Wall clock time and date at job start Mon Mar 30 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38349 * 119.94057 * 2 1 4 4 C 1.38304 * 120.25481 * 179.97438 * 3 2 1 5 5 C 1.38036 * 120.12183 * 359.79042 * 4 3 2 6 6 C 1.50701 * 120.06248 * 180.25176 * 5 4 3 7 7 C 1.39356 * 119.87267 * 0.45988 * 5 4 3 8 8 C 1.48322 * 120.12258 * 179.79365 * 7 5 4 9 9 C 1.39435 * 120.05136 * 129.72364 * 8 7 5 10 10 C 1.37832 * 119.95011 * 179.97438 * 9 8 7 11 11 C 1.39001 * 120.05079 * 0.25180 * 10 9 8 12 12 O 1.35690 * 119.95118 * 179.74779 * 11 10 9 13 13 C 1.34823 * 117.00204 * 354.45117 * 12 11 10 14 14 H 1.08004 * 119.99170 * 5.05873 * 13 12 11 15 15 C 1.38641 * 120.00683 * 185.05870 * 13 12 11 16 16 N 1.31564 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00385 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47328 * 89.99827 * 17 15 13 19 19 H 1.48506 * 109.47335 * 210.00284 * 17 15 13 20 20 H 1.48500 * 109.47097 * 329.99694 * 17 15 13 21 21 C 1.39008 * 120.10415 * 359.49157 * 11 10 9 22 22 C 1.37838 * 120.04983 * 0.51322 * 21 11 10 23 23 C 1.37984 * 119.93593 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47461 * 270.02511 * 1 2 3 25 25 H 1.09002 * 109.47176 * 30.02136 * 1 2 3 26 26 H 1.08997 * 109.47325 * 150.02555 * 1 2 3 27 27 H 1.08002 * 119.87383 * 359.97059 * 3 2 1 28 28 H 1.07998 * 119.93946 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47129 * 270.21194 * 6 5 4 30 30 H 1.09009 * 109.47306 * 30.20588 * 6 5 4 31 31 H 1.08996 * 109.47228 * 150.20249 * 6 5 4 32 32 H 1.08002 * 120.02709 * 359.97438 * 9 8 7 33 33 H 1.08000 * 119.97964 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00365 * 180.02562 * 16 15 13 35 35 H 1.07998 * 119.97689 * 180.22674 * 21 11 10 36 36 H 1.07995 * 120.02716 * 179.76835 * 22 21 11 37 37 H 1.08006 * 120.06291 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1989 0.0000 4 6 3.5805 1.2064 0.0005 5 6 4.2797 0.0163 0.0054 6 6 5.7867 0.0262 0.0117 7 6 3.5895 -1.1943 0.0002 8 6 4.3353 -2.4764 0.0008 9 6 4.0158 -3.4696 0.9258 10 6 4.7099 -4.6604 0.9241 11 6 5.7312 -4.8696 0.0047 12 8 6.4165 -6.0407 0.0082 13 6 6.1364 -6.9109 0.9991 14 1 5.3388 -6.6976 1.6955 15 6 6.8721 -8.0793 1.1244 16 7 7.8440 -8.3387 0.2764 17 14 6.4835 -9.2852 2.4969 18 1 5.4736 -10.2655 2.0233 19 1 7.7226 -10.0024 2.8914 20 1 5.9454 -8.5464 3.6673 21 6 6.0480 -3.8830 -0.9219 22 6 5.3567 -2.6905 -0.9240 23 6 2.1956 -1.1957 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6544 2.1324 -0.0005 28 1 4.1144 2.1452 0.0010 29 1 6.1543 0.0306 -1.0144 30 1 6.1421 0.9176 0.5288 31 1 6.1537 -0.8624 0.5254 32 1 3.2251 -3.3060 1.6430 33 1 4.4631 -5.4299 1.6406 34 1 8.3585 -9.1563 0.3638 35 1 6.8394 -4.0491 -1.6377 36 1 5.6057 -1.9228 -1.6416 37 1 1.6555 -2.1311 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:10 Heat of formation + Delta-G solvation = -9.673069 kcal Electronic energy + Delta-G solvation = -19006.145445 eV Core-core repulsion = 16098.612567 eV Total energy + Delta-G solvation = -2907.532878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09980 -40.16830 -38.07504 -34.83952 -34.28481 -32.71841 -31.85876 -30.01611 -29.34233 -27.34481 -25.68581 -24.17023 -23.51666 -22.29453 -21.07067 -19.85831 -18.84060 -17.08521 -16.59779 -16.38120 -16.26043 -16.06040 -15.52246 -15.35751 -14.99337 -14.65880 -14.47213 -14.18607 -13.94197 -13.65440 -13.58267 -13.46847 -13.07799 -12.90455 -12.72585 -12.58230 -12.44305 -12.18702 -12.13030 -11.82818 -11.64784 -11.22379 -10.83106 -9.85294 -9.83740 -9.33661 -8.69737 -8.49193 -6.16991 0.14903 0.51160 0.56421 0.90966 1.34802 1.44146 1.52299 2.16547 2.72941 2.91873 3.15048 3.46667 3.79804 3.99491 4.03844 4.09434 4.14438 4.21803 4.39200 4.49887 4.56685 4.66302 4.77456 4.82126 4.84752 4.87984 4.96333 5.02153 5.10332 5.15291 5.19881 5.25582 5.42243 5.50857 5.56129 5.65687 5.67529 5.75409 5.89281 6.00052 6.13009 6.21436 6.95252 7.74338 8.73675 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.003913 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.318143 B = 7153.523900 C = 7698.979708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.115 4.115 7 C -0.038 4.038 8 C -0.128 4.128 9 C -0.056 4.056 10 C -0.240 4.240 11 C 0.120 3.880 12 O -0.227 6.227 13 C -0.416 4.416 14 H 0.102 0.898 15 C -0.021 4.021 16 N -0.919 5.919 17 Si 1.018 2.982 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.253 1.253 21 C -0.201 4.201 22 C -0.048 4.048 23 C -0.126 4.126 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.274 0.726 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 18.067 1.112 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.171 4.171 7 C -0.038 4.038 8 C -0.129 4.129 9 C -0.074 4.074 10 C -0.259 4.259 11 C 0.069 3.931 12 O -0.134 6.134 13 C -0.492 4.492 14 H 0.120 0.880 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.220 4.220 22 C -0.066 4.066 23 C -0.144 4.144 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.161 0.839 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.389 17.819 0.921 21.168 hybrid contribution 0.273 -1.131 0.405 1.232 sum -11.116 16.688 1.326 20.095 Atomic orbital electron populations 1.20811 0.89474 1.03467 1.02973 1.20128 0.97373 0.92653 0.99661 1.21341 0.94177 0.98112 1.00767 1.21217 0.94526 0.97550 1.00295 1.20157 0.96644 0.92374 1.00524 1.20885 0.90768 1.02758 1.02732 1.18681 0.93041 0.91377 1.00735 1.18558 1.00038 0.94621 0.99671 1.21035 0.97762 0.91320 0.97299 1.21169 1.00771 1.00287 1.03708 1.19972 0.91618 0.86675 0.94859 1.83927 1.57866 1.23546 1.48012 1.21845 1.19093 1.00089 1.08168 0.88038 1.26589 0.94823 0.99209 1.01231 1.70181 1.21044 1.26575 1.37840 0.84591 0.78365 0.76898 0.76399 1.18733 1.19496 1.17687 1.20379 1.05184 0.94017 1.02403 1.20983 0.93336 0.94997 0.97271 1.21234 0.92910 0.98428 1.01792 0.90473 0.90054 0.91583 0.83675 0.83808 0.90422 0.90164 0.92905 0.84861 0.85993 0.91737 0.86352 0.83907 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.95 16 2 C -0.10 -2.08 5.87 -19.90 -0.12 -2.20 16 3 C -0.13 -2.40 9.69 22.31 0.22 -2.18 16 4 C -0.12 -2.42 9.69 22.24 0.22 -2.20 16 5 C -0.10 -2.45 5.87 -19.64 -0.12 -2.57 16 6 C -0.12 -2.66 8.46 71.24 0.60 -2.06 16 7 C -0.04 -1.12 5.47 -20.05 -0.11 -1.23 16 8 C -0.13 -4.41 4.72 -20.02 -0.09 -4.50 16 9 C -0.06 -2.08 9.50 22.46 0.21 -1.86 16 10 C -0.24 -10.71 9.15 22.36 0.20 -10.51 16 11 C 0.12 6.02 6.65 22.64 0.15 6.18 16 12 O -0.23 -13.74 9.75 -22.00 -0.21 -13.96 16 13 C -0.42 -24.31 9.48 67.92 0.64 -23.67 16 14 H 0.10 5.45 5.19 -2.91 -0.02 5.43 16 15 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 16 N -0.92 -56.35 13.67 21.61 0.30 -56.05 16 17 Si 1.02 42.80 29.55 68.60 2.03 44.83 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 21 C -0.20 -8.67 9.98 22.36 0.22 -8.45 16 22 C -0.05 -1.70 7.91 22.46 0.18 -1.52 16 23 C -0.13 -3.29 9.16 22.49 0.21 -3.09 16 24 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.08 1.62 7.51 -2.39 -0.02 1.60 16 30 H 0.08 1.49 8.09 -2.38 -0.02 1.47 16 31 H 0.05 1.47 6.47 -2.39 -0.02 1.45 16 32 H 0.13 4.20 8.04 -2.91 -0.02 4.18 16 33 H 0.12 5.48 5.62 -2.91 -0.02 5.47 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.14 4.19 6.87 -2.91 -0.02 4.17 16 37 H 0.12 3.05 8.04 -2.91 -0.02 3.03 16 Total: -1.00 -69.41 314.02 6.78 -62.64 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.07 Total: 24.06 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 3.60 Total: -61.51 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.30 Total: -56.05 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.21 Total: -13.96 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -69.41 6.78 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.965 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds