Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38348 * 119.93980 * 2 1 4 4 C 1.38297 * 120.24722 * 179.97438 * 3 2 1 5 5 C 1.38035 * 120.12557 * 0.02562 * 4 3 2 6 6 C 1.39331 * 119.87430 * 359.97438 * 5 4 3 7 7 C 1.48356 * 120.12138 * 179.97438 * 6 5 4 8 8 C 1.39377 * 120.06508 * 179.72000 * 7 6 5 9 9 C 1.37907 * 119.93554 * 179.74528 * 8 7 6 10 10 C 1.38837 * 120.06531 * 0.55696 * 9 8 7 11 11 O 1.35874 * 119.93596 * 179.71752 * 10 9 8 12 12 C 1.42892 * 117.00155 * 359.97438 * 11 10 9 13 13 C 1.50701 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99934 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00487 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46959 * 90.00043 * 17 15 13 19 19 H 1.48496 * 109.47474 * 210.00128 * 17 15 13 20 20 H 1.48496 * 109.47325 * 330.00525 * 17 15 13 21 21 C 1.38837 * 120.12983 * 359.70086 * 10 9 8 22 22 C 1.37910 * 120.06035 * 0.02562 * 21 10 9 23 23 C 1.37996 * 119.93859 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46894 * 269.99357 * 1 2 3 25 25 H 1.09000 * 109.47681 * 29.99161 * 1 2 3 26 26 H 1.08997 * 109.47371 * 149.99512 * 1 2 3 27 27 H 1.07999 * 119.87481 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.93256 * 180.28436 * 4 3 2 29 29 H 1.08000 * 120.05821 * 180.02562 * 5 4 3 30 30 H 1.08003 * 120.03361 * 0.02743 * 8 7 6 31 31 H 1.07996 * 119.97261 * 180.27696 * 9 8 7 32 32 H 1.09010 * 109.46737 * 299.99342 * 12 11 10 33 33 H 1.08999 * 109.47777 * 59.99342 * 12 11 10 34 34 H 0.96996 * 120.00138 * 179.97438 * 16 15 13 35 35 H 1.07996 * 119.97061 * 180.02562 * 21 10 9 36 36 H 1.08003 * 120.02670 * 180.02562 * 22 21 10 37 37 H 1.07996 * 120.06344 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1989 0.0000 4 6 3.5804 1.2063 0.0005 5 6 4.2796 0.0161 0.0005 6 6 3.5894 -1.1943 0.0005 7 6 4.3353 -2.4766 0.0000 8 6 3.6438 -3.6867 0.0059 9 6 4.3398 -4.8772 0.0000 10 6 5.7282 -4.8712 -0.0001 11 8 6.4113 -6.0457 -0.0001 12 6 5.6370 -7.2466 0.0006 13 6 6.5588 -8.4388 -0.0001 14 1 7.6290 -8.2938 -0.0014 15 6 6.0360 -9.7145 0.0009 16 7 4.7327 -9.8911 0.0020 17 14 7.1787 -11.1923 -0.0007 18 1 7.4837 -11.5837 1.3990 19 1 6.5213 -12.3257 -0.6995 20 1 8.4396 -10.8423 -0.7026 21 6 6.4199 -3.6674 -0.0005 22 6 5.7291 -2.4738 -0.0004 23 6 2.1956 -1.1958 -0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6544 2.1324 0.0004 28 1 4.1143 2.1451 0.0052 29 1 5.3595 0.0232 0.0014 30 1 2.5637 -3.6921 0.0104 31 1 3.8045 -5.8152 0.0001 32 1 5.0087 -7.2733 0.8911 33 1 5.0077 -7.2738 -0.8890 34 1 4.3649 -10.7887 0.0023 35 1 7.4998 -3.6657 -0.0010 36 1 6.2677 -1.5376 -0.0011 37 1 1.6557 -2.1311 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239491031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -6.150733 kcal Electronic energy + Delta-G solvation = -18518.158105 eV Core-core repulsion = 15610.777967 eV Total energy + Delta-G solvation = -2907.380138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.90810 -38.88805 -36.69518 -33.18283 -32.84868 -31.80746 -30.66040 -28.61701 -27.26350 -26.91021 -23.63514 -23.25432 -21.95361 -21.11759 -20.02971 -17.74495 -16.70136 -16.39420 -15.75133 -15.48301 -14.83358 -14.66041 -14.30082 -14.02287 -13.92470 -13.86765 -13.52443 -12.87946 -12.67907 -12.65313 -12.33648 -12.03716 -11.80152 -11.69816 -11.15588 -11.07080 -11.03105 -10.90680 -10.45536 -10.31404 -10.15740 -9.31462 -9.03754 -8.76036 -8.69187 -8.55038 -7.23228 -6.27950 -4.31929 0.91477 1.35419 1.72645 2.18916 3.22346 3.27598 3.32389 3.72293 4.11712 4.32040 4.47759 4.67016 4.74835 4.80727 5.03292 5.09346 5.18635 5.25697 5.28992 5.38356 5.44301 5.49920 5.67689 5.68713 5.84231 5.96740 6.05690 6.06663 6.32992 6.39288 6.45251 6.52189 6.66611 6.72112 6.93539 6.96392 7.00061 7.09997 7.20926 7.64787 7.91498 8.41490 8.80316 9.33501 10.83279 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.041109 B = 0.003186 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.958037 B = 8786.436949 C = 9446.947163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.112 4.112 5 C -0.129 4.129 6 C -0.012 4.012 7 C -0.119 4.119 8 C -0.063 4.063 9 C -0.212 4.212 10 C 0.162 3.838 11 O -0.315 6.315 12 C 0.191 3.809 13 C -0.525 4.525 14 H 0.071 0.929 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.914 3.086 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.170 4.170 22 C -0.068 4.068 23 C -0.123 4.123 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 19.679 0.023 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.130 4.130 5 C -0.146 4.146 6 C -0.012 4.012 7 C -0.120 4.120 8 C -0.081 4.081 9 C -0.231 4.231 10 C 0.114 3.886 11 O -0.227 6.227 12 C 0.119 3.881 13 C -0.563 4.563 14 H 0.089 0.911 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.740 3.260 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.188 4.188 22 C -0.086 4.086 23 C -0.141 4.141 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.694 19.459 0.017 20.275 hybrid contribution 0.211 -0.952 0.018 0.975 sum -5.483 18.508 0.035 19.303 Atomic orbital electron populations 1.20792 0.91332 1.02693 1.02274 1.19825 0.95937 0.93069 0.99473 1.20982 0.94275 0.97252 1.02829 1.21019 0.94209 0.97777 1.00009 1.21201 0.99932 0.91707 1.01803 1.18796 0.92759 0.92298 0.97381 1.18487 0.92956 0.91656 1.08872 1.20960 0.99299 0.91127 0.96695 1.21421 0.93772 0.99470 1.08448 1.19418 0.90607 0.87613 0.91011 1.86124 1.37993 1.13114 1.85447 1.20687 0.92204 0.78236 0.96978 1.20974 0.93977 0.89034 1.52346 0.91102 1.24939 0.95564 0.99066 0.94620 1.69945 1.10818 1.22990 1.49481 0.86237 0.80377 0.80937 0.78411 1.20255 1.20876 1.19472 1.20365 1.00212 0.89841 1.08430 1.20881 0.92929 0.97127 0.97623 1.21125 0.93385 0.97714 1.01836 0.91231 0.91690 0.91495 0.86484 0.86214 0.85876 0.86106 0.84606 0.95955 0.95943 0.92287 0.85380 0.85805 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.08 -0.90 5.87 -104.67 -0.61 -1.52 16 3 C -0.14 -1.38 9.69 -39.52 -0.38 -1.76 16 4 C -0.11 -1.16 10.03 -39.63 -0.40 -1.56 16 5 C -0.13 -1.52 9.43 -39.25 -0.37 -1.89 16 6 C -0.01 -0.17 5.88 -104.90 -0.62 -0.78 16 7 C -0.12 -1.82 5.88 -104.88 -0.62 -2.44 16 8 C -0.06 -1.01 9.42 -39.28 -0.37 -1.38 16 9 C -0.21 -4.04 9.02 -39.48 -0.36 -4.40 16 10 C 0.16 3.32 6.69 -39.14 -0.26 3.06 16 11 O -0.31 -7.62 10.12 -19.34 -0.20 -7.81 16 12 C 0.19 5.07 4.49 36.01 0.16 5.23 16 13 C -0.53 -14.97 9.43 -34.44 -0.32 -15.29 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 17 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C -0.17 -2.93 9.97 -39.48 -0.39 -3.32 16 22 C -0.07 -1.01 9.42 -39.28 -0.37 -1.38 16 23 C -0.12 -1.52 9.08 -39.25 -0.36 -1.88 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.12 1.26 6.20 -52.49 -0.33 0.93 16 30 H 0.12 1.66 6.20 -52.48 -0.33 1.33 16 31 H 0.14 2.70 6.28 -52.49 -0.33 2.37 16 32 H 0.02 0.61 7.66 -51.92 -0.40 0.22 16 33 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.12 1.46 6.20 -52.48 -0.33 1.14 16 37 H 0.12 1.42 6.20 -52.49 -0.33 1.09 16 LS Contribution 315.03 15.07 4.75 4.75 Total: -1.00 -30.09 315.03 -9.24 -39.33 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.50 Total: 0.89 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -5.01 Total: -28.29 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.20 Total: -7.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.09 -9.24 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239491031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.182 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds