Wall clock time and date at job start Mon Mar 30 2020 00:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47291 * 2 1 4 4 C 1.34227 * 117.00092 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99859 * 180.02562 * 4 3 2 7 7 C 1.53006 * 109.47182 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46661 * 54.99915 * 7 6 4 9 9 C 1.50698 * 109.46955 * 174.99875 * 7 6 4 10 10 H 1.08002 * 119.99961 * 240.00040 * 9 7 6 11 11 C 1.37880 * 120.00197 * 60.00351 * 9 7 6 12 12 N 1.31515 * 119.99510 * 359.97438 * 11 9 7 13 13 Si 1.86791 * 120.00140 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47526 * 89.99902 * 13 11 9 15 15 H 1.48497 * 109.47159 * 209.99867 * 13 11 9 16 16 H 1.48500 * 109.47289 * 329.99929 * 13 11 9 17 17 O 1.42903 * 109.46834 * 295.00087 * 7 6 4 18 18 C 1.35758 * 116.99483 * 155.46920 * 17 7 6 19 19 C 1.35945 * 126.19490 * 355.05879 * 18 17 7 20 20 C 1.39824 * 107.83727 * 180.02562 * 19 18 17 21 21 N 1.30831 * 108.27618 * 0.22830 * 20 19 18 22 22 N 1.35129 * 126.19233 * 175.08672 * 18 17 7 23 23 C 1.46498 * 126.03439 * 0.02562 * 22 18 17 24 24 H 1.09000 * 109.47040 * 299.99766 * 1 2 3 25 25 H 1.08995 * 109.47169 * 60.00057 * 1 2 3 26 26 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47040 * 240.00233 * 2 1 3 28 28 H 1.08991 * 109.47562 * 120.00230 * 2 1 3 29 29 H 1.09005 * 109.47268 * 59.99508 * 6 4 3 30 30 H 1.08998 * 109.47296 * 299.99695 * 6 4 3 31 31 H 0.97000 * 119.99562 * 179.97438 * 12 11 9 32 32 H 1.07999 * 126.08349 * 0.04716 * 19 18 17 33 33 H 1.07997 * 125.85949 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.47557 * 94.90779 * 23 22 18 35 35 H 1.09003 * 109.47074 * 214.90081 * 23 22 18 36 36 H 1.08997 * 109.47561 * 334.89810 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4487 2.8573 -0.0001 8 1 5.7806 2.2500 -0.8423 9 6 6.0243 4.2446 -0.1234 10 1 6.6591 4.4933 -0.9611 11 6 5.7408 5.1962 0.8332 12 7 4.9675 4.8933 1.8529 13 14 6.4549 6.9155 0.6807 14 1 5.5207 7.7729 -0.0924 15 1 6.6503 7.4923 2.0350 16 1 7.7614 6.8484 -0.0219 17 8 5.8946 2.2633 1.2207 18 6 7.1073 1.6533 1.2022 19 6 7.8977 1.4710 0.1113 20 6 9.0535 0.8026 0.5267 21 7 8.9621 0.5860 1.8137 22 7 7.7470 1.1170 2.2648 23 6 7.2538 1.0900 3.6440 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5851 3.4691 0.8905 30 1 3.5844 3.4700 -0.8895 31 1 4.7683 5.5627 2.5261 32 1 7.6731 1.7866 -0.8968 33 1 9.8780 0.5111 -0.1070 34 1 6.7497 0.1419 3.8312 35 1 8.0925 1.1975 4.3320 36 1 6.5524 1.9105 3.7953 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226396594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:01 Heat of formation + Delta-G solvation = -64.201308 kcal Electronic energy + Delta-G solvation = -21089.397809 eV Core-core repulsion = 17768.651146 eV Total energy + Delta-G solvation = -3320.746663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01850 -41.38285 -38.97536 -37.46226 -35.15184 -33.96517 -32.89799 -31.97369 -29.75155 -28.22479 -27.49033 -24.84189 -23.61052 -22.15002 -21.67518 -21.11393 -19.19245 -18.81726 -18.00415 -17.58684 -17.23037 -16.79021 -16.41016 -16.12486 -15.45049 -15.16744 -14.97212 -14.46052 -14.33641 -13.88002 -13.70068 -13.54769 -13.37087 -13.19288 -13.08143 -12.88181 -12.81491 -12.60212 -12.46729 -12.29472 -11.58986 -11.49869 -11.48375 -11.28691 -11.13173 -10.71335 -9.81717 -8.91482 -8.21485 -6.47313 1.21490 1.30073 1.37786 1.44804 1.47664 1.53759 1.82772 2.11361 2.37783 2.85744 3.23533 3.81835 3.94059 4.00317 4.12937 4.33573 4.34776 4.39685 4.47792 4.54587 4.62790 4.70024 4.78330 4.87965 4.92897 4.98602 5.13164 5.18777 5.36380 5.51478 5.67398 5.86452 5.93296 5.99492 6.53306 6.75142 6.87304 7.12366 7.34478 8.79029 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.008234 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.170476 B = 3399.617039 C = 4949.852148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.095 4.095 7 C 0.238 3.762 8 H 0.028 0.972 9 C -0.570 4.570 10 H 0.065 0.935 11 C 0.048 3.952 12 N -0.879 5.879 13 Si 0.954 3.046 14 H -0.263 1.263 15 H -0.285 1.285 16 H -0.276 1.276 17 O -0.307 6.307 18 C 0.310 3.690 19 C -0.379 4.379 20 C 0.075 3.925 21 N -0.335 5.335 22 N -0.396 5.396 23 C 0.108 3.892 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.269 0.731 32 H 0.139 0.861 33 H 0.218 0.782 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -5.391 -1.410 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.429 6.429 6 C -0.133 4.133 7 C 0.183 3.817 8 H 0.046 0.954 9 C -0.607 4.607 10 H 0.083 0.917 11 C -0.157 4.157 12 N -0.515 5.515 13 Si 0.779 3.221 14 H -0.187 1.187 15 H -0.211 1.211 16 H -0.201 1.201 17 O -0.213 6.213 18 C 0.137 3.863 19 C -0.409 4.409 20 C -0.110 4.110 21 N -0.160 5.160 22 N -0.190 5.190 23 C -0.032 4.032 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.079 0.921 32 H 0.157 0.843 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.806 -6.058 0.041 7.733 hybrid contribution 0.015 1.133 -0.754 1.361 sum -4.791 -4.925 -0.713 6.908 Atomic orbital electron populations 1.21807 0.89878 1.04424 1.03744 1.23271 0.97472 0.79709 1.02017 1.86545 1.24221 1.33484 1.84018 1.24560 0.80377 0.93496 0.70740 1.90602 1.61059 1.44232 1.47053 1.21667 0.95075 0.89065 1.07447 1.19806 0.89650 0.91609 0.80595 0.95382 1.21610 1.32900 0.95587 1.10576 0.91723 1.25662 0.93931 1.02043 0.94053 1.69953 1.34930 1.35414 1.11207 0.85623 0.79116 0.79859 0.77487 1.18747 1.21090 1.20051 1.85952 1.27399 1.66666 1.41302 1.19391 0.87283 0.90796 0.88781 1.21050 0.99941 1.20777 0.99167 1.23986 0.98400 0.96202 0.92404 1.77218 0.99552 1.25481 1.13754 1.48445 1.14917 1.48130 1.07484 1.21827 1.00575 1.03252 0.77590 0.91482 0.90970 0.87875 0.91484 0.92340 0.85764 0.85835 0.92128 0.84312 0.76603 0.90427 0.88038 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.29 71.98 0.74 -1.93 16 2 C 0.05 1.36 6.19 71.98 0.45 1.80 16 3 O -0.37 -13.01 10.22 -51.39 -0.53 -13.53 16 4 C 0.46 19.44 7.84 71.24 0.56 20.00 16 5 O -0.54 -25.32 15.17 27.04 0.41 -24.91 16 6 C -0.09 -4.18 5.22 29.85 0.16 -4.02 16 7 C 0.24 11.69 1.52 29.85 0.05 11.74 16 8 H 0.03 1.40 6.30 -2.38 -0.02 1.38 16 9 C -0.57 -29.19 8.80 25.60 0.23 -28.97 16 10 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 11 C 0.05 2.44 5.24 84.66 0.44 2.88 16 12 N -0.88 -45.42 10.93 21.45 0.23 -45.19 16 13 Si 0.95 40.45 29.54 68.60 2.03 42.47 16 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 15 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 O -0.31 -15.88 8.35 -77.03 -0.64 -16.53 16 18 C 0.31 15.18 7.60 83.65 0.64 15.81 16 19 C -0.38 -17.12 9.73 22.12 0.22 -16.90 16 20 C 0.08 2.90 12.02 85.23 1.02 3.92 16 21 N -0.34 -14.01 12.57 -57.06 -0.72 -14.73 16 22 N -0.40 -17.56 4.02 -481.27 -1.93 -19.49 16 23 C 0.11 3.84 11.44 127.77 1.46 5.31 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 28 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.12 5.94 6.22 -2.38 -0.01 5.92 16 30 H 0.12 4.85 8.14 -2.39 -0.02 4.83 16 31 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 32 H 0.14 6.16 6.96 -2.91 -0.02 6.14 16 33 H 0.22 6.05 8.06 -2.91 -0.02 6.03 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.08 2.92 8.04 -2.39 -0.02 2.90 16 Total: -1.00 -64.79 314.81 5.88 -58.91 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 1.08 Total: 23.35 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 5.95 Total: 9.65 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.42 Total: -79.41 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.76 Total: -54.97 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -64.79 5.88 -58.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226396594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.294 kcal (2) G-P(sol) polarization free energy of solvation -64.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds