Wall clock time and date at job start Mon Mar 30 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38348 * 119.93980 * 2 1 4 4 C 1.38297 * 120.24722 * 179.97438 * 3 2 1 5 5 C 1.38035 * 120.12557 * 0.02562 * 4 3 2 6 6 C 1.39331 * 119.87430 * 359.97438 * 5 4 3 7 7 C 1.48356 * 120.12138 * 179.97438 * 6 5 4 8 8 C 1.39377 * 120.06508 * 179.72000 * 7 6 5 9 9 C 1.37907 * 119.93554 * 179.74528 * 8 7 6 10 10 C 1.38837 * 120.06531 * 0.55696 * 9 8 7 11 11 O 1.35874 * 119.93596 * 179.71752 * 10 9 8 12 12 C 1.42892 * 117.00155 * 359.97438 * 11 10 9 13 13 C 1.50701 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99934 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00487 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99911 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46959 * 90.00043 * 17 15 13 19 19 H 1.48496 * 109.47474 * 210.00128 * 17 15 13 20 20 H 1.48496 * 109.47325 * 330.00525 * 17 15 13 21 21 C 1.38837 * 120.12983 * 359.70086 * 10 9 8 22 22 C 1.37910 * 120.06035 * 0.02562 * 21 10 9 23 23 C 1.37996 * 119.93859 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46894 * 269.99357 * 1 2 3 25 25 H 1.09000 * 109.47681 * 29.99161 * 1 2 3 26 26 H 1.08997 * 109.47371 * 149.99512 * 1 2 3 27 27 H 1.07999 * 119.87481 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.93256 * 180.28436 * 4 3 2 29 29 H 1.08000 * 120.05821 * 180.02562 * 5 4 3 30 30 H 1.08003 * 120.03361 * 0.02743 * 8 7 6 31 31 H 1.07996 * 119.97261 * 180.27696 * 9 8 7 32 32 H 1.09010 * 109.46737 * 299.99342 * 12 11 10 33 33 H 1.08999 * 109.47777 * 59.99342 * 12 11 10 34 34 H 0.96996 * 120.00138 * 179.97438 * 16 15 13 35 35 H 1.07996 * 119.97061 * 180.02562 * 21 10 9 36 36 H 1.08003 * 120.02670 * 180.02562 * 22 21 10 37 37 H 1.07996 * 120.06344 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1989 0.0000 4 6 3.5804 1.2063 0.0005 5 6 4.2796 0.0161 0.0005 6 6 3.5894 -1.1943 0.0005 7 6 4.3353 -2.4766 0.0000 8 6 3.6438 -3.6867 0.0059 9 6 4.3398 -4.8772 0.0000 10 6 5.7282 -4.8712 -0.0001 11 8 6.4113 -6.0457 -0.0001 12 6 5.6370 -7.2466 0.0006 13 6 6.5588 -8.4388 -0.0001 14 1 7.6290 -8.2938 -0.0014 15 6 6.0360 -9.7145 0.0009 16 7 4.7327 -9.8911 0.0020 17 14 7.1787 -11.1923 -0.0007 18 1 7.4837 -11.5837 1.3990 19 1 6.5213 -12.3257 -0.6995 20 1 8.4396 -10.8423 -0.7026 21 6 6.4199 -3.6674 -0.0005 22 6 5.7291 -2.4738 -0.0004 23 6 2.1956 -1.1958 -0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6544 2.1324 0.0004 28 1 4.1143 2.1451 0.0052 29 1 5.3595 0.0232 0.0014 30 1 2.5637 -3.6921 0.0104 31 1 3.8045 -5.8152 0.0001 32 1 5.0087 -7.2733 0.8911 33 1 5.0077 -7.2738 -0.8890 34 1 4.3649 -10.7887 0.0023 35 1 7.4998 -3.6657 -0.0010 36 1 6.2677 -1.5376 -0.0011 37 1 1.6557 -2.1311 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239491031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:54 Heat of formation + Delta-G solvation = -20.940789 kcal Electronic energy + Delta-G solvation = -18518.799450 eV Core-core repulsion = 15610.777967 eV Total energy + Delta-G solvation = -2908.021483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16572 -40.09953 -38.16437 -35.12081 -33.92942 -32.89159 -31.95231 -30.24718 -28.87555 -27.71556 -25.47724 -24.37565 -23.34671 -22.21494 -21.18567 -19.31462 -18.57018 -17.62924 -16.97019 -16.83450 -16.51705 -16.36568 -15.67249 -15.18964 -14.94091 -14.68992 -14.68397 -14.43971 -13.87921 -13.78563 -13.67370 -13.15244 -13.08232 -12.97921 -12.83781 -12.73256 -12.39496 -12.07193 -11.98670 -11.89332 -11.60362 -11.31684 -10.76058 -10.12348 -10.00587 -9.59351 -8.57678 -8.41729 -6.56496 -0.18190 0.36687 0.51442 1.00925 1.38145 1.41108 1.53188 2.25383 2.65596 2.70435 2.92951 3.13684 3.67015 3.74662 3.89225 4.04340 4.12381 4.24980 4.32873 4.41988 4.47320 4.51956 4.65621 4.79058 4.82443 4.85076 4.93157 4.95620 5.02423 5.13203 5.26608 5.32213 5.37407 5.39570 5.51506 5.60871 5.71195 5.80392 5.82435 5.86453 6.15031 6.47440 6.75538 7.15696 8.70608 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.041109 B = 0.003186 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.958037 B = 8786.436949 C = 9446.947163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.114 4.114 5 C -0.132 4.132 6 C -0.043 4.043 7 C -0.102 4.102 8 C -0.069 4.069 9 C -0.225 4.225 10 C 0.112 3.888 11 O -0.336 6.336 12 C 0.211 3.789 13 C -0.559 4.559 14 H 0.067 0.933 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.989 3.011 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.263 1.263 21 C -0.165 4.165 22 C -0.063 4.063 23 C -0.136 4.136 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.113 0.887 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.274 0.726 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 22.245 0.033 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.132 4.132 5 C -0.150 4.150 6 C -0.043 4.043 7 C -0.103 4.103 8 C -0.087 4.087 9 C -0.243 4.243 10 C 0.066 3.934 11 O -0.249 6.249 12 C 0.138 3.862 13 C -0.597 4.597 14 H 0.086 0.914 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.811 3.189 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.187 1.187 21 C -0.184 4.184 22 C -0.080 4.080 23 C -0.154 4.154 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.131 0.869 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.636 22.060 0.029 22.769 hybrid contribution 0.027 -1.427 0.015 1.427 sum -5.609 20.634 0.044 21.383 Atomic orbital electron populations 1.20842 0.89598 1.03573 1.03038 1.20160 0.97382 0.92786 0.98908 1.21413 0.94611 0.98056 1.00801 1.21394 0.94524 0.98412 0.98878 1.21455 1.00909 0.91512 1.01097 1.18806 0.93266 0.91896 1.00330 1.18836 0.93452 0.92247 1.05728 1.21159 1.00381 0.90555 0.96626 1.21343 0.93550 0.99801 1.09649 1.19819 0.91459 0.87289 0.94833 1.86034 1.38135 1.13555 1.87214 1.20192 0.91624 0.79486 0.94891 1.21329 0.94120 0.90447 1.53758 0.91444 1.25986 0.97363 1.02116 0.93378 1.70055 1.12713 1.24177 1.49441 0.85094 0.78157 0.76640 0.79007 1.19086 1.19675 1.18725 1.20623 1.01057 0.89267 1.07407 1.21280 0.92962 0.97646 0.96111 1.21295 0.93309 0.98658 1.02121 0.90444 0.90019 0.91499 0.83790 0.83329 0.84327 0.84132 0.86890 0.98093 0.98086 0.91670 0.83977 0.81897 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.23 0.71 -0.85 16 2 C -0.09 -1.76 5.87 -19.90 -0.12 -1.88 16 3 C -0.13 -2.16 9.69 22.31 0.22 -1.95 16 4 C -0.11 -1.91 10.03 22.24 0.22 -1.68 16 5 C -0.13 -2.69 9.43 22.48 0.21 -2.48 16 6 C -0.04 -1.08 5.88 -20.05 -0.12 -1.20 16 7 C -0.10 -3.03 5.88 -20.03 -0.12 -3.15 16 8 C -0.07 -2.30 9.42 22.47 0.21 -2.09 16 9 C -0.22 -9.19 9.02 22.33 0.20 -8.98 16 10 C 0.11 4.87 6.69 22.56 0.15 5.03 16 11 O -0.34 -17.40 10.12 -92.13 -0.93 -18.34 16 12 C 0.21 12.07 4.49 71.24 0.32 12.39 16 13 C -0.56 -33.32 9.43 25.60 0.24 -33.07 16 14 H 0.07 3.95 7.81 -2.91 -0.02 3.92 16 15 C 0.01 0.63 5.46 84.65 0.46 1.10 16 16 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 17 Si 0.99 43.82 29.54 68.60 2.03 45.84 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 21 C -0.17 -5.72 9.97 22.34 0.22 -5.49 16 22 C -0.06 -1.77 9.42 22.47 0.21 -1.56 16 23 C -0.14 -3.17 9.08 22.49 0.20 -2.97 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 26 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.14 2.29 6.20 -2.91 -0.02 2.27 16 30 H 0.14 3.95 6.20 -2.91 -0.02 3.94 16 31 H 0.11 5.02 6.28 -2.91 -0.02 5.00 16 32 H 0.00 0.08 7.66 -2.38 -0.02 0.06 16 33 H 0.00 0.08 7.65 -2.39 -0.02 0.06 16 34 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.16 3.28 6.20 -2.91 -0.02 3.27 16 37 H 0.12 2.75 6.20 -2.91 -0.02 2.73 16 Total: -1.00 -67.95 315.03 5.69 -62.26 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.07 Total: 13.78 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 3.24 Total: -48.84 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.93 Total: -18.34 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -67.95 5.69 -62.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239491031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.318 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds