Wall clock time and date at job start Mon Mar 30 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46765 * 2 1 4 4 C 1.34237 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99817 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46840 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47142 * 55.00440 * 7 6 4 9 9 C 1.50700 * 109.46887 * 174.99755 * 7 6 4 10 10 H 1.08002 * 120.00384 * 240.00054 * 9 7 6 11 11 C 1.37882 * 120.00035 * 60.00368 * 9 7 6 12 12 N 1.31512 * 119.99764 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00257 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46869 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47350 * 120.00064 * 13 11 9 16 16 H 1.48504 * 109.47089 * 240.00183 * 13 11 9 17 17 O 1.42899 * 109.47213 * 294.99979 * 7 6 4 18 18 C 1.42903 * 113.99629 * 150.00082 * 17 7 6 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 7 20 20 N 1.30496 * 125.64892 * 180.02562 * 19 18 17 21 21 C 1.34130 * 109.25832 * 180.02562 * 20 19 18 22 22 C 1.34675 * 108.01805 * 0.02562 * 21 20 19 23 23 N 1.35041 * 125.64794 * 359.72194 * 19 18 17 24 24 H 0.96995 * 126.40280 * 359.97438 * 23 19 18 25 25 H 1.08996 * 109.47617 * 299.99643 * 1 2 3 26 26 H 1.09000 * 109.47501 * 60.00273 * 1 2 3 27 27 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47252 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47044 * 119.99944 * 2 1 3 30 30 H 1.09000 * 109.47617 * 60.00227 * 6 4 3 31 31 H 1.09002 * 109.47705 * 299.99974 * 6 4 3 32 32 H 0.97005 * 119.99850 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 18 17 7 34 34 H 1.09001 * 109.46938 * 299.99942 * 18 17 7 35 35 H 1.07999 * 125.99191 * 180.02562 * 21 20 19 36 36 H 1.07993 * 126.59118 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9375 0.0012 7 6 5.4485 2.8574 0.0023 8 1 5.7812 2.2500 -0.8393 9 6 6.0242 4.2446 -0.1209 10 1 6.6597 4.4932 -0.9581 11 6 5.7399 5.1966 0.8351 12 7 4.9666 4.8937 1.8549 13 14 6.4540 6.9159 0.6828 14 1 7.2853 6.9995 -0.5450 15 1 5.3497 7.9052 0.6005 16 1 7.2945 7.2099 1.8713 17 8 5.8935 2.2638 1.2236 18 6 7.1168 1.5349 1.1036 19 6 7.4899 0.9557 2.4439 20 7 8.5485 0.2343 2.6926 21 6 8.5562 -0.1076 3.9896 22 6 7.4604 0.4218 4.5664 23 7 6.7872 1.1022 3.5878 24 1 5.9587 1.5949 3.6953 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.5843 3.4694 0.8912 31 1 3.5849 3.4700 -0.8888 32 1 4.7668 5.5634 2.5277 33 1 7.9072 2.2048 0.7649 34 1 6.9898 0.7284 0.3815 35 1 9.3091 -0.7029 4.4846 36 1 7.1711 0.3313 5.6030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222878243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:11 Heat of formation + Delta-G solvation = -81.406852 kcal Electronic energy + Delta-G solvation = -20782.518349 eV Core-core repulsion = 17461.025597 eV Total energy + Delta-G solvation = -3321.492751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41762 -39.75606 -36.97382 -35.74299 -33.10772 -31.83215 -31.59599 -30.56647 -29.26267 -26.20209 -25.20679 -23.19309 -21.72221 -20.90112 -20.06838 -19.74512 -17.47277 -17.20217 -16.52583 -16.15065 -15.60630 -15.14678 -14.77066 -14.49853 -13.81103 -13.69651 -13.48113 -13.29020 -13.12809 -12.76598 -12.58009 -12.22816 -11.78387 -11.44659 -11.22389 -11.13889 -11.02704 -10.78689 -10.66713 -10.14541 -10.03007 -9.64722 -9.57971 -9.47726 -9.32259 -8.72504 -8.25419 -7.74409 -6.20123 -4.37641 2.61586 3.03288 3.17917 3.28485 3.31595 3.34615 3.62067 3.79927 4.27486 4.49408 5.06764 5.11047 5.14928 5.37782 5.47381 5.51688 5.64016 5.85398 5.87936 5.92520 6.06099 6.09364 6.31034 6.40059 6.45674 6.59856 6.67310 6.84127 7.01609 7.20839 7.37513 7.69629 7.95727 8.00363 8.42306 8.54490 8.62080 8.84021 9.39258 10.81927 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.008484 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.643750 B = 3299.515670 C = 5442.408950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.457 3.543 5 O -0.515 6.515 6 C -0.102 4.102 7 C 0.236 3.764 8 H 0.021 0.979 9 C -0.557 4.557 10 H 0.064 0.936 11 C 0.086 3.914 12 N -0.862 5.862 13 Si 0.892 3.108 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.283 1.283 17 O -0.373 6.373 18 C 0.155 3.845 19 C 0.241 3.759 20 N -0.507 5.507 21 C -0.035 4.035 22 C -0.075 4.075 23 N -0.544 5.544 24 H 0.429 0.571 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.164 0.836 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -6.160 1.340 8.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.302 3.698 5 O -0.403 6.403 6 C -0.139 4.139 7 C 0.180 3.820 8 H 0.039 0.961 9 C -0.595 4.595 10 H 0.082 0.918 11 C -0.120 4.120 12 N -0.498 5.498 13 Si 0.719 3.281 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.209 1.209 17 O -0.292 6.292 18 C 0.076 3.924 19 C -0.024 4.024 20 N -0.229 5.229 21 C -0.184 4.184 22 C -0.210 4.210 23 N -0.146 5.146 24 H 0.268 0.732 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.181 0.819 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.593 -6.613 1.100 8.126 hybrid contribution -0.476 1.169 0.676 1.432 sum -5.069 -5.444 1.776 7.648 Atomic orbital electron populations 1.21776 0.93361 1.02293 1.03301 1.22832 0.94811 0.81913 1.01944 1.86590 1.26389 1.30851 1.84796 1.24995 0.79328 0.94439 0.71081 1.90577 1.60185 1.43670 1.45877 1.21897 0.97550 0.87737 1.06764 1.19354 0.88016 0.91981 0.82661 0.96141 1.21543 1.32371 0.95619 1.09922 0.91766 1.24995 0.93837 0.98655 0.94507 1.69873 1.34920 1.34008 1.10996 0.86557 0.79154 0.84037 0.78369 1.19543 1.20765 1.20861 1.87832 1.36525 1.68761 1.36064 1.20229 0.90300 0.94419 0.87442 1.23332 0.89951 0.99257 0.89868 1.70117 1.20034 1.16448 1.16303 1.22187 0.99283 1.05855 0.91055 1.22655 0.98089 1.04764 0.95508 1.43206 1.22967 1.39951 1.08434 0.73200 0.91648 0.91706 0.90886 0.91915 0.91886 0.84498 0.88547 0.92740 0.91336 0.92165 0.81877 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.66 10.22 -39.28 -0.40 -7.06 16 4 C 0.46 9.42 7.84 36.00 0.28 9.71 16 5 O -0.52 -11.59 15.17 -24.06 -0.36 -11.95 16 6 C -0.10 -2.21 5.22 -27.88 -0.15 -2.35 16 7 C 0.24 5.56 1.82 -27.88 -0.05 5.51 16 8 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 9 C -0.56 -14.04 8.90 -34.44 -0.31 -14.35 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.09 2.17 5.24 -17.82 -0.09 2.07 16 12 N -0.86 -21.99 10.93 55.43 0.61 -21.38 16 13 Si 0.89 19.81 29.54 -169.99 -5.02 14.79 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 O -0.37 -8.81 8.10 -49.68 -0.40 -9.22 16 18 C 0.16 3.41 6.36 36.01 0.23 3.64 16 19 C 0.24 5.09 7.96 -155.42 -1.24 3.85 16 20 N -0.51 -10.51 11.25 -10.81 -0.12 -10.63 16 21 C -0.03 -0.60 11.87 -17.81 -0.21 -0.81 16 22 C -0.07 -1.20 12.04 -16.56 -0.20 -1.40 16 23 N -0.54 -10.25 5.99 -10.23 -0.06 -10.32 16 24 H 0.43 7.94 8.59 -40.82 -0.35 7.59 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.14 3.22 6.22 -51.93 -0.32 2.90 16 31 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 32 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -29.28 315.95 -6.96 -36.25 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.84 Total: 9.03 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.12 Total: 5.73 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.42 Total: -42.33 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.17 Total: -28.23 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.28 -6.96 -36.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222878243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.160 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds