095 0.94543 0.92848 0.89418 0.94154 0.77179 0.74174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 37.16 0.38 -1.01 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -5.78 10.22 -39.24 -0.40 -6.18 16 4 C 0.45 8.31 7.52 36.01 0.27 8.58 16 5 O -0.48 -10.11 14.23 -18.75 -0.27 -10.38 16 6 C 0.08 1.44 5.41 -4.98 -0.03 1.41 16 7 N -0.52 -11.32 4.14 -238.96 -0.99 -12.31 16 8 C 0.19 4.76 4.57 -4.98 -0.02 4.74 16 9 C -0.51 -13.97 8.37 -34.44 -0.29 -14.26 16 10 H 0.06 1.78 7.69 -52.49 -0.40 1.37 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 C 0.13 2.48 5.08 -4.97 -0.03 2.46 16 18 C 0.02 0.31 6.09 -82.81 -0.50 -0.19 16 19 C -0.07 -1.18 10.84 29.35 0.32 -0.86 16 20 O -0.21 -3.53 10.77 5.38 0.06 -3.47 16 21 C 0.15 2.32 13.23 52.09 0.69 3.01 16 22 N -0.46 -9.07 11.29 -11.18 -0.13 -9.20 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 29 H 0.13 2.50 7.16 -51.93 -0.37 2.13 16 30 H 0.00 0.03 8.06 -51.93 -0.42 -0.39 16 31 H 0.04 0.96 6.23 -51.93 -0.32 0.63 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.09 1.72 5.81 -51.92 -0.30 1.42 16 34 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.21 3.21 8.06 -52.48 -0.42 2.79 16 36 H 0.24 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -33.56 314.09 -5.10 -38.66 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.75 Total: 0.33 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 0.93 Total: 6.40 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.38 Total: -46.44 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.61 Total: -20.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.56 -5.10 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141132271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.811 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds