Wall clock time and date at job start Mon Mar 30 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46765 * 2 1 4 4 C 1.34237 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00074 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99817 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.46840 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47142 * 55.00440 * 7 6 4 9 9 C 1.50700 * 109.46887 * 174.99755 * 7 6 4 10 10 H 1.08002 * 120.00384 * 240.00054 * 9 7 6 11 11 C 1.37882 * 120.00035 * 60.00368 * 9 7 6 12 12 N 1.31512 * 119.99764 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00257 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46869 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47350 * 120.00064 * 13 11 9 16 16 H 1.48504 * 109.47089 * 240.00183 * 13 11 9 17 17 O 1.42899 * 109.47213 * 294.99979 * 7 6 4 18 18 C 1.42903 * 113.99629 * 150.00082 * 17 7 6 19 19 C 1.50701 * 109.46878 * 179.97438 * 18 17 7 20 20 N 1.30496 * 125.64892 * 180.02562 * 19 18 17 21 21 C 1.34130 * 109.25832 * 180.02562 * 20 19 18 22 22 C 1.34675 * 108.01805 * 0.02562 * 21 20 19 23 23 N 1.35041 * 125.64794 * 359.72194 * 19 18 17 24 24 H 0.96995 * 126.40280 * 359.97438 * 23 19 18 25 25 H 1.08996 * 109.47617 * 299.99643 * 1 2 3 26 26 H 1.09000 * 109.47501 * 60.00273 * 1 2 3 27 27 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47252 * 239.99971 * 2 1 3 29 29 H 1.09004 * 109.47044 * 119.99944 * 2 1 3 30 30 H 1.09000 * 109.47617 * 60.00227 * 6 4 3 31 31 H 1.09002 * 109.47705 * 299.99974 * 6 4 3 32 32 H 0.97005 * 119.99850 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 18 17 7 34 34 H 1.09001 * 109.46938 * 299.99942 * 18 17 7 35 35 H 1.07999 * 125.99191 * 180.02562 * 21 20 19 36 36 H 1.07993 * 126.59118 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9205 2.9375 0.0012 7 6 5.4485 2.8574 0.0023 8 1 5.7812 2.2500 -0.8393 9 6 6.0242 4.2446 -0.1209 10 1 6.6597 4.4932 -0.9581 11 6 5.7399 5.1966 0.8351 12 7 4.9666 4.8937 1.8549 13 14 6.4540 6.9159 0.6828 14 1 7.2853 6.9995 -0.5450 15 1 5.3497 7.9052 0.6005 16 1 7.2945 7.2099 1.8713 17 8 5.8935 2.2638 1.2236 18 6 7.1168 1.5349 1.1036 19 6 7.4899 0.9557 2.4439 20 7 8.5485 0.2343 2.6926 21 6 8.5562 -0.1076 3.9896 22 6 7.4604 0.4218 4.5664 23 7 6.7872 1.1022 3.5878 24 1 5.9587 1.5949 3.6953 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.5843 3.4694 0.8912 31 1 3.5849 3.4700 -0.8888 32 1 4.7668 5.5634 2.5277 33 1 7.9072 2.2048 0.7649 34 1 6.9898 0.7284 0.3815 35 1 9.3091 -0.7029 4.4846 36 1 7.1711 0.3313 5.6030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222878243.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:10 Heat of formation + Delta-G solvation = -98.505477 kcal Electronic energy + Delta-G solvation = -20783.259801 eV Core-core repulsion = 17461.025597 eV Total energy + Delta-G solvation = -3322.234203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.86624 -41.34539 -38.71031 -37.34093 -34.97513 -33.31388 -32.87572 -32.14942 -30.81373 -28.03379 -26.81994 -24.54815 -23.25953 -22.30468 -21.65223 -21.33157 -18.95986 -18.92594 -18.26641 -17.64865 -17.24385 -16.80496 -16.38271 -16.27857 -15.28480 -15.14769 -15.13071 -14.71078 -14.46136 -14.17148 -13.97997 -13.60958 -13.17838 -12.98999 -12.86832 -12.77046 -12.58766 -12.46718 -12.43229 -11.83355 -11.47415 -11.36147 -11.17581 -11.04843 -10.98130 -10.63868 -10.04570 -9.21608 -8.11607 -6.35054 1.19351 1.37952 1.42040 1.47536 1.56022 1.89193 2.16985 2.37409 2.42652 2.80451 3.24808 4.01287 4.01480 4.06462 4.15671 4.28046 4.35975 4.45722 4.56000 4.61391 4.65991 4.74181 4.76317 4.90907 4.93529 5.07156 5.15711 5.28219 5.44847 5.59301 5.76461 5.86180 6.10131 6.47990 6.55145 6.90274 6.97103 7.16833 7.44142 8.89470 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.008484 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.643750 B = 3299.515670 C = 5442.408950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.368 6.368 4 C 0.464 3.536 5 O -0.538 6.538 6 C -0.095 4.095 7 C 0.233 3.767 8 H 0.012 0.988 9 C -0.576 4.576 10 H 0.056 0.944 11 C 0.052 3.948 12 N -0.877 5.877 13 Si 0.947 3.053 14 H -0.272 1.272 15 H -0.273 1.273 16 H -0.288 1.288 17 O -0.380 6.380 18 C 0.162 3.838 19 C 0.203 3.797 20 N -0.528 5.528 21 C -0.053 4.053 22 C -0.053 4.053 23 N -0.546 5.546 24 H 0.428 0.572 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.198 0.802 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -6.498 2.475 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.286 6.286 4 C 0.310 3.690 5 O -0.428 6.428 6 C -0.133 4.133 7 C 0.177 3.823 8 H 0.031 0.969 9 C -0.613 4.613 10 H 0.075 0.925 11 C -0.153 4.153 12 N -0.513 5.513 13 Si 0.773 3.227 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.214 1.214 17 O -0.299 6.299 18 C 0.083 3.917 19 C -0.061 4.061 20 N -0.250 5.250 21 C -0.201 4.201 22 C -0.188 4.188 23 N -0.148 5.148 24 H 0.267 0.733 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.215 0.785 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.420 -6.954 2.225 9.093 hybrid contribution -0.242 1.171 0.381 1.255 sum -5.663 -5.783 2.606 8.503 Atomic orbital electron populations 1.21803 0.90059 1.04355 1.03674 1.23237 0.97360 0.79861 1.01947 1.86558 1.24583 1.33328 1.84128 1.24616 0.80164 0.93600 0.70640 1.90566 1.60980 1.44181 1.47040 1.21675 0.96418 0.88631 1.06573 1.19351 0.89237 0.91247 0.82499 0.96948 1.21706 1.32833 0.96676 1.10073 0.92546 1.25537 0.94126 1.01369 0.94264 1.69959 1.35277 1.34826 1.11240 0.85695 0.78532 0.80645 0.77806 1.19622 1.19835 1.21382 1.87801 1.37123 1.68909 1.36028 1.20071 0.89264 0.93746 0.88638 1.23054 0.91385 1.01471 0.90201 1.70063 1.19995 1.16469 1.18508 1.22863 1.00766 1.06529 0.89939 1.23452 0.96662 1.01999 0.96706 1.43299 1.22903 1.40022 1.08534 0.73276 0.91513 0.91087 0.87939 0.91596 0.92323 0.86064 0.87288 0.92598 0.92724 0.92797 0.78494 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 10.29 71.98 0.74 -1.95 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.37 -13.10 10.22 -51.48 -0.53 -13.63 16 4 C 0.46 19.27 7.84 71.23 0.56 19.83 16 5 O -0.54 -24.52 15.17 27.04 0.41 -24.11 16 6 C -0.10 -4.19 5.22 29.85 0.16 -4.03 16 7 C 0.23 11.28 1.82 29.85 0.05 11.33 16 8 H 0.01 0.61 7.60 -2.39 -0.02 0.59 16 9 C -0.58 -29.54 8.90 25.60 0.23 -29.31 16 10 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 11 C 0.05 2.61 5.24 84.66 0.44 3.05 16 12 N -0.88 -44.84 10.93 21.45 0.23 -44.61 16 13 Si 0.95 40.64 29.54 68.60 2.03 42.67 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 16 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 17 O -0.38 -18.44 8.10 -135.16 -1.10 -19.54 16 18 C 0.16 7.38 6.36 71.24 0.45 7.83 16 19 C 0.20 8.67 7.96 138.13 1.10 9.77 16 20 N -0.53 -21.69 11.25 -188.13 -2.12 -23.80 16 21 C -0.05 -1.72 11.87 83.52 0.99 -0.73 16 22 C -0.05 -1.57 12.04 83.09 1.00 -0.57 16 23 N -0.55 -20.14 5.99 -186.27 -1.12 -21.25 16 24 H 0.43 15.69 8.59 -92.71 -0.80 14.89 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 29 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.12 5.79 6.22 -2.39 -0.01 5.77 16 31 H 0.11 4.40 8.14 -2.39 -0.02 4.38 16 32 H 0.26 12.90 8.31 -92.70 -0.77 12.13 16 33 H 0.05 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.05 2.46 8.08 -2.39 -0.02 2.44 16 35 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 36 H 0.22 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -63.04 315.95 4.28 -58.76 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.30 Total: 28.47 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.17 Total: 17.04 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.00 Total: -89.66 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -1.21 Total: -57.28 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -63.04 4.28 -58.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222878243.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.746 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds