Wall clock time and date at job start Mon Mar 30 2020 00:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21609 * 119.99876 * 359.97438 * 14 13 3 16 16 C 1.47396 * 120.00075 * 179.97438 * 14 13 3 17 17 C 1.47102 * 128.56443 * 359.67280 * 16 14 13 18 18 N 1.30007 * 105.33031 * 179.89541 * 17 16 14 19 19 O 1.20652 * 112.30002 * 0.39343 * 18 17 16 20 20 C 1.33492 * 113.15778 * 359.73592 * 19 18 17 21 21 C 1.50704 * 126.82737 * 179.97438 * 20 19 18 22 22 O 1.42896 * 109.47386 * 269.99774 * 21 20 19 23 23 C 1.42899 * 114.00328 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 25 25 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 27 27 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 28 28 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 29 29 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 30 30 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 31 31 H 1.08008 * 127.33351 * 0.02562 * 17 16 14 32 32 H 1.08998 * 109.47467 * 30.00348 * 21 20 19 33 33 H 1.09003 * 109.46489 * 149.99921 * 21 20 19 34 34 H 1.08995 * 109.47382 * 180.02562 * 23 22 21 35 35 H 1.09003 * 109.46812 * 300.00196 * 23 22 21 36 36 H 1.08999 * 109.46974 * 60.00349 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3413 2.6326 0.4315 16 6 0.0449 3.3230 2.6265 17 6 0.8235 3.4651 3.8665 18 7 0.0527 4.1202 4.6831 19 8 -1.0156 4.3866 4.1899 20 6 -1.1376 3.9502 2.9343 21 6 -2.3350 4.1128 2.0337 22 8 -3.2132 2.9983 2.2028 23 6 -4.3866 3.0540 1.3892 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8295 -0.0613 -2.9496 30 1 2.2719 2.1231 1.9978 31 1 1.8235 3.1042 4.0570 32 1 -2.8610 5.0322 2.2910 33 1 -2.0051 4.1613 0.9959 34 1 -5.0007 2.1732 1.5763 35 1 -4.9553 3.9515 1.6328 36 1 -4.0989 3.0802 0.3381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188334837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:09 Heat of formation + Delta-G solvation = -43.523430 kcal Electronic energy + Delta-G solvation = -20851.910762 eV Core-core repulsion = 17532.060759 eV Total energy + Delta-G solvation = -3319.850003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.99725 -40.63744 -38.90595 -36.96918 -34.95633 -34.20022 -33.69986 -32.68268 -29.30564 -28.58219 -26.61988 -25.91167 -24.83276 -23.05579 -21.65410 -21.24466 -19.48308 -18.91516 -18.38714 -17.44488 -17.24871 -17.19866 -16.74663 -16.26189 -16.16227 -15.75325 -15.27186 -14.65158 -14.58571 -13.89321 -13.81520 -13.48498 -13.29037 -13.16197 -12.86913 -12.69903 -12.50657 -12.42872 -12.14691 -12.05354 -11.59720 -11.46399 -11.04865 -10.98478 -10.71307 -10.66773 -10.52328 -9.66273 -8.15192 -6.31825 -0.12748 0.73520 1.45577 1.47521 1.58031 1.60419 2.26259 2.33939 2.54563 2.97400 3.15069 3.23476 3.30935 3.61741 3.97234 4.17272 4.38584 4.51639 4.53168 4.54863 4.59256 4.63829 4.75477 4.79015 4.88624 5.09362 5.28191 5.44569 5.54218 5.61413 5.80045 5.90796 6.04716 6.17218 6.74907 6.88546 7.04515 7.32112 7.48523 8.90487 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.005230 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.692690 B = 5352.155704 C = 6172.423710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.693 5.693 14 C 0.581 3.419 15 O -0.566 6.566 16 C -0.249 4.249 17 C 0.034 3.966 18 N -0.363 5.363 19 O 0.098 5.902 20 C 0.039 3.961 21 C 0.141 3.859 22 O -0.407 6.407 23 C 0.029 3.971 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 6.358 9.550 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.341 5.341 14 C 0.368 3.632 15 O -0.447 6.447 16 C -0.256 4.256 17 C -0.148 4.148 18 N -0.069 5.069 19 O 0.039 5.961 20 C -0.026 4.026 21 C 0.064 3.936 22 O -0.327 6.327 23 C -0.067 4.067 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.249 0.751 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.565 6.528 10.081 15.353 hybrid contribution 1.331 -0.396 -1.047 1.739 sum -8.233 6.132 9.035 13.675 Atomic orbital electron populations 1.21666 0.96926 0.99101 1.00287 1.21803 0.93758 0.99121 1.01380 1.18447 0.93798 0.89160 0.80889 0.97578 1.21587 0.91279 1.38895 1.06724 0.90923 1.25710 1.03065 0.94374 0.95053 1.70042 1.36932 1.38359 1.09887 0.85355 0.79391 0.77745 0.78190 1.18479 1.20616 1.21086 1.46079 1.14672 1.55356 1.17973 1.17072 0.82407 0.78361 0.85403 1.90741 1.52197 1.61183 1.40609 1.22338 0.96841 1.08936 0.97494 1.26864 1.02628 0.97714 0.87622 1.73620 0.93966 1.17375 1.21945 1.84539 1.29054 1.59429 1.23123 1.24588 0.97056 0.95159 0.85793 1.20924 0.85695 0.91390 0.95550 1.87870 1.34646 1.44315 1.65860 1.22983 0.85518 1.03999 0.94154 0.95106 0.93813 0.94078 0.90772 0.94168 0.92588 0.76160 0.75072 0.87195 0.89200 0.88235 0.91165 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.86 2.24 44.24 0.10 13.96 16 4 H 0.01 0.37 7.58 -2.39 -0.02 0.35 16 5 C -0.55 -27.93 8.73 25.60 0.22 -27.70 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -50.94 11.29 21.45 0.24 -50.70 16 9 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 13 N -0.69 -27.76 5.02 -449.39 -2.26 -30.02 16 14 C 0.58 22.79 6.38 86.65 0.55 23.34 16 15 O -0.57 -25.45 12.38 -4.06 -0.05 -25.50 16 16 C -0.25 -7.88 6.47 -18.75 -0.12 -8.00 16 17 C 0.03 0.88 11.95 87.29 1.04 1.92 16 18 N -0.36 -9.95 12.01 -54.21 -0.65 -10.60 16 19 O 0.10 2.67 11.06 77.00 0.85 3.52 16 20 C 0.04 1.11 7.18 25.48 0.18 1.29 16 21 C 0.14 3.51 6.05 71.24 0.43 3.94 16 22 O -0.41 -11.08 10.69 -148.98 -1.59 -12.67 16 23 C 0.03 0.54 11.01 113.37 1.25 1.79 16 24 H 0.03 1.45 7.84 -2.38 -0.02 1.43 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.79 5.64 -2.39 -0.01 1.78 16 27 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 28 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.40 13.56 7.90 -92.71 -0.73 12.83 16 31 H 0.23 4.29 7.88 -2.91 -0.02 4.26 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.51 6.78 -2.39 -0.02 2.50 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.02 307.04 3.83 -61.18 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.38 Total: 20.29 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.89 Total: 1.41 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.66 Total: -91.32 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.79 Total: -34.66 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -65.02 3.83 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188334837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.658 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds