Wall clock time and date at job start Mon Mar 30 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36271 * 120.06387 * 2 1 4 4 C 1.39915 * 120.11738 * 179.97438 * 3 2 1 5 5 C 1.47992 * 119.87616 * 180.02562 * 4 3 2 6 6 C 1.39619 * 120.14463 * 359.73919 * 5 4 3 7 7 C 1.37919 * 119.85268 * 179.74720 * 6 5 4 8 8 C 1.38409 * 120.14497 * 0.53187 * 7 6 5 9 9 C 1.38373 * 120.29060 * 359.74820 * 8 7 6 10 10 C 1.50691 * 119.92559 * 179.97438 * 9 8 7 11 11 O 1.42899 * 109.47587 * 269.97429 * 10 9 8 12 12 C 1.37960 * 120.14363 * 359.97204 * 9 8 7 13 13 C 1.39946 * 120.24176 * 0.04255 * 4 3 2 14 14 C 1.36242 * 120.12398 * 359.97438 * 13 4 3 15 15 C 1.40916 * 120.05735 * 180.02562 * 2 1 3 16 16 C 1.41027 * 120.11888 * 0.25893 * 15 2 1 17 17 H 1.08000 * 119.99944 * 333.33435 * 16 15 2 18 18 C 1.40007 * 120.00362 * 153.33694 * 16 15 2 19 19 N 1.30798 * 119.99935 * 343.89654 * 18 16 15 20 20 Si 1.86797 * 120.00316 * 163.89389 * 18 16 15 21 21 H 1.48497 * 109.46998 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47105 * 120.00051 * 20 18 16 23 23 H 1.48501 * 109.47725 * 240.00125 * 20 18 16 24 24 H 1.08996 * 109.47497 * 269.96217 * 1 2 3 25 25 H 1.09009 * 109.47005 * 29.95862 * 1 2 3 26 26 H 1.09004 * 109.47575 * 149.95418 * 1 2 3 27 27 H 1.07999 * 119.93549 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.07581 * 0.03017 * 6 5 4 29 29 H 1.07998 * 119.92903 * 180.28345 * 7 6 5 30 30 H 1.08000 * 119.85749 * 179.71764 * 8 7 6 31 31 H 1.09003 * 109.47318 * 29.97693 * 10 9 8 32 32 H 1.09008 * 109.47085 * 149.97638 * 10 9 8 33 33 H 0.96698 * 114.00622 * 179.97438 * 11 10 9 34 34 H 1.07996 * 120.07094 * 180.02562 * 12 9 8 35 35 H 1.08006 * 119.93926 * 179.97438 * 13 4 3 36 36 H 1.07998 * 120.06283 * 179.97438 * 14 13 4 37 37 H 0.97001 * 119.99756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1897 1.1794 0.0000 4 6 3.5888 1.1807 0.0005 5 6 4.3248 2.4646 0.0011 6 6 3.6260 3.6734 -0.0044 7 6 4.3180 4.8664 0.0015 8 6 5.7021 4.8672 0.0016 9 6 6.4007 3.6727 0.0012 10 6 7.9075 3.6832 0.0008 11 8 8.3836 3.6861 -1.3465 12 6 5.7206 2.4724 0.0012 13 6 4.2948 -0.0277 0.0002 14 6 3.6222 -1.2125 -0.0002 15 6 2.2128 -1.2197 -0.0005 16 6 1.5114 -2.4431 -0.0066 17 1 0.5161 -2.4971 0.4091 18 6 2.1054 -3.5879 -0.5515 19 7 3.1532 -3.4753 -1.3262 20 14 1.4015 -5.2761 -0.1720 21 1 0.2242 -5.1321 0.7215 22 1 0.9853 -5.9345 -1.4363 23 1 2.4352 -6.1039 0.5001 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5145 27 1 1.6496 2.1147 -0.0004 28 1 2.5460 3.6742 -0.0086 29 1 3.7787 5.8021 0.0018 30 1 6.2392 5.8041 0.0016 31 1 8.2649 4.5758 0.5144 32 1 8.2772 2.7958 0.5148 33 1 9.3475 3.6932 -1.4232 34 1 6.2670 1.5409 0.0013 35 1 5.3748 -0.0210 0.0002 36 1 4.1680 -2.1444 -0.0009 37 1 3.5649 -4.2685 -1.7034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241510048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:48 Heat of formation + Delta-G solvation = -22.597768 kcal Electronic energy + Delta-G solvation = -19054.633414 eV Core-core repulsion = 16146.540079 eV Total energy + Delta-G solvation = -2908.093335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.14408 -37.70525 -36.40608 -33.98668 -32.24714 -31.43241 -30.42070 -28.77323 -26.49765 -25.50892 -24.78978 -22.24656 -21.65114 -19.76693 -19.18100 -17.41837 -17.36297 -16.37789 -15.45098 -15.10236 -14.94476 -14.18056 -13.91332 -13.54410 -13.18107 -13.07688 -12.79220 -12.70076 -12.38837 -12.03415 -11.75207 -11.66708 -11.28150 -11.21322 -11.16132 -10.82454 -10.61003 -10.51131 -10.38664 -10.02821 -9.59947 -9.41695 -9.31889 -8.53072 -8.43084 -7.47416 -7.05065 -6.87064 -4.43663 1.58402 1.81903 2.74956 2.98834 3.03024 3.04135 3.16354 3.80512 4.12909 4.54389 4.76653 5.09472 5.15905 5.37985 5.47072 5.51507 5.58379 5.72070 5.93238 6.01809 6.15550 6.19180 6.35822 6.49725 6.53725 6.62151 6.69055 6.83302 6.92391 6.96081 6.97674 7.06478 7.18708 7.38157 7.49043 7.55878 7.63690 7.85481 7.95115 8.06156 8.16464 8.48804 8.72450 8.84745 10.00036 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.026594 B = 0.004431 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.609151 B = 6317.307841 C = 7234.259142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.061 4.061 4 C -0.201 4.201 5 C 0.021 3.979 6 C -0.140 4.140 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.089 4.089 10 C 0.120 3.880 11 O -0.566 6.566 12 C -0.123 4.123 13 C -0.079 4.079 14 C -0.168 4.168 15 C 0.123 3.877 16 C -0.444 4.444 17 H 0.085 0.915 18 C 0.073 3.927 19 N -0.780 5.780 20 Si 0.910 3.090 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.270 1.270 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.374 0.626 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 7.853 2.571 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.203 4.203 3 C -0.079 4.079 4 C -0.202 4.202 5 C 0.021 3.979 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.161 4.161 9 C -0.089 4.089 10 C 0.043 3.957 11 O -0.371 6.371 12 C -0.141 4.141 13 C -0.097 4.097 14 C -0.187 4.187 15 C 0.120 3.880 16 C -0.472 4.472 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.404 5.404 20 Si 0.734 3.266 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.195 1.195 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.379 7.687 2.293 9.139 hybrid contribution 0.443 -0.764 0.157 0.897 sum 4.822 6.922 2.450 8.785 Atomic orbital electron populations 1.20413 0.93379 1.00683 0.99734 1.19454 0.94529 0.93026 1.13278 1.20261 0.92789 0.96120 0.98736 1.18052 0.92531 0.90533 1.19124 1.19000 0.92295 0.93119 0.93480 1.21235 0.99746 0.91829 1.02962 1.20909 0.94026 0.97548 1.00764 1.20755 0.94144 0.96674 1.04497 1.19394 0.93535 0.93689 1.02258 1.20980 0.91490 0.99808 0.83437 1.86623 1.26101 1.97686 1.26734 1.21076 0.93855 0.96932 1.02206 1.20517 0.97357 0.92484 0.99349 1.20973 0.94492 0.96570 1.06683 1.17600 0.91903 0.91718 0.86795 1.19734 1.02113 0.92652 1.32700 0.89740 1.26033 0.94188 1.01751 0.92697 1.69823 1.17694 1.32202 1.20644 0.86222 0.80166 0.80839 0.79385 1.18179 1.19793 1.19531 0.93950 0.94264 0.92007 0.88925 0.86294 0.86824 0.87200 0.93273 0.93019 0.77948 0.86286 0.89089 0.86424 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.39 36.00 0.34 -1.39 16 2 C -0.20 -4.78 5.90 -104.32 -0.62 -5.39 16 3 C -0.06 -1.37 9.00 -39.66 -0.36 -1.73 16 4 C -0.20 -4.58 5.90 -104.63 -0.62 -5.19 16 5 C 0.02 0.43 5.88 -104.88 -0.62 -0.19 16 6 C -0.14 -2.52 9.43 -39.18 -0.37 -2.89 16 7 C -0.11 -1.80 10.03 -39.64 -0.40 -2.20 16 8 C -0.14 -2.22 9.70 -39.47 -0.38 -2.60 16 9 C -0.09 -1.46 5.50 -104.68 -0.58 -2.04 16 10 C 0.12 1.56 7.17 36.00 0.26 1.82 16 11 O -0.57 -7.58 13.64 -35.23 -0.48 -8.06 16 12 C -0.12 -2.30 9.08 -39.18 -0.36 -2.66 16 13 C -0.08 -1.85 9.36 -39.66 -0.37 -2.22 16 14 C -0.17 -4.28 8.61 -39.28 -0.34 -4.62 16 15 C 0.12 3.16 5.56 -106.80 -0.59 2.56 16 16 C -0.44 -11.14 8.09 -37.86 -0.31 -11.45 16 17 H 0.08 2.03 6.88 -52.49 -0.36 1.66 16 18 C 0.07 1.75 5.15 -17.33 -0.09 1.66 16 19 N -0.78 -19.39 10.97 55.55 0.61 -18.78 16 20 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.70 8.08 -51.92 -0.42 0.28 16 26 H 0.06 1.27 6.77 -51.93 -0.35 0.91 16 27 H 0.09 1.85 6.18 -52.49 -0.32 1.53 16 28 H 0.12 2.01 6.18 -52.49 -0.32 1.68 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.05 0.61 8.08 -51.92 -0.42 0.19 16 33 H 0.37 2.88 9.12 45.56 0.42 3.29 16 34 H 0.12 2.18 6.18 -52.49 -0.32 1.86 16 35 H 0.09 1.95 6.18 -52.48 -0.32 1.63 16 36 H 0.12 3.06 6.23 -52.49 -0.33 2.74 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -28.69 309.79 -9.21 -37.90 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.58 Total: 10.08 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: -5.39 Total: -38.53 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.78 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.48 Total: -8.06 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.69 -9.21 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241510048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.299 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds