Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48502 * 109.47034 * 270.00002 * 3 2 1 5 5 H 1.48495 * 109.47021 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.46893 * 149.99839 * 3 2 1 7 7 C 1.37878 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99412 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00296 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47061 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.42897 * 114.00335 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.24256 * 27.98969 * 12 11 10 14 14 C 1.54433 * 110.27862 * 265.88114 * 12 11 10 15 15 C 1.50930 * 105.31126 * 241.04968 * 14 12 11 16 16 C 1.36154 * 134.63891 * 179.97438 * 15 14 12 17 17 C 1.39652 * 120.34876 * 179.97438 * 16 15 14 18 18 C 1.36519 * 122.32969 * 0.03265 * 17 16 15 19 19 C 1.40427 * 118.81623 * 359.97438 * 18 17 16 20 20 C 1.40475 * 124.33312 * 179.97438 * 19 18 17 21 21 C 1.36479 * 118.81958 * 180.02562 * 20 19 18 22 22 C 1.39702 * 122.32929 * 0.25219 * 21 20 19 23 23 C 1.36115 * 120.35084 * 359.46769 * 22 21 20 24 24 C 1.39092 * 107.40054 * 359.97438 * 15 14 12 25 25 H 0.97005 * 120.00013 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46986 * 60.00004 * 9 7 2 27 27 H 1.08994 * 109.47243 * 299.99875 * 9 7 2 28 28 H 1.08996 * 109.47163 * 59.99871 * 10 9 7 29 29 H 1.09003 * 109.47402 * 299.99600 * 10 9 7 30 30 H 1.09007 * 110.27741 * 0.02562 * 14 12 11 31 31 H 1.09004 * 110.28150 * 121.99583 * 14 12 11 32 32 H 1.08009 * 119.82890 * 0.02562 * 16 15 14 33 33 H 1.08008 * 118.83889 * 180.02562 * 17 16 15 34 34 H 1.08000 * 120.59164 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.58609 * 0.07866 * 20 19 18 36 36 H 1.08002 * 118.83070 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.81856 * 179.70912 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5307 -4.8996 0.0011 12 6 2.3706 -6.0557 0.0018 13 1 3.3228 -5.8298 0.4816 14 6 2.6011 -6.5507 -1.4428 15 6 2.0353 -7.9494 -1.4799 16 6 1.9256 -8.9120 -2.4366 17 6 1.3302 -10.1393 -2.1377 18 6 0.8381 -10.4293 -0.8978 19 6 0.9347 -9.4590 0.1127 20 6 0.4675 -9.6336 1.4260 21 6 0.6194 -8.6131 2.3194 22 6 1.2183 -7.3995 1.9726 23 6 1.6868 -7.1996 0.7104 24 6 1.5383 -8.2309 -0.2117 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 2.0735 -5.9106 -2.1501 31 1 3.6668 -6.5666 -1.6713 32 1 2.3018 -8.7256 -3.4318 33 1 1.2564 -10.8856 -2.9151 34 1 0.3834 -11.3882 -0.6974 35 1 -0.0027 -10.5592 1.7235 36 1 0.2600 -8.7469 3.3290 37 1 1.3135 -6.6172 2.7112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = -23.401582 kcal Electronic energy + Delta-G solvation = -19135.448354 eV Core-core repulsion = 16227.320163 eV Total energy + Delta-G solvation = -2908.128191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25758 -39.10399 -37.34354 -36.15517 -35.10664 -31.98808 -31.34158 -30.57445 -29.23097 -26.74108 -25.33787 -23.87842 -22.96006 -22.39758 -21.76507 -18.77223 -18.36366 -17.55789 -17.43920 -16.97485 -16.61512 -16.45626 -15.68532 -15.31499 -15.04350 -14.64382 -14.31254 -14.22804 -13.99896 -13.70137 -13.54363 -13.38667 -12.93085 -12.83270 -12.46071 -12.37898 -12.29035 -11.95674 -11.78664 -11.71404 -11.48198 -11.37478 -10.82217 -10.64629 -10.43473 -9.56067 -8.71365 -8.24396 -6.38112 -0.45003 0.08856 1.00971 1.40798 1.43340 1.54529 2.02949 2.37437 2.81778 3.09460 3.22241 3.27571 3.48897 3.92805 3.96545 4.02771 4.11620 4.17428 4.34152 4.41579 4.42146 4.44176 4.51551 4.66600 4.67967 4.70503 4.89978 4.93925 5.11057 5.14764 5.33669 5.35533 5.36540 5.48852 5.55089 5.57523 5.70191 5.71888 5.90281 6.09141 6.10393 6.37439 6.77812 7.31951 8.88738 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.003735 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.667806 B = 7494.731041 C = 7998.148916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.397 6.397 12 C 0.122 3.878 13 H 0.088 0.912 14 C -0.096 4.096 15 C -0.096 4.096 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.069 4.069 20 C -0.102 4.102 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.108 4.108 24 C -0.098 4.098 25 H 0.266 0.734 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.921 -22.858 -0.785 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.009 4.009 10 C 0.007 3.993 11 O -0.317 6.317 12 C 0.065 3.935 13 H 0.106 0.894 14 C -0.133 4.133 15 C -0.096 4.096 16 C -0.126 4.126 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.069 4.069 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.098 4.098 25 H 0.074 0.926 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.576 -22.759 -0.780 23.228 hybrid contribution 0.230 1.324 0.094 1.347 sum 4.806 -21.435 -0.686 21.978 Atomic orbital electron populations 1.70139 1.08122 1.28098 1.50908 1.26069 0.95801 1.03739 0.94245 0.85290 0.78579 0.77548 0.78668 1.19508 1.20702 1.18276 1.21468 0.93786 0.91291 1.51754 0.91216 1.18931 0.94623 0.91982 0.95352 1.22599 0.94866 0.82338 0.99488 1.88034 1.34801 1.13926 1.94943 1.21453 0.93519 0.84059 0.94499 0.89410 1.21440 1.02698 0.92548 0.96599 1.20083 0.99334 0.96166 0.94038 1.20654 0.99823 0.92796 0.99280 1.21257 0.97509 0.96720 0.97772 1.21399 0.99904 0.99275 0.92252 1.18171 0.99200 0.93669 0.95880 1.21457 0.98829 1.00225 0.91394 1.21206 0.99013 0.92245 1.01427 1.20644 0.97541 0.98259 0.95371 1.20022 1.00992 0.94969 0.94827 1.18494 1.00285 0.95389 0.95594 0.92552 0.98942 0.98981 0.93376 0.93021 0.89757 0.87184 0.83834 0.82692 0.82220 0.81876 0.83091 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 44.22 29.54 68.60 2.03 46.25 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.03 1.60 5.34 29.85 0.16 1.76 16 10 C 0.08 3.71 5.72 71.98 0.41 4.12 16 11 O -0.40 -17.19 9.96 -148.98 -1.48 -18.68 16 12 C 0.12 4.16 3.48 30.41 0.11 4.26 16 13 H 0.09 2.69 7.81 -2.39 -0.02 2.67 16 14 C -0.10 -2.80 6.71 30.41 0.20 -2.60 16 15 C -0.10 -2.71 6.38 -20.07 -0.13 -2.84 16 16 C -0.11 -2.38 10.00 22.13 0.22 -2.16 16 17 C -0.11 -2.10 9.89 22.21 0.22 -1.88 16 18 C -0.11 -2.11 9.96 22.40 0.22 -1.89 16 19 C -0.07 -1.74 5.73 -21.61 -0.12 -1.86 16 20 C -0.10 -2.14 9.96 22.40 0.22 -1.92 16 21 C -0.12 -2.79 9.89 22.21 0.22 -2.57 16 22 C -0.10 -2.95 10.00 22.13 0.22 -2.73 16 23 C -0.11 -3.56 6.05 -20.07 -0.12 -3.68 16 24 C -0.10 -2.98 5.61 -22.27 -0.13 -3.10 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 2.66 7.98 -2.38 -0.02 2.65 16 31 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 37 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -72.30 314.25 4.29 -68.01 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.05 Total: 10.27 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 2.41 Total: -47.99 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.48 Total: -18.68 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.30 4.29 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.610 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds