Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48502 * 109.47034 * 270.00002 * 3 2 1 5 5 H 1.48495 * 109.47021 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.46893 * 149.99839 * 3 2 1 7 7 C 1.37878 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99412 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.42897 * 114.00335 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.24256 * 27.98969 * 12 11 10 14 14 C 1.54433 * 110.27862 * 265.88114 * 12 11 10 15 15 C 1.50930 * 105.31126 * 241.04968 * 14 12 11 16 16 C 1.36154 * 134.63891 * 179.97438 * 15 14 12 17 17 C 1.39652 * 120.34876 * 179.97438 * 16 15 14 18 18 C 1.36519 * 122.32969 * 0.03265 * 17 16 15 19 19 C 1.40427 * 118.81623 * 359.97438 * 18 17 16 20 20 C 1.40475 * 124.33312 * 179.97438 * 19 18 17 21 21 C 1.36479 * 118.81958 * 180.02562 * 20 19 18 22 22 C 1.39702 * 122.32929 * 0.25219 * 21 20 19 23 23 C 1.36115 * 120.35084 * 359.46769 * 22 21 20 24 24 C 1.39092 * 107.40054 * 359.97438 * 15 14 12 25 25 H 0.97005 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46986 * 60.00004 * 9 7 2 27 27 H 1.08994 * 109.47243 * 299.99875 * 9 7 2 28 28 H 1.08996 * 109.47163 * 59.99871 * 10 9 7 29 29 H 1.09003 * 109.47402 * 299.99600 * 10 9 7 30 30 H 1.09007 * 110.27741 * 0.02562 * 14 12 11 31 31 H 1.09004 * 110.28150 * 121.99583 * 14 12 11 32 32 H 1.08009 * 119.82890 * 0.02562 * 16 15 14 33 33 H 1.08008 * 118.83889 * 180.02562 * 17 16 15 34 34 H 1.08000 * 120.59164 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.58609 * 0.07866 * 20 19 18 36 36 H 1.08002 * 118.83070 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.81856 * 179.70912 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.3706 -6.0557 0.0018 13 1 3.3228 -5.8298 0.4816 14 6 2.6011 -6.5507 -1.4428 15 6 2.0353 -7.9494 -1.4799 16 6 1.9256 -8.9120 -2.4366 17 6 1.3302 -10.1393 -2.1377 18 6 0.8381 -10.4293 -0.8978 19 6 0.9347 -9.4590 0.1127 20 6 0.4675 -9.6336 1.4260 21 6 0.6194 -8.6131 2.3194 22 6 1.2183 -7.3995 1.9726 23 6 1.6868 -7.1996 0.7104 24 6 1.5383 -8.2309 -0.2117 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 2.0735 -5.9106 -2.1501 31 1 3.6668 -6.5666 -1.6713 32 1 2.3018 -8.7256 -3.4318 33 1 1.2564 -10.8856 -2.9151 34 1 0.3834 -11.3882 -0.6974 35 1 -0.0027 -10.5592 1.7235 36 1 0.2600 -8.7469 3.3290 37 1 1.3135 -6.6172 2.7112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205632190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = -6.445590 kcal Electronic energy + Delta-G solvation = -19134.713087 eV Core-core repulsion = 16227.320163 eV Total energy + Delta-G solvation = -2907.392924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25651 -37.68932 -36.41325 -34.84697 -33.08520 -30.42696 -30.05060 -29.52335 -28.07024 -24.88402 -24.11379 -22.92306 -21.35166 -21.04317 -20.63175 -17.44661 -16.85323 -16.40675 -16.01708 -15.81928 -15.10735 -14.75126 -14.47675 -14.03791 -13.83806 -13.43739 -13.23175 -12.89053 -12.73984 -12.35183 -12.15957 -12.03325 -11.46681 -11.17222 -11.04649 -10.96862 -10.86238 -10.60405 -10.47256 -10.37284 -9.75869 -9.50338 -9.21802 -8.97519 -8.60240 -8.37199 -7.74410 -6.04085 -4.08085 0.51255 1.05025 1.99821 2.97559 3.30177 3.36166 3.39142 3.95910 4.25880 4.36106 4.49064 4.61495 4.78729 4.95127 5.01871 5.10003 5.15594 5.31381 5.31952 5.36568 5.48653 5.55058 5.63451 5.71943 6.00074 6.04982 6.10869 6.23503 6.23683 6.25207 6.33047 6.43721 6.51699 6.68397 6.83309 6.85498 7.02001 7.51329 7.77074 7.79506 8.07852 8.33904 8.98488 9.55749 11.07480 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.003735 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.667806 B = 7494.731041 C = 7998.148916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.372 6.372 12 C 0.130 3.870 13 H 0.079 0.921 14 C -0.102 4.102 15 C -0.064 4.064 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.046 4.046 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.089 4.089 23 C -0.069 4.069 24 C -0.076 4.076 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 -21.016 -0.400 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.011 4.011 11 O -0.291 6.291 12 C 0.071 3.929 13 H 0.096 0.904 14 C -0.139 4.139 15 C -0.064 4.064 16 C -0.131 4.131 17 C -0.128 4.128 18 C -0.133 4.133 19 C -0.046 4.046 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.107 4.107 23 C -0.069 4.069 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.573 -20.894 -0.394 21.201 hybrid contribution 0.613 0.916 -0.016 1.102 sum 4.185 -19.978 -0.409 20.416 Atomic orbital electron populations 1.69986 1.06083 1.26784 1.50052 1.24997 0.94871 0.99299 0.95099 0.86526 0.79758 0.83160 0.78159 1.20564 1.21116 1.19813 1.21045 0.92994 0.90521 1.51723 0.92525 1.19071 0.94227 0.89365 0.98520 1.23016 0.96534 0.83115 0.98391 1.88097 1.33213 1.13190 1.94599 1.21181 0.93597 0.85445 0.92648 0.90360 1.21548 1.01459 0.92323 0.98540 1.19965 0.97332 0.95759 0.93351 1.20251 1.01081 0.92920 0.98892 1.20829 0.98514 0.96634 0.96854 1.20961 1.00920 0.98627 0.92838 1.17739 0.98813 0.93667 0.94353 1.21000 1.00475 0.99261 0.92311 1.20907 0.99028 0.93009 0.99772 1.20381 0.97451 0.97088 0.95779 1.19905 0.98685 0.94611 0.93708 1.18259 0.99411 0.94592 0.95322 0.92829 0.95720 0.95706 0.94450 0.94412 0.88161 0.89364 0.85948 0.86150 0.85596 0.85506 0.85890 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 10 C 0.06 1.40 5.72 37.16 0.21 1.62 16 11 O -0.37 -7.63 9.96 -35.23 -0.35 -7.98 16 12 C 0.13 2.12 3.48 -27.02 -0.09 2.02 16 13 H 0.08 1.15 7.81 -51.93 -0.41 0.75 16 14 C -0.10 -1.45 6.71 -27.02 -0.18 -1.63 16 15 C -0.06 -0.91 6.38 -104.94 -0.67 -1.58 16 16 C -0.11 -1.36 10.00 -39.80 -0.40 -1.75 16 17 C -0.11 -1.18 9.89 -39.67 -0.39 -1.58 16 18 C -0.12 -1.29 9.96 -39.38 -0.39 -1.68 16 19 C -0.05 -0.61 5.73 -107.32 -0.61 -1.23 16 20 C -0.11 -1.32 9.96 -39.37 -0.39 -1.71 16 21 C -0.11 -1.32 9.89 -39.67 -0.39 -1.71 16 22 C -0.09 -1.27 10.00 -39.80 -0.40 -1.67 16 23 C -0.07 -1.10 6.05 -104.94 -0.63 -1.73 16 24 C -0.08 -1.15 5.61 -108.34 -0.61 -1.76 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.51 7.98 -51.92 -0.41 1.09 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -32.07 314.25 -10.43 -42.49 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.01 Total: -2.05 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -5.52 Total: -27.45 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.35 Total: -7.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.07 -10.43 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.048 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds