Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35599 * 117.00089 * 2 1 4 4 C 1.39151 * 119.88598 * 359.97438 * 3 2 1 5 5 C 1.36406 * 120.43730 * 180.25816 * 4 3 2 6 6 C 1.40909 * 120.18849 * 359.49498 * 5 4 3 7 7 C 1.41249 * 120.11994 * 180.25819 * 6 5 4 8 8 H 1.08006 * 119.99523 * 330.35286 * 7 6 5 9 9 C 1.39856 * 120.00342 * 150.35261 * 7 6 5 10 10 N 1.30895 * 120.00193 * 161.71656 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 341.71942 * 9 7 6 12 12 H 1.48502 * 109.47372 * 95.41152 * 11 9 7 13 13 H 1.48494 * 109.47089 * 215.41288 * 11 9 7 14 14 H 1.48499 * 109.46990 * 335.41296 * 11 9 7 15 15 C 1.40618 * 119.76486 * 0.47896 * 6 5 4 16 16 C 1.38593 * 119.56811 * 359.77879 * 15 6 5 17 17 C 1.48339 * 120.09603 * 180.02562 * 16 15 6 18 18 C 1.39364 * 120.12020 * 129.70461 * 17 16 15 19 19 C 1.38014 * 119.87033 * 179.72640 * 18 17 16 20 20 C 1.38326 * 120.12466 * 0.56888 * 19 18 17 21 21 C 1.50700 * 119.87592 * 179.70589 * 20 19 18 22 22 C 1.38329 * 120.24746 * 359.67818 * 20 19 18 23 23 C 1.38009 * 120.12279 * 0.04983 * 22 20 19 24 24 H 1.09004 * 109.46933 * 60.00496 * 1 2 3 25 25 H 1.09001 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47382 * 300.00212 * 1 2 3 27 27 H 1.08001 * 119.77780 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.90620 * 179.74749 * 5 4 3 29 29 H 0.97003 * 120.00222 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.21241 * 179.75211 * 15 6 5 31 31 H 1.08006 * 120.06693 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.93716 * 180.27984 * 19 18 17 33 33 H 1.09000 * 109.46826 * 269.97764 * 21 20 19 34 34 H 1.08996 * 109.47107 * 29.97697 * 21 20 19 35 35 H 1.09003 * 109.47238 * 149.97812 * 21 20 19 36 36 H 1.08001 * 119.93562 * 180.02562 * 22 20 19 37 37 H 1.08006 * 120.05895 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2845 2.3737 -0.0005 5 6 1.8920 3.5950 -0.0058 6 6 3.2981 3.6869 -0.0001 7 6 3.9257 4.9523 -0.0001 8 1 3.4393 5.7963 -0.4666 9 6 5.1769 5.1124 0.6040 10 7 5.9175 6.1509 0.3100 11 14 5.7911 3.8443 1.8303 12 1 6.6582 2.8607 1.1330 13 1 6.5709 4.5235 2.8960 14 1 4.6326 3.1405 2.4367 15 6 4.0743 2.5144 0.0009 16 6 3.4467 1.2787 0.0009 17 6 4.2542 0.0343 0.0026 18 6 3.9877 -0.9710 0.9303 19 6 4.7385 -2.1290 0.9235 20 6 5.7614 -2.2880 0.0060 21 6 6.5819 -3.5520 0.0079 22 6 6.0335 -1.2912 -0.9138 23 6 5.2856 -0.1314 -0.9198 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2063 2.3109 -0.0014 28 1 1.2936 4.4941 -0.0103 29 1 6.7855 6.2617 0.7287 30 1 5.1525 2.5764 0.0013 31 1 3.1927 -0.8458 1.6505 32 1 4.5300 -2.9107 1.6391 33 1 7.4395 -3.4274 0.6691 34 1 5.9695 -4.3822 0.3598 35 1 6.9302 -3.7607 -1.0036 36 1 6.8330 -1.4208 -1.6282 37 1 5.4992 0.6464 -1.6381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239479334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -5.083082 kcal Electronic energy + Delta-G solvation = -19707.873567 eV Core-core repulsion = 16800.539726 eV Total energy + Delta-G solvation = -2907.333841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.47730 -38.36855 -36.55640 -33.60241 -32.87577 -30.56127 -29.89605 -29.83814 -27.05478 -25.98217 -24.52435 -22.36160 -21.80217 -20.88608 -19.81668 -17.49767 -17.26900 -15.73279 -15.35724 -15.07464 -14.96843 -14.74429 -14.51815 -13.66133 -13.58190 -13.13271 -13.02702 -12.92658 -12.60039 -12.43089 -12.23375 -11.85657 -11.61568 -11.46077 -11.07195 -11.05160 -10.77144 -10.63436 -10.26377 -10.14976 -9.94713 -9.56905 -9.08684 -8.51858 -8.47732 -7.61048 -7.10954 -6.92240 -4.40659 1.56948 1.84166 2.54828 2.58812 3.14294 3.21305 3.33664 3.99911 4.11291 4.19777 4.46860 5.10538 5.14807 5.29299 5.35200 5.47069 5.51146 5.55229 5.58873 5.66483 5.73661 5.87265 5.89161 5.92441 6.07385 6.18806 6.41530 6.45212 6.54122 6.70056 6.78432 6.88263 6.92760 7.03127 7.25143 7.31615 7.38302 7.51735 7.75214 7.87641 8.25854 8.36740 8.63815 8.80611 10.10621 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.007829 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.846266 B = 3575.801668 C = 5009.689328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.011 3.989 4 C -0.159 4.159 5 C -0.169 4.169 6 C 0.071 3.929 7 C -0.450 4.450 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.812 5.812 11 Si 0.901 3.099 12 H -0.268 1.268 13 H -0.290 1.290 14 H -0.244 1.244 15 C -0.193 4.193 16 C -0.042 4.042 17 C -0.018 4.018 18 C -0.093 4.093 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.109 4.109 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.284 0.716 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -13.500 0.708 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.237 6.237 3 C -0.033 4.033 4 C -0.178 4.178 5 C -0.188 4.188 6 C 0.068 3.932 7 C -0.478 4.478 8 H 0.109 0.891 9 C -0.132 4.132 10 N -0.437 5.437 11 Si 0.727 3.273 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.167 1.167 15 C -0.212 4.212 16 C -0.042 4.042 17 C -0.018 4.018 18 C -0.111 4.111 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.165 4.165 22 C -0.142 4.142 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.987 -13.479 0.715 13.644 hybrid contribution 0.083 -0.095 0.502 0.518 sum -1.904 -13.574 1.217 13.761 Atomic orbital electron populations 1.22759 0.80846 1.01995 1.00412 1.85890 1.19110 1.27886 1.90815 1.18463 0.90610 0.83338 1.10865 1.20500 0.97881 0.92746 1.06624 1.20691 0.94512 0.95512 1.08133 1.17635 0.91537 0.92827 0.91198 1.19341 1.00991 0.95481 1.32037 0.89147 1.26069 0.95134 0.95778 0.96243 1.69721 1.09924 1.28107 1.35916 0.86458 0.80162 0.80330 0.80338 1.19388 1.21717 1.16747 1.20979 0.98304 0.90759 1.11150 1.17754 0.89119 0.91877 1.05480 1.18878 0.94559 0.93642 0.94743 1.21175 0.98804 0.92821 0.98291 1.20862 0.96508 0.97777 0.99193 1.19823 0.97441 0.96393 0.96846 1.20722 0.99049 0.94676 1.02031 1.20865 1.00084 0.93925 0.99332 1.21292 0.95272 0.97419 0.98720 0.93805 0.89836 0.93797 0.87779 0.87710 0.90550 0.87187 0.86106 0.86680 0.91707 0.92007 0.91977 0.86550 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 9.80 101.05 0.99 1.50 16 2 O -0.32 -6.11 8.84 -18.49 -0.16 -6.28 16 3 C 0.01 0.23 6.63 -38.43 -0.25 -0.02 16 4 C -0.16 -3.30 8.95 -39.90 -0.36 -3.66 16 5 C -0.17 -3.86 9.72 -39.23 -0.38 -4.24 16 6 C 0.07 1.78 5.10 -106.84 -0.55 1.24 16 7 C -0.45 -12.09 9.55 -37.83 -0.36 -12.45 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 9 C 0.09 2.26 5.40 -17.35 -0.09 2.17 16 10 N -0.81 -21.76 13.93 55.54 0.77 -20.98 16 11 Si 0.90 21.18 24.52 -169.99 -4.17 17.01 16 12 H -0.27 -6.20 6.70 56.52 0.38 -5.82 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.24 -5.91 6.87 56.52 0.39 -5.52 16 15 C -0.19 -4.69 6.61 -38.55 -0.26 -4.94 16 16 C -0.04 -0.94 5.48 -104.80 -0.57 -1.51 16 17 C -0.02 -0.37 5.26 -104.90 -0.55 -0.92 16 18 C -0.09 -1.69 8.78 -39.24 -0.34 -2.04 16 19 C -0.13 -1.95 9.68 -39.63 -0.38 -2.33 16 20 C -0.11 -1.55 5.88 -104.56 -0.62 -2.17 16 21 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 22 C -0.12 -1.97 9.68 -39.63 -0.38 -2.35 16 23 C -0.11 -2.03 9.51 -39.25 -0.37 -2.41 16 24 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.58 7.65 -51.93 -0.40 0.19 16 27 H 0.10 1.83 6.26 -52.49 -0.33 1.50 16 28 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 29 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 30 H 0.11 2.71 4.71 -52.49 -0.25 2.46 16 31 H 0.12 2.17 7.71 -52.48 -0.40 1.76 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.59 8.08 -51.93 -0.42 0.18 16 35 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.24 8.04 -52.48 -0.42 1.82 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -28.56 309.01 -7.77 -36.33 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.74 Total: 4.21 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: -4.12 Total: -34.95 kcal Atomic # 7 Polarization: -21.76 SS G_CDS: 0.77 Total: -20.98 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.16 Total: -6.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.56 -7.77 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239479334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.248 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds