Wall clock time and date at job start Mon Mar 30 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35775 * 117.00394 * 2 1 4 4 C 1.38569 * 120.13570 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.08450 * 179.72370 * 4 3 2 6 6 C 1.38508 * 120.36590 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.27932 * 359.97438 * 6 5 4 8 8 C 1.39624 * 119.90646 * 0.02562 * 7 6 5 9 9 C 1.47854 * 120.17779 * 179.97438 * 8 7 6 10 10 C 1.40025 * 119.88411 * 65.00142 * 9 8 7 11 11 C 1.36201 * 120.11245 * 179.97438 * 10 9 8 12 12 C 1.40964 * 119.88183 * 0.02562 * 11 10 9 13 13 C 1.40999 * 120.11083 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99720 * 24.70840 * 13 12 11 15 15 C 1.39991 * 119.99898 * 204.70646 * 13 12 11 16 16 N 1.30818 * 119.99849 * 17.98114 * 15 13 12 17 17 Si 1.86799 * 119.99848 * 197.97400 * 15 13 12 18 18 H 1.48498 * 109.46573 * 90.00624 * 17 15 13 19 19 H 1.48498 * 109.46877 * 210.00200 * 17 15 13 20 20 H 1.48500 * 109.47296 * 330.00667 * 17 15 13 21 21 C 1.40937 * 119.78099 * 0.02562 * 12 11 10 22 22 C 1.36236 * 119.87555 * 359.69819 * 21 12 11 23 23 C 1.50700 * 119.93763 * 180.29309 * 22 21 12 24 24 H 1.08997 * 109.46945 * 299.99501 * 1 2 3 25 25 H 1.08995 * 109.47301 * 59.99650 * 1 2 3 26 26 H 1.08999 * 109.47011 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.95598 * 359.69649 * 4 3 2 28 28 H 1.08004 * 119.81481 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.86159 * 179.97438 * 6 5 4 30 30 H 1.07995 * 120.05094 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.94807 * 359.97438 * 10 9 8 32 32 H 1.07998 * 120.05800 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99544 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.06339 * 179.97438 * 21 12 11 35 35 H 1.09002 * 109.47120 * 270.28026 * 23 22 21 36 36 H 1.09004 * 109.47671 * 30.28038 * 23 22 21 37 37 H 1.09006 * 109.47100 * 150.28427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2936 2.3737 0.0005 5 6 1.9222 3.6044 0.0063 6 6 3.3049 3.6843 0.0121 7 6 4.0677 2.5359 0.0127 8 6 3.4446 1.2864 0.0069 9 6 4.2568 0.0509 0.0070 10 6 5.0643 -0.2532 1.1098 11 6 5.8139 -1.3903 1.1150 12 6 5.7762 -2.2614 0.0074 13 6 6.5507 -3.4396 0.0074 14 1 6.8475 -3.8907 0.9428 15 6 6.9349 -4.0247 -1.2049 16 7 6.8939 -3.3263 -2.3103 17 14 7.5062 -5.8028 -1.2442 18 1 6.3392 -6.6927 -1.4704 19 1 8.4870 -5.9833 -2.3445 20 1 8.1466 -6.1457 0.0510 21 6 4.9626 -1.9502 -1.1006 22 6 4.2123 -0.8131 -1.0934 23 6 3.3368 -0.4823 -2.2746 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2151 2.3190 -0.0040 28 1 1.3319 4.5088 0.0063 29 1 3.7877 4.6504 0.0162 30 1 5.1456 2.6025 0.0177 31 1 5.0927 0.4151 1.9578 32 1 6.4361 -1.6242 1.9662 33 1 7.1605 -3.7316 -3.1502 34 1 4.9306 -2.6141 -1.9518 35 1 3.9044 0.1088 -2.9933 36 1 3.0009 -1.4051 -2.7477 37 1 2.4718 0.0888 -1.9371 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239541703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:03 Heat of formation + Delta-G solvation = -16.505028 kcal Electronic energy + Delta-G solvation = -19784.300994 eV Core-core repulsion = 16876.471860 eV Total energy + Delta-G solvation = -2907.829134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15458 -39.38882 -38.04925 -35.78851 -33.52500 -32.66923 -30.94727 -30.35157 -28.06902 -27.60245 -26.77562 -23.73774 -22.80497 -22.07977 -21.25193 -19.02513 -18.82897 -17.26633 -17.04409 -16.73381 -16.64723 -15.60121 -15.49795 -15.36095 -14.99705 -14.50013 -14.33746 -14.13217 -13.62128 -13.43887 -13.43384 -13.02551 -12.97440 -12.77361 -12.69297 -12.46948 -12.22273 -12.15724 -11.82942 -11.73281 -11.33799 -11.18223 -10.97512 -9.78413 -9.26352 -9.19062 -8.79990 -8.59775 -6.30835 0.40928 0.61037 1.01498 1.21687 1.37149 1.50779 1.52716 2.20258 2.55848 2.69742 2.96221 3.71272 3.99669 4.08606 4.29107 4.35408 4.40477 4.43297 4.44456 4.58630 4.63905 4.70816 4.75714 4.86395 4.88194 4.96023 5.12031 5.16316 5.18953 5.36593 5.46195 5.55590 5.59664 5.71151 5.77847 5.97875 6.10421 6.14277 6.29928 6.40152 6.69022 6.71393 6.93780 7.07448 8.32155 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.029925 B = 0.005024 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.436993 B = 5571.607870 C = 5877.686441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.113 3.887 4 C -0.210 4.210 5 C -0.091 4.091 6 C -0.156 4.156 7 C -0.097 4.097 8 C -0.060 4.060 9 C -0.174 4.174 10 C -0.076 4.076 11 C -0.250 4.250 12 C 0.084 3.916 13 C -0.498 4.498 14 H 0.074 0.926 15 C 0.036 3.964 16 N -0.821 5.821 17 Si 0.983 3.017 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.258 1.258 21 C -0.191 4.191 22 C -0.051 4.051 23 C -0.095 4.095 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.288 0.712 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.940 9.285 1.031 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.109 4.109 6 C -0.174 4.174 7 C -0.115 4.115 8 C -0.060 4.060 9 C -0.175 4.175 10 C -0.094 4.094 11 C -0.269 4.269 12 C 0.082 3.918 13 C -0.527 4.527 14 H 0.093 0.907 15 C -0.179 4.179 16 N -0.447 5.447 17 Si 0.804 3.196 18 H -0.187 1.187 19 H -0.190 1.190 20 H -0.182 1.182 21 C -0.210 4.210 22 C -0.052 4.052 23 C -0.151 4.151 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.805 9.085 0.777 14.138 hybrid contribution 0.485 -0.932 -0.036 1.052 sum -10.320 8.152 0.741 13.172 Atomic orbital electron populations 1.23288 0.77310 1.04863 1.02231 1.86209 1.22661 1.27298 1.88342 1.19335 0.91512 0.85005 0.97370 1.21436 1.00820 0.91733 1.08873 1.21296 0.94508 0.97540 0.97535 1.21245 0.94353 0.98224 1.03541 1.21288 1.00008 0.91165 0.99016 1.18329 0.90091 0.93300 1.04329 1.18085 1.05660 0.97466 0.96278 1.20536 0.95953 0.96250 0.96696 1.20801 1.07184 0.97913 1.01004 1.17997 0.90052 0.92077 0.91700 1.19797 1.30319 1.08636 0.93988 0.90740 1.26793 0.93277 1.03700 0.94153 1.69895 1.35509 1.38518 1.00737 0.85195 0.78781 0.76389 0.79282 1.18677 1.19018 1.18174 1.20804 1.00718 0.98986 1.00512 1.19546 0.96349 0.94087 0.95173 1.20665 0.98415 1.00810 0.95230 0.91524 0.91406 0.87662 0.83201 0.82679 0.83569 0.86300 0.87457 0.88670 0.90087 0.88228 0.92654 0.92981 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -11.51 8.43 -91.03 -0.77 -12.28 16 3 C 0.11 3.84 5.26 22.81 0.12 3.96 16 4 C -0.21 -5.38 9.03 22.34 0.20 -5.18 16 5 C -0.09 -2.05 10.03 22.32 0.22 -1.83 16 6 C -0.16 -3.96 10.03 22.25 0.22 -3.74 16 7 C -0.10 -3.22 9.74 22.52 0.22 -3.00 16 8 C -0.06 -2.32 4.62 -19.94 -0.09 -2.42 16 9 C -0.17 -8.17 4.97 -19.88 -0.10 -8.27 16 10 C -0.08 -3.68 9.66 22.23 0.21 -3.46 16 11 C -0.25 -13.21 9.73 22.46 0.22 -12.99 16 12 C 0.08 4.82 5.57 -21.27 -0.12 4.70 16 13 C -0.50 -28.13 9.03 23.37 0.21 -27.91 16 14 H 0.07 4.06 7.91 -2.91 -0.02 4.04 16 15 C 0.04 1.88 5.13 85.27 0.44 2.32 16 16 N -0.82 -44.38 10.96 21.84 0.24 -44.14 16 17 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 19 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 C -0.19 -10.67 8.26 22.46 0.19 -10.49 16 22 C -0.05 -2.56 5.65 -19.91 -0.11 -2.67 16 23 C -0.09 -3.98 9.42 71.24 0.67 -3.31 16 24 H 0.07 1.22 7.67 -2.39 -0.02 1.21 16 25 H 0.07 1.23 7.66 -2.39 -0.02 1.22 16 26 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.15 2.86 6.30 -2.91 -0.02 2.84 16 28 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 31 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 34 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 37 H 0.07 2.78 4.63 -2.38 -0.01 2.77 16 Total: -1.00 -66.42 309.52 6.19 -60.23 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 1.07 Total: 27.64 kcal Atomic # 6 Polarization: -76.40 SS G_CDS: 3.62 Total: -72.78 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.24 Total: -44.14 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.77 Total: -12.28 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -66.42 6.19 -60.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239541703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.726 kcal (2) G-P(sol) polarization free energy of solvation -66.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds