Wall clock time and date at job start Mon Mar 30 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35847 * 116.99864 * 2 1 4 4 C 1.38589 * 120.11601 * 359.97438 * 3 2 1 5 5 C 1.38183 * 120.06346 * 180.23125 * 4 3 2 6 6 C 1.38389 * 120.29882 * 359.49508 * 5 4 3 7 7 C 1.50701 * 119.88100 * 180.25364 * 6 5 4 8 8 C 1.38006 * 120.23681 * 0.50689 * 6 5 4 9 9 C 1.39295 * 119.93782 * 359.74686 * 8 6 5 10 10 C 1.48344 * 120.15422 * 180.02562 * 9 8 6 11 11 C 1.39755 * 120.00006 * 129.97810 * 10 9 8 12 12 C 1.38387 * 120.37689 * 179.97438 * 11 10 9 13 13 C 1.37728 * 120.37794 * 359.97438 * 12 11 10 14 14 C 1.40756 * 119.99603 * 0.02562 * 13 12 11 15 15 C 1.41426 * 120.18429 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99777 * 204.51537 * 15 14 13 17 17 C 1.39925 * 119.99930 * 24.51564 * 15 14 13 18 18 N 1.30828 * 120.00473 * 17.89886 * 17 15 14 19 19 Si 1.86808 * 119.99698 * 197.90271 * 17 15 14 20 20 H 1.48500 * 109.47031 * 89.99844 * 19 17 15 21 21 H 1.48502 * 109.46839 * 209.99451 * 19 17 15 22 22 H 1.48496 * 109.46939 * 329.99640 * 19 17 15 23 23 C 1.38750 * 120.00393 * 309.70831 * 10 9 8 24 24 H 1.09008 * 109.46507 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47053 * 299.99880 * 1 2 3 26 26 H 1.08998 * 109.47229 * 60.00351 * 1 2 3 27 27 H 1.07995 * 119.96702 * 359.95874 * 4 3 2 28 28 H 1.07994 * 119.85159 * 179.74495 * 5 4 3 29 29 H 1.08999 * 109.46937 * 270.25090 * 7 6 5 30 30 H 1.09001 * 109.47142 * 30.25314 * 7 6 5 31 31 H 1.09004 * 109.47186 * 150.25403 * 7 6 5 32 32 H 1.08002 * 120.03052 * 179.76676 * 8 6 5 33 33 H 1.08003 * 119.81558 * 0.02562 * 11 10 9 34 34 H 1.07996 * 119.81176 * 180.02562 * 12 11 10 35 35 H 1.08002 * 119.99719 * 180.02562 * 13 12 11 36 36 H 0.96997 * 120.00331 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.18861 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2932 2.3742 -0.0005 5 6 1.9216 3.6049 -0.0054 6 6 3.3033 3.6833 0.0008 7 6 3.9788 5.0304 0.0013 8 6 4.0647 2.5323 0.0014 9 6 3.4415 1.2866 0.0010 10 6 4.2553 0.0463 0.0021 11 6 3.9875 -0.9644 0.9295 12 6 4.7414 -2.1248 0.9371 13 6 5.7639 -2.2972 0.0306 14 6 6.0473 -1.2895 -0.9104 15 6 7.0966 -1.4620 -1.8427 16 1 7.5768 -0.5996 -2.2810 17 6 7.5127 -2.7501 -2.1973 18 7 6.7372 -3.7766 -1.9601 19 14 9.1759 -3.0039 -3.0092 20 1 10.2077 -3.2268 -1.9648 21 1 9.1141 -4.1870 -3.9045 22 1 9.5277 -1.7996 -3.8037 23 6 5.2788 -0.1129 -0.9212 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2146 2.3192 -0.0016 28 1 1.3319 4.5096 -0.0099 29 1 4.1424 5.3552 -1.0263 30 1 3.3458 5.7542 0.5147 31 1 4.9369 4.9563 0.5158 32 1 5.1428 2.5974 0.0024 33 1 3.1871 -0.8394 1.6437 34 1 4.5263 -2.9001 1.6575 35 1 6.3481 -3.2055 0.0418 36 1 7.0255 -4.6694 -2.2062 37 1 5.4853 0.6640 -1.6423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239768876.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:20 Heat of formation + Delta-G solvation = -6.475482 kcal Electronic energy + Delta-G solvation = -19388.210362 eV Core-core repulsion = 16480.816142 eV Total energy + Delta-G solvation = -2907.394220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89514 -37.50776 -37.04167 -33.78818 -32.04275 -31.21834 -29.78188 -28.04667 -27.57356 -25.65542 -25.14657 -22.66018 -21.27782 -20.34447 -19.77534 -17.82352 -16.91611 -15.88969 -15.43696 -15.32350 -14.78393 -14.44946 -14.05402 -13.63137 -13.53847 -13.50894 -13.12880 -12.67451 -12.23125 -12.07522 -11.94946 -11.63861 -11.55069 -11.31243 -11.13443 -10.89721 -10.70472 -10.63270 -10.49716 -10.37919 -9.56870 -9.36992 -9.08744 -8.59812 -7.80765 -7.39475 -6.98301 -6.68063 -4.28650 1.58335 1.74005 2.85708 3.05070 3.11144 3.14651 3.28567 3.65150 3.98611 4.10979 4.69933 4.99513 5.12472 5.18442 5.24652 5.29902 5.46443 5.61374 5.63384 5.74093 5.78963 5.87840 5.96372 6.09279 6.34972 6.37590 6.58306 6.63816 6.68084 6.90710 6.99321 7.08331 7.15948 7.32685 7.42518 7.60641 7.81421 7.96798 8.09291 8.15954 8.34180 8.69467 8.96135 9.03004 10.26839 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.005108 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.061949 B = 5480.065352 C = 6333.637809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.126 3.874 4 C -0.209 4.209 5 C -0.098 4.098 6 C -0.128 4.128 7 C -0.105 4.105 8 C -0.077 4.077 9 C -0.040 4.040 10 C -0.034 4.034 11 C -0.200 4.200 12 C -0.111 4.111 13 C -0.156 4.156 14 C 0.106 3.894 15 C -0.467 4.467 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.798 5.798 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.202 4.202 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.279 0.721 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 9.601 3.114 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.209 6.209 3 C 0.080 3.920 4 C -0.228 4.228 5 C -0.116 4.116 6 C -0.128 4.128 7 C -0.162 4.162 8 C -0.095 4.095 9 C -0.040 4.040 10 C -0.034 4.034 11 C -0.219 4.219 12 C -0.129 4.129 13 C -0.176 4.176 14 C 0.103 3.897 15 C -0.497 4.497 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.423 5.423 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.221 4.221 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.978 9.144 3.063 12.516 hybrid contribution 0.288 -0.162 -0.467 0.571 sum -7.690 8.982 2.597 12.107 Atomic orbital electron populations 1.22999 0.79757 1.03541 1.00572 1.86282 1.19964 1.26397 1.88275 1.19088 0.91754 0.84101 0.97044 1.21057 0.99422 0.92362 1.09979 1.20657 0.93841 0.96534 1.00582 1.19693 0.93539 0.95275 1.04290 1.20676 1.00218 0.93463 1.01839 1.21012 0.99855 0.90140 0.98479 1.18538 0.89491 0.94324 1.01684 1.18119 0.95876 0.91843 0.97557 1.20315 1.03293 0.95362 1.02947 1.20615 0.97281 0.96104 0.98934 1.21391 0.99483 1.01004 0.95699 1.17511 0.90747 0.90542 0.90861 1.19524 1.15521 0.92595 1.22028 0.90560 1.25862 0.97872 0.95713 0.94570 1.69833 1.34726 1.00338 1.37447 0.86350 0.82467 0.78645 0.79441 1.19348 1.20426 1.18697 1.21005 0.98857 1.00597 1.01656 0.88572 0.93242 0.93185 0.86000 0.86544 0.91720 0.92172 0.91753 0.85319 0.89408 0.89379 0.86467 0.91026 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.30 -5.45 8.83 -19.26 -0.17 -5.62 16 3 C 0.13 2.31 6.59 -38.87 -0.26 2.05 16 4 C -0.21 -3.14 9.03 -39.47 -0.36 -3.50 16 5 C -0.10 -1.37 9.68 -39.55 -0.38 -1.75 16 6 C -0.13 -1.89 5.88 -104.65 -0.61 -2.51 16 7 C -0.11 -1.19 10.00 36.01 0.36 -0.83 16 8 C -0.08 -1.36 9.15 -39.27 -0.36 -1.72 16 9 C -0.04 -0.81 5.48 -104.76 -0.57 -1.38 16 10 C -0.03 -0.80 5.27 -104.98 -0.55 -1.35 16 11 C -0.20 -4.74 8.78 -38.96 -0.34 -5.08 16 12 C -0.11 -2.71 10.01 -39.71 -0.40 -3.11 16 13 C -0.16 -4.18 8.69 -38.82 -0.34 -4.52 16 14 C 0.11 2.89 5.57 -106.87 -0.60 2.29 16 15 C -0.47 -12.64 9.05 -37.74 -0.34 -12.99 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 17 C 0.08 1.97 5.14 -17.35 -0.09 1.88 16 18 N -0.80 -21.10 10.96 55.55 0.61 -20.50 16 19 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.20 -5.12 9.25 -38.53 -0.36 -5.47 16 24 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 25 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 26 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 27 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.13 2.20 8.04 -52.49 -0.42 1.78 16 33 H 0.09 1.95 7.66 -52.48 -0.40 1.55 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 36 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 37 H 0.09 2.25 8.04 -52.49 -0.42 1.82 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -29.65 314.38 -8.83 -38.49 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.78 Total: 5.55 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: -4.20 Total: -36.65 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.61 Total: -20.50 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.17 Total: -5.62 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.65 -8.83 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239768876.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.010 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds