Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36274 * 119.93818 * 2 1 4 4 C 1.40916 * 119.87675 * 179.97438 * 3 2 1 5 5 C 1.41027 * 120.11842 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99759 * 335.03381 * 5 4 3 7 7 C 1.40004 * 120.00034 * 155.02830 * 5 4 3 8 8 N 1.30803 * 120.00203 * 342.14485 * 7 5 4 9 9 Si 1.86804 * 120.00120 * 162.14400 * 7 5 4 10 10 H 1.48495 * 109.46997 * 94.65314 * 9 7 5 11 11 H 1.48498 * 109.47141 * 214.65643 * 9 7 5 12 12 H 1.48497 * 109.46730 * 334.65552 * 9 7 5 13 13 C 1.40953 * 119.76298 * 359.97438 * 4 3 2 14 14 C 1.36232 * 119.87812 * 359.71955 * 13 4 3 15 15 C 1.39922 * 119.94063 * 179.97438 * 2 1 3 16 16 C 1.47987 * 119.87955 * 0.02562 * 15 2 1 17 17 C 1.39629 * 120.14642 * 310.00467 * 16 15 2 18 18 C 1.37914 * 119.85244 * 180.02562 * 17 16 15 19 19 C 1.38409 * 120.14455 * 359.97438 * 18 17 16 20 20 C 1.38366 * 120.29371 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.92447 * 180.02562 * 20 19 18 22 22 O 1.42899 * 109.47116 * 269.97404 * 21 20 19 23 23 C 1.37957 * 120.14341 * 359.97438 * 20 19 18 24 24 H 1.08993 * 109.47218 * 270.02391 * 1 2 3 25 25 H 1.09003 * 109.46691 * 30.02603 * 1 2 3 26 26 H 1.09003 * 109.46605 * 150.02576 * 1 2 3 27 27 H 1.07995 * 120.05830 * 359.95165 * 3 2 1 28 28 H 0.96995 * 119.99799 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.05539 * 179.97438 * 13 4 3 30 30 H 1.07999 * 119.94090 * 180.29071 * 14 13 4 31 31 H 1.08005 * 120.06732 * 359.74031 * 17 16 15 32 32 H 1.07998 * 119.92369 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.84712 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47306 * 29.97746 * 21 20 19 35 35 H 1.09003 * 109.46921 * 149.97710 * 21 20 19 36 36 H 0.96703 * 114.00027 * 180.02562 * 22 21 20 37 37 H 1.08004 * 120.07280 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1809 0.0000 4 6 3.5963 1.1794 0.0005 5 6 4.3052 2.3985 0.0011 6 1 3.8438 3.2916 -0.3937 7 6 5.6071 2.4510 0.5135 8 7 6.0414 1.4962 1.2950 9 14 6.7240 3.8845 0.0810 10 1 6.6362 4.9184 1.1433 11 1 8.1251 3.4049 -0.0284 12 1 6.2985 4.4698 -1.2157 13 6 4.2947 -0.0449 0.0016 14 6 3.6049 -1.2197 0.0079 15 6 2.2054 -1.2125 0.0005 16 6 1.4614 -2.4918 0.0005 17 6 0.4376 -2.7075 0.9251 18 6 -0.2515 -3.9022 0.9200 19 6 0.0697 -4.8859 0.0008 20 6 1.0832 -4.6785 -0.9181 21 6 1.4255 -5.7550 -1.9155 22 8 2.4258 -6.6140 -1.3647 23 6 1.7802 -3.4879 -0.9237 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6471 2.1161 -0.0008 28 1 6.9434 1.5325 1.6497 29 1 5.3746 -0.0516 0.0016 30 1 4.1390 -2.1584 0.0135 31 1 0.1889 -1.9423 1.6455 32 1 -1.0433 -4.0705 1.6349 33 1 -0.4728 -5.8198 0.0014 34 1 0.5323 -6.3366 -2.1432 35 1 1.8034 -5.2966 -2.8294 36 1 2.6957 -7.3318 -1.9538 37 1 2.5714 -3.3274 -1.6412 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241511525.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = -39.169327 kcal Electronic energy + Delta-G solvation = -19164.192989 eV Core-core repulsion = 16255.381057 eV Total energy + Delta-G solvation = -2908.811932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66052 -39.23566 -37.47416 -35.90625 -33.41986 -32.94406 -32.23786 -30.52685 -27.64482 -26.92566 -26.71499 -23.72449 -22.43374 -22.03650 -21.11848 -18.85584 -18.34805 -17.63730 -17.14854 -16.52112 -16.41257 -15.62565 -15.54343 -15.16960 -14.77624 -14.42834 -14.28636 -14.15103 -13.79437 -13.58649 -13.43325 -13.17356 -12.88729 -12.84248 -12.65374 -12.46389 -12.27839 -11.97068 -11.75433 -11.38977 -11.29221 -11.00690 -10.94502 -9.87889 -9.71286 -9.31451 -8.89433 -8.67404 -6.35430 0.28806 0.48889 1.04493 1.14946 1.36563 1.48686 1.54001 2.17814 2.63109 2.90901 3.63269 3.68616 3.98101 4.10739 4.17279 4.27682 4.35923 4.37530 4.45206 4.56121 4.62885 4.69061 4.78802 4.89101 4.98874 5.07846 5.11817 5.16801 5.20043 5.30587 5.45321 5.59584 5.65483 5.71503 5.81149 5.97085 6.09645 6.21425 6.24972 6.34000 6.64971 6.87872 6.94311 7.00437 8.26835 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.004396 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.422189 B = 6367.925131 C = 7044.635881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.044 4.044 3 C -0.244 4.244 4 C 0.088 3.912 5 C -0.494 4.494 6 H 0.079 0.921 7 C 0.035 3.965 8 N -0.820 5.820 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.265 1.265 12 H -0.257 1.257 13 C -0.196 4.196 14 C -0.085 4.085 15 C -0.195 4.195 16 C -0.016 4.016 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.104 4.104 21 C 0.120 3.880 22 O -0.590 6.590 23 C -0.121 4.121 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.290 0.710 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -10.701 -4.118 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.045 4.045 3 C -0.264 4.264 4 C 0.086 3.914 5 C -0.522 4.522 6 H 0.097 0.903 7 C -0.181 4.181 8 N -0.445 5.445 9 Si 0.804 3.196 10 H -0.185 1.185 11 H -0.190 1.190 12 H -0.181 1.181 13 C -0.216 4.216 14 C -0.104 4.104 15 C -0.196 4.196 16 C -0.016 4.016 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.137 4.137 20 C -0.104 4.104 21 C 0.043 3.957 22 O -0.399 6.399 23 C -0.139 4.139 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.249 0.751 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.614 -10.376 -3.476 13.926 hybrid contribution 1.128 0.510 -0.424 1.308 sum -7.486 -9.865 -3.900 12.984 Atomic orbital electron populations 1.20794 0.90461 1.02190 1.02126 1.19554 0.96061 0.91864 0.96976 1.20748 0.93755 0.96607 1.15249 1.18009 0.92163 0.93607 0.87638 1.19867 0.99441 0.96175 1.36763 0.90275 1.26854 0.99343 1.00180 0.91682 1.69883 1.18766 1.33767 1.22123 0.85166 0.76978 0.77461 0.79971 1.18480 1.18981 1.18074 1.20906 0.99028 0.92318 1.09299 1.20616 0.93684 0.96541 0.99534 1.18297 0.92091 0.91703 1.17541 1.18883 0.95143 0.92643 0.94953 1.21486 0.96242 0.98300 0.98252 1.21344 1.00159 0.92743 0.99317 1.21300 0.97728 0.99802 0.94892 1.19846 0.97127 0.94441 0.98952 1.21020 0.91832 0.89736 0.93080 1.86541 1.59853 1.45560 1.47993 1.21220 0.99743 0.93907 0.99044 0.90835 0.91700 0.91511 0.88216 0.89935 0.88291 0.88764 0.86098 0.83211 0.83611 0.90088 0.92374 0.75145 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 8.43 71.24 0.60 -2.84 16 2 C -0.04 -2.01 5.83 -19.91 -0.12 -2.12 16 3 C -0.24 -12.33 9.36 22.47 0.21 -12.11 16 4 C 0.09 4.92 5.57 -21.27 -0.12 4.80 16 5 C -0.49 -27.09 9.03 23.38 0.21 -26.88 16 6 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 7 C 0.04 1.80 5.13 85.27 0.44 2.24 16 8 N -0.82 -43.79 10.97 21.84 0.24 -43.55 16 9 Si 0.98 38.33 29.60 68.60 2.03 40.36 16 10 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 11 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 12 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 13 C -0.20 -10.85 8.63 22.47 0.19 -10.65 16 14 C -0.09 -4.29 9.44 22.22 0.21 -4.08 16 15 C -0.20 -8.96 5.50 -19.87 -0.11 -9.07 16 16 C -0.02 -0.63 4.71 -20.03 -0.09 -0.72 16 17 C -0.12 -4.10 7.88 22.53 0.18 -3.93 16 18 C -0.12 -3.10 10.03 22.23 0.22 -2.88 16 19 C -0.12 -3.03 9.69 22.34 0.22 -2.81 16 20 C -0.10 -2.99 5.50 -19.90 -0.11 -3.10 16 21 C 0.12 2.60 7.17 71.23 0.51 3.11 16 22 O -0.59 -13.53 13.64 -148.98 -2.03 -15.56 16 23 C -0.12 -4.30 9.16 22.53 0.21 -4.09 16 24 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 25 H 0.06 2.06 8.08 -2.39 -0.02 2.05 16 26 H 0.07 2.18 6.43 -2.39 -0.02 2.16 16 27 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 28 H 0.29 13.92 8.29 -92.71 -0.77 13.15 16 29 H 0.10 5.70 6.18 -2.91 -0.02 5.68 16 30 H 0.09 4.47 8.04 -2.91 -0.02 4.44 16 31 H 0.12 3.88 6.84 -2.91 -0.02 3.86 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 35 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 36 H 0.40 4.61 9.12 -74.06 -0.68 3.94 16 37 H 0.11 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -66.16 313.36 3.29 -62.87 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.41 Total: 31.01 kcal Atomic # 6 Polarization: -77.78 SS G_CDS: 2.65 Total: -75.13 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.24 Total: -43.55 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -2.03 Total: -15.56 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -66.16 3.29 -62.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241511525.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.697 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds