Wall clock time and date at job start Mon Mar 30 2020 01:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48500 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47019 * 300.00355 * 3 2 1 6 6 H 1.48500 * 109.46913 * 59.99760 * 3 2 1 7 7 C 1.37880 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46826 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99470 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46596 * 150.00605 * 11 10 9 13 13 C 1.38233 * 120.00109 * 39.72259 * 12 11 10 14 14 C 1.38238 * 119.99754 * 179.76611 * 13 12 11 15 15 C 1.38234 * 120.00016 * 0.50732 * 14 13 12 16 16 C 1.38238 * 120.00063 * 359.74632 * 15 14 13 17 17 C 1.38235 * 120.00108 * 0.02562 * 16 15 14 18 18 C 1.50696 * 109.47297 * 270.00093 * 11 10 9 19 19 C 1.38244 * 119.99883 * 324.73305 * 18 11 10 20 20 C 1.38232 * 119.99523 * 179.76337 * 19 18 11 21 21 C 1.38237 * 120.00662 * 0.50738 * 20 19 18 22 22 C 1.38235 * 119.99316 * 359.74687 * 21 20 19 23 23 C 1.38228 * 120.00438 * 359.97438 * 22 21 20 24 24 H 0.96996 * 120.00210 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47143 * 60.00345 * 9 7 2 26 26 H 1.08999 * 109.47448 * 300.00206 * 9 7 2 27 27 H 1.08996 * 109.47562 * 30.00686 * 11 10 9 28 28 H 1.08004 * 119.99934 * 0.02562 * 13 12 11 29 29 H 1.07999 * 119.99924 * 180.23621 * 14 13 12 30 30 H 1.08001 * 120.00318 * 179.72031 * 15 14 13 31 31 H 1.08000 * 120.00578 * 179.97438 * 16 15 14 32 32 H 1.07999 * 120.00165 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.99937 * 359.97438 * 19 18 11 34 34 H 1.08004 * 119.99737 * 180.22892 * 20 19 18 35 35 H 1.07996 * 120.00483 * 179.72337 * 21 20 19 36 36 H 1.08005 * 119.99777 * 179.97438 * 22 21 20 37 37 H 1.08004 * 120.00511 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0017 11 6 1.5652 -4.8754 -0.0013 12 6 2.4594 -5.8579 -0.7127 13 6 3.8287 -5.8037 -0.5308 14 6 4.6484 -6.7081 -1.1797 15 6 4.0998 -7.6600 -2.0186 16 6 2.7309 -7.7109 -2.2046 17 6 1.9108 -6.8095 -1.5521 18 6 1.3507 -5.3291 1.4197 19 6 2.2732 -5.0026 2.3962 20 6 2.0738 -5.4146 3.7006 21 6 0.9576 -6.1621 4.0265 22 6 0.0380 -6.4931 3.0489 23 6 0.2343 -6.0762 1.7457 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 0.6050 -4.8206 -0.5141 28 1 4.2576 -5.0574 0.1215 29 1 5.7179 -6.6682 -1.0346 30 1 4.7406 -8.3637 -2.5291 31 1 2.3023 -8.4543 -2.8603 32 1 0.8414 -6.8490 -1.6977 33 1 3.1476 -4.4227 2.1407 34 1 2.7926 -5.1564 4.4642 35 1 0.8042 -6.4879 5.0447 36 1 -0.8339 -7.0774 3.3034 37 1 -0.4840 -6.3351 0.9818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205603867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:02 Heat of formation + Delta-G solvation = -18.045585 kcal Electronic energy + Delta-G solvation = -19485.446915 eV Core-core repulsion = 16577.550978 eV Total energy + Delta-G solvation = -2907.895937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97072 -39.53176 -38.23643 -35.08331 -33.51896 -31.91597 -31.63814 -31.23301 -29.45826 -26.67614 -24.71069 -23.59296 -23.08427 -23.01186 -21.53874 -18.82299 -18.03319 -17.68334 -17.44335 -16.52658 -16.48377 -16.18367 -15.55412 -15.31950 -15.16429 -15.03814 -14.34201 -14.19477 -14.15539 -13.98165 -13.49677 -13.36486 -12.94478 -12.86738 -12.74342 -12.27428 -12.18181 -12.00350 -11.87431 -11.73207 -11.30428 -10.94972 -10.33154 -9.82101 -9.81320 -9.77703 -9.49396 -8.34652 -6.47243 0.30369 0.50748 0.53773 0.57899 1.37290 1.38859 1.53399 2.31491 2.83026 2.91345 2.99150 3.06487 3.79784 3.93693 4.08462 4.09922 4.16373 4.23152 4.27485 4.33750 4.38340 4.65504 4.67970 4.72562 4.73831 4.82689 5.02915 5.11152 5.14459 5.16717 5.18735 5.49394 5.55077 5.58006 5.60746 5.63095 5.69326 5.73747 5.93785 6.11896 6.14638 6.49560 6.77332 7.24295 8.77949 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.006125 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.984656 B = 4570.107596 C = 5780.440320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.217 3.783 10 O -0.386 6.386 11 C 0.160 3.840 12 C -0.090 4.090 13 C -0.111 4.111 14 C -0.128 4.128 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.126 4.126 24 H 0.271 0.729 25 H -0.017 1.017 26 H -0.018 1.018 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -17.059 1.911 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.142 3.858 10 O -0.306 6.306 11 C 0.102 3.898 12 C -0.090 4.090 13 C -0.129 4.129 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.144 4.144 24 H 0.080 0.920 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.170 0.830 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.969 -16.918 1.906 17.481 hybrid contribution -0.236 1.263 -0.023 1.285 sum 3.733 -15.654 1.883 16.203 Atomic orbital electron populations 1.70079 1.07771 1.28589 1.50453 1.25952 0.95943 1.03336 0.93871 0.85153 0.78676 0.77347 0.78348 1.18817 1.19537 1.19596 1.21364 0.94019 0.90654 1.52244 0.92041 1.19786 0.88469 0.84462 0.93036 1.87871 1.34917 1.13200 1.94609 1.19713 0.94781 0.83587 0.91766 1.19733 0.94487 0.96550 0.98250 1.21036 0.93278 0.98627 0.99936 1.21423 1.00553 0.95274 0.97307 1.21533 0.95596 0.98665 0.98043 1.21429 0.93879 0.98931 0.99575 1.21188 1.00867 0.95512 0.96553 1.20399 0.96193 0.99255 0.95526 1.21032 0.99167 0.99006 0.93829 1.21426 0.99148 0.98588 0.95665 1.21511 0.93926 0.98012 1.00648 1.21439 1.00217 1.00220 0.92213 1.21220 0.96665 0.98427 0.98137 0.92026 0.99976 1.00014 0.92341 0.87559 0.84078 0.82868 0.82919 0.85126 0.87571 0.84262 0.82974 0.83046 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 45.17 29.54 68.60 2.03 47.19 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.22 12.65 5.49 71.24 0.39 13.04 16 10 O -0.39 -19.64 8.44 -148.98 -1.26 -20.90 16 11 C 0.16 6.58 2.52 29.10 0.07 6.66 16 12 C -0.09 -3.20 4.96 -19.86 -0.10 -3.30 16 13 C -0.11 -3.78 9.35 22.27 0.21 -3.57 16 14 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 15 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 16 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 17 C -0.12 -3.57 9.67 22.27 0.22 -3.35 16 18 C -0.11 -4.28 4.93 -19.86 -0.10 -4.38 16 19 C -0.11 -4.18 9.35 22.27 0.21 -3.97 16 20 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 21 C -0.12 -3.16 10.05 22.27 0.22 -2.94 16 22 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 23 C -0.13 -4.01 9.68 22.27 0.22 -3.79 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.02 -1.07 8.09 -2.38 -0.02 -1.09 16 26 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.06 2.43 7.56 -2.39 -0.02 2.41 16 28 H 0.11 3.95 7.73 -2.91 -0.02 3.93 16 29 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.13 3.33 8.04 -2.91 -0.02 3.31 16 33 H 0.11 4.28 7.60 -2.91 -0.02 4.26 16 34 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -71.41 323.40 5.25 -66.16 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.04 Total: 16.74 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.16 Total: -52.57 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.28 Total: -56.63 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.26 Total: -20.90 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.41 5.25 -66.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205603867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.116 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds