Wall clock time and date at job start Mon Mar 30 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00215 * 2 1 4 4 C 1.38212 * 120.00470 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99792 * 359.76391 * 4 3 2 6 6 C 1.38218 * 119.99964 * 0.47002 * 5 4 3 7 7 C 1.50705 * 119.99958 * 179.78639 * 6 5 4 8 8 C 1.50698 * 109.46930 * 269.72418 * 7 6 5 9 9 C 1.38297 * 119.93202 * 89.99982 * 8 7 6 10 10 C 1.38101 * 120.07230 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.92536 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47375 * 119.99795 * 17 15 13 20 20 H 1.48506 * 109.47301 * 239.99793 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38110 * 119.92772 * 359.48927 * 21 11 10 23 23 C 1.38213 * 120.00165 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47017 * 270.01858 * 1 2 3 25 25 H 1.08997 * 109.46978 * 30.02605 * 1 2 3 26 26 H 1.09000 * 109.46758 * 150.02313 * 1 2 3 27 27 H 1.08002 * 119.99934 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.99851 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.00305 * 180.25274 * 5 4 3 30 30 H 1.09003 * 109.46768 * 149.72140 * 7 6 5 31 31 H 1.09004 * 109.46918 * 29.72297 * 7 6 5 32 32 H 1.07999 * 119.96698 * 0.02562 * 9 8 7 33 33 H 1.07992 * 120.03608 * 179.97438 * 10 9 8 34 34 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 35 35 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 36 36 H 1.07996 * 119.96227 * 180.23396 * 22 21 11 37 37 H 1.07998 * 119.99955 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0039 6 6 3.5807 -1.1969 -0.0010 7 6 4.3342 -2.5021 -0.0011 8 6 4.5844 -2.9375 -1.4219 9 6 5.7369 -2.5376 -2.0735 10 6 5.9688 -2.9346 -3.3757 11 6 5.0434 -3.7367 -4.0308 12 8 5.2688 -4.1289 -5.3107 13 6 6.4606 -3.8025 -5.8501 14 1 7.1522 -3.1838 -5.2976 15 6 6.7984 -4.2613 -7.1143 16 7 5.9562 -5.0153 -7.7872 17 14 8.4498 -3.8097 -7.8613 18 1 9.2080 -2.9593 -6.9089 19 1 9.2209 -5.0472 -8.1426 20 1 8.2333 -3.0630 -9.1266 21 6 3.8846 -4.1322 -3.3757 22 6 3.6607 -3.7359 -2.0717 23 6 2.1981 -1.1969 0.0005 24 1 -0.3633 0.0003 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6583 2.1327 -0.0004 28 1 4.1203 2.1327 -0.0010 29 1 5.3517 0.0000 0.0076 30 1 3.7455 -3.2615 0.5135 31 1 5.2870 -2.3715 0.5120 32 1 6.4563 -1.9143 -1.5633 33 1 6.8688 -2.6216 -3.8840 34 1 6.1923 -5.3359 -8.6717 35 1 3.1610 -4.7522 -3.8839 36 1 2.7615 -4.0463 -1.5605 37 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249870818.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:28 Heat of formation + Delta-G solvation = 5.155438 kcal Electronic energy + Delta-G solvation = -18849.074924 eV Core-core repulsion = 15942.185058 eV Total energy + Delta-G solvation = -2906.889866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58079 -38.80951 -36.67755 -33.58635 -32.34346 -31.92551 -30.17047 -29.30783 -26.93747 -25.96673 -24.88389 -22.27124 -21.74817 -21.05101 -19.96488 -17.96151 -16.92933 -16.41437 -15.38740 -14.90154 -14.71412 -14.52716 -14.36904 -13.78111 -13.60661 -13.49107 -13.19835 -12.99571 -12.74980 -12.59454 -12.34226 -11.95232 -11.77433 -11.47345 -11.42483 -11.11142 -10.86777 -10.73891 -10.58677 -10.52769 -10.41390 -9.31485 -8.82402 -8.67850 -8.46526 -8.16292 -7.13438 -6.44183 -4.02819 1.44835 1.48806 2.23439 2.35195 3.12646 3.14110 3.19677 3.85022 3.97398 4.54612 4.82857 4.88897 5.03845 5.11724 5.21019 5.29358 5.34632 5.38574 5.49860 5.53773 5.59862 5.70924 5.75941 5.80539 5.88873 5.99662 6.17043 6.19559 6.23106 6.43253 6.55364 6.63944 6.72377 6.76141 6.93089 7.07430 7.12962 7.26556 7.40500 7.45702 7.84489 8.01128 9.01682 9.72426 10.74063 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.003779 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.380902 B = 7408.103993 C = 7597.428108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.059 4.059 7 C -0.026 4.026 8 C -0.177 4.177 9 C -0.065 4.065 10 C -0.232 4.232 11 C 0.153 3.847 12 O -0.179 6.179 13 C -0.391 4.391 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.192 4.192 22 C -0.068 4.068 23 C -0.117 4.117 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 8.778 15.287 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.140 4.140 6 C -0.059 4.059 7 C -0.064 4.064 8 C -0.178 4.178 9 C -0.083 4.083 10 C -0.251 4.251 11 C 0.099 3.901 12 O -0.083 6.083 13 C -0.468 4.468 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.498 5.498 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.211 4.211 22 C -0.086 4.086 23 C -0.135 4.135 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.545 8.533 14.883 18.029 hybrid contribution 0.914 0.327 -0.518 1.100 sum -4.631 8.860 14.365 17.501 Atomic orbital electron populations 1.20773 0.91499 1.02740 1.01959 1.19875 0.95856 0.93259 0.99783 1.20933 0.94284 0.97250 1.02648 1.21072 0.94286 0.97855 1.00173 1.21012 0.99764 0.92026 1.01223 1.19956 0.93638 0.95180 0.97093 1.19375 0.99366 0.93129 0.94481 1.19078 0.97455 1.05516 0.95704 1.20573 0.95934 0.97778 0.94043 1.21144 1.02399 1.05487 0.96117 1.19393 0.93278 0.92003 0.85395 1.83977 1.35972 1.68066 1.20246 1.21376 0.92387 1.32472 1.00531 0.89049 1.25288 0.99509 0.96067 0.95680 1.70047 1.35210 1.32089 1.12476 0.85652 0.80168 0.78491 0.79147 1.19110 1.20134 1.20150 1.20193 0.98474 1.07234 0.95183 1.20464 0.97557 0.96934 0.93654 1.20898 0.93655 0.97409 1.01501 0.91468 0.91753 0.91528 0.86613 0.86424 0.86343 0.91019 0.91029 0.87705 0.85613 0.92094 0.86591 0.87282 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.09 -1.05 5.88 -104.63 -0.62 -1.67 16 3 C -0.13 -1.56 9.70 -39.58 -0.38 -1.94 16 4 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 5 C -0.12 -1.59 9.70 -39.58 -0.38 -1.98 16 6 C -0.06 -0.80 5.12 -104.62 -0.54 -1.33 16 7 C -0.03 -0.36 5.47 -29.03 -0.16 -0.52 16 8 C -0.18 -3.04 5.12 -104.58 -0.54 -3.57 16 9 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 10 C -0.23 -5.13 9.17 -39.39 -0.36 -5.50 16 11 C 0.15 3.76 6.65 -39.11 -0.26 3.50 16 12 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 13 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 14 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 17 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.19 -4.12 9.99 -39.39 -0.39 -4.52 16 22 C -0.07 -1.23 9.69 -39.60 -0.38 -1.61 16 23 C -0.12 -1.52 9.36 -39.58 -0.37 -1.89 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.07 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -31.18 320.81 -8.80 -39.98 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.76 Total: 4.36 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: -4.61 Total: -34.88 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.76 Total: -24.76 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.18 -8.80 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249870818.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.135 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds