Wall clock time and date at job start Mon Mar 30 2020 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99923 * 2 1 4 4 C 1.38216 * 119.99462 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00599 * 0.02734 * 4 3 2 6 6 C 1.38217 * 119.99774 * 359.76248 * 5 4 3 7 7 C 1.38210 * 119.99679 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.00294 * 359.97433 * 7 2 1 9 9 H 1.09002 * 109.46959 * 35.00224 * 8 7 2 10 10 O 1.42903 * 109.47184 * 155.00480 * 8 7 2 11 11 C 1.34929 * 117.00028 * 210.00225 * 10 8 7 12 12 H 1.08002 * 119.99663 * 359.97438 * 11 10 8 13 13 C 1.38631 * 120.00399 * 179.97438 * 11 10 8 14 14 N 1.31587 * 119.99509 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00382 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47052 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.46987 * 119.99873 * 15 13 11 18 18 H 1.48502 * 109.47206 * 240.00114 * 15 13 11 19 19 C 1.50701 * 109.47269 * 275.00309 * 8 7 2 20 20 C 1.38242 * 119.99675 * 279.72800 * 19 8 7 21 21 C 1.38239 * 119.99559 * 179.78825 * 20 19 8 22 22 C 1.38237 * 119.99810 * 0.45690 * 21 20 19 23 23 C 1.38238 * 120.00230 * 359.77656 * 22 21 20 24 24 C 1.38230 * 119.99890 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.46824 * 269.97690 * 1 2 3 26 26 H 1.08999 * 109.46775 * 29.97458 * 1 2 3 27 27 H 1.09000 * 109.46988 * 149.98047 * 1 2 3 28 28 H 1.07997 * 120.00217 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.99608 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00246 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.00330 * 180.25743 * 6 5 4 32 32 H 0.97003 * 119.99709 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.00052 * 359.97438 * 20 19 8 34 34 H 1.07995 * 119.99674 * 180.25501 * 21 20 19 35 35 H 1.08007 * 119.99654 * 179.78842 * 22 21 20 36 36 H 1.08001 * 119.99793 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.99817 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0049 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5336 -2.3957 -0.5896 10 8 2.2637 -3.5250 -0.5704 11 6 1.6314 -4.5292 -1.2126 12 1 0.5534 -4.5345 -1.2775 13 6 2.3656 -5.5542 -1.7891 14 7 3.6790 -5.5479 -1.7096 15 14 1.4903 -6.9448 -2.6776 16 1 0.0234 -6.7195 -2.6257 17 1 1.9347 -6.9845 -4.0939 18 1 1.8169 -8.2355 -2.0199 19 6 1.0866 -2.8755 1.4149 20 6 2.0308 -3.4664 2.2336 21 6 1.7038 -3.8050 3.5334 22 6 0.4298 -3.5612 4.0114 23 6 -0.5158 -2.9747 3.1911 24 6 -0.1875 -2.6324 1.8927 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1326 0.0001 30 1 5.3518 0.0000 0.0005 31 1 4.1206 -2.1323 0.0091 32 1 4.1928 -6.2649 -2.1133 33 1 3.0248 -3.6609 1.8588 34 1 2.4426 -4.2629 4.1743 35 1 0.1733 -3.8288 5.0259 36 1 -1.5110 -2.7839 3.5648 37 1 -0.9264 -2.1746 1.2518 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:38 Heat of formation + Delta-G solvation = -4.147814 kcal Electronic energy + Delta-G solvation = -20036.496335 eV Core-core repulsion = 17129.203051 eV Total energy + Delta-G solvation = -2907.293285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03560 -39.56487 -37.99541 -34.53415 -33.72095 -32.59853 -31.70309 -31.22079 -28.08376 -27.05916 -26.07668 -23.37095 -23.06799 -22.44118 -21.14586 -19.64126 -17.94765 -17.67126 -17.02559 -16.46304 -16.12138 -15.84868 -15.60242 -15.21317 -14.97122 -14.75856 -14.42583 -14.17139 -13.92793 -13.51890 -13.47312 -13.14418 -13.11034 -12.93483 -12.85797 -12.45358 -12.14565 -11.98802 -11.91154 -11.71827 -11.48092 -11.09155 -10.21356 -9.74950 -9.69401 -9.54786 -9.37131 -8.17159 -5.85004 0.39561 0.53231 0.57165 0.65043 1.36061 1.41125 1.51365 2.30267 2.88654 2.97532 3.16667 3.56755 3.91952 4.05374 4.06619 4.14591 4.22688 4.28100 4.30674 4.35448 4.42844 4.66590 4.71497 4.75433 4.84377 4.87241 4.93370 5.00736 5.13577 5.19409 5.22344 5.24005 5.35729 5.60683 5.61798 5.66050 5.70079 5.81767 5.91928 6.18212 6.21569 6.22144 7.26076 8.04575 9.06978 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.007908 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.739900 B = 3540.055207 C = 4631.974299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.091 4.091 8 C 0.165 3.835 9 H 0.056 0.944 10 O -0.307 6.307 11 C -0.365 4.365 12 H 0.067 0.933 13 C -0.038 4.038 14 N -0.935 5.935 15 Si 0.996 3.004 16 H -0.258 1.258 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.099 4.099 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.126 4.126 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 11.783 8.386 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.157 4.157 6 C -0.131 4.131 7 C -0.091 4.091 8 C 0.106 3.894 9 H 0.074 0.926 10 O -0.222 6.222 11 C -0.444 4.444 12 H 0.084 0.916 13 C -0.231 4.231 14 N -0.580 5.580 15 Si 0.819 3.181 16 H -0.182 1.182 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.144 4.144 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.392 11.707 8.353 16.170 hybrid contribution 0.265 -1.267 -0.731 1.487 sum -7.127 10.440 7.623 14.761 Atomic orbital electron populations 1.20964 0.89770 1.03300 1.03127 1.19986 0.97426 0.91902 0.99718 1.21313 0.94472 0.97523 1.00803 1.21451 0.94642 0.98116 0.99388 1.21333 1.00578 0.92246 1.01509 1.20989 0.94530 0.98239 0.99309 1.19775 0.94114 0.93842 1.01347 1.19648 0.92675 0.86769 0.90276 0.92610 1.85648 1.32755 1.32945 1.70885 1.21281 0.90977 1.01155 1.31024 0.91574 1.26054 0.96368 1.00803 0.99908 1.70195 1.06236 1.34120 1.47483 0.84821 0.78252 0.77355 0.77663 1.18220 1.20153 1.20336 1.20524 0.94876 0.98573 0.95983 1.20917 0.99046 0.98622 0.94601 1.21350 0.98320 1.00635 0.94807 1.21448 0.92619 0.99182 1.01048 1.21447 1.00633 0.98637 0.93158 1.21264 0.94926 1.00996 0.97209 0.89861 0.89065 0.92543 0.82636 0.82783 0.84973 0.89123 0.93305 0.89538 0.85021 0.82965 0.82680 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.49 71.24 0.60 -2.36 16 2 C -0.09 -2.95 5.88 -19.86 -0.12 -3.07 16 3 C -0.12 -3.33 9.70 22.27 0.22 -3.11 16 4 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16 5 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 6 C -0.11 -4.88 9.35 22.27 0.21 -4.67 16 7 C -0.09 -3.79 5.04 -19.86 -0.10 -3.89 16 8 C 0.16 7.65 2.07 29.10 0.06 7.71 16 9 H 0.06 2.54 5.68 -2.39 -0.01 2.53 16 10 O -0.31 -18.04 7.59 -81.98 -0.62 -18.67 16 11 C -0.37 -21.97 9.77 67.91 0.66 -21.30 16 12 H 0.07 3.77 7.65 -2.91 -0.02 3.75 16 13 C -0.04 -2.30 5.49 84.82 0.47 -1.83 16 14 N -0.94 -60.39 13.68 21.61 0.30 -60.09 16 15 Si 1.00 46.42 29.55 68.60 2.03 48.45 16 16 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 C -0.10 -4.14 4.92 -19.86 -0.10 -4.24 16 20 C -0.11 -4.90 9.35 22.27 0.21 -4.70 16 21 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 22 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 23 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 24 C -0.13 -4.17 8.82 22.27 0.20 -3.98 16 25 H 0.08 1.91 7.51 -2.39 -0.02 1.89 16 26 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 27 H 0.06 1.60 5.68 -2.39 -0.01 1.59 16 28 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 31 H 0.09 4.65 7.36 -2.91 -0.02 4.62 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.09 4.33 7.77 -2.91 -0.02 4.30 16 34 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.13 3.80 6.75 -2.91 -0.02 3.79 16 Total: -1.00 -75.66 314.39 6.19 -69.47 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 1.06 Total: 24.44 kcal Atomic # 6 Polarization: -67.02 SS G_CDS: 3.43 Total: -63.60 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.30 Total: -60.09 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.62 Total: -18.67 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.66 6.19 -69.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.320 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds