Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 C 1.53000 * 109.46853 * 270.02160 * 14 13 12 16 16 C 1.50698 * 109.47212 * 180.02562 * 15 14 13 17 17 C 1.38237 * 119.99701 * 269.72828 * 16 15 14 18 18 C 1.38239 * 119.99964 * 179.76388 * 17 16 15 19 19 C 1.38237 * 119.99494 * 0.48521 * 18 17 16 20 20 C 1.38234 * 120.00272 * 359.78899 * 19 18 17 21 21 C 1.38230 * 120.00222 * 89.99709 * 16 15 14 22 22 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 23 23 C 1.38101 * 120.06877 * 359.97438 * 22 13 12 24 24 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 27 27 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 28 28 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 29 29 H 1.09007 * 109.47431 * 299.99803 * 15 14 13 30 30 H 1.08997 * 109.47534 * 59.99577 * 15 14 13 31 31 H 1.08000 * 120.00149 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99969 * 180.25199 * 18 17 16 33 33 H 1.08005 * 119.99545 * 179.76751 * 19 18 17 34 34 H 1.08005 * 119.99596 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.00253 * 0.02562 * 21 16 15 36 36 H 1.07999 * 119.96521 * 179.97438 * 22 13 12 37 37 H 1.07997 * 120.03156 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 6 6.2690 -6.7154 -0.9513 16 6 6.9525 -8.0532 -0.8330 17 6 8.3285 -8.1185 -0.7167 18 6 8.9551 -9.3454 -0.6032 19 6 8.2066 -10.5075 -0.6162 20 6 6.8312 -10.4425 -0.7381 21 6 6.2042 -9.2153 -0.8463 22 6 3.8530 -4.7987 0.2042 23 6 3.2232 -3.5745 0.0955 24 1 -0.4849 0.8401 0.0004 25 1 5.9419 -1.5655 0.2316 26 1 7.0536 -3.7518 0.4337 27 1 6.8234 -6.0908 1.0345 28 1 5.2448 -6.9070 0.9342 29 1 5.3589 -6.8238 -1.5415 30 1 6.9375 -6.0075 -1.4412 31 1 8.9136 -7.2107 -0.7110 32 1 10.0297 -9.3962 -0.5083 33 1 8.6965 -11.4663 -0.5313 34 1 6.2465 -11.3506 -0.7487 35 1 5.1296 -9.1646 -0.9419 36 1 3.2703 -5.7079 0.1941 37 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249947002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = 6.507598 kcal Electronic energy + Delta-G solvation = -18436.269037 eV Core-core repulsion = 15529.437806 eV Total energy + Delta-G solvation = -2906.831231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53146 -39.08801 -37.00538 -34.13832 -32.38212 -31.01199 -30.68632 -30.23095 -27.50115 -25.31728 -23.54587 -22.69945 -22.06310 -21.09115 -20.16744 -17.88174 -17.26115 -16.88915 -15.46303 -15.40443 -14.84670 -14.73371 -14.11866 -13.82264 -13.73912 -13.57343 -13.33471 -13.16943 -12.97179 -12.62410 -12.24612 -12.19251 -12.11886 -11.39176 -11.27483 -11.15160 -10.85106 -10.69873 -10.55580 -10.51321 -10.13936 -9.38416 -9.05294 -8.89690 -8.76670 -8.26560 -7.28492 -6.41976 -4.08583 1.23615 1.26901 2.12258 2.22052 3.22354 3.24940 3.39783 3.66744 4.23331 4.45872 4.71069 4.73177 4.85628 4.86917 4.99328 5.10434 5.16796 5.36200 5.42557 5.46280 5.59091 5.62386 5.71190 5.82709 5.86339 5.96277 6.00888 6.13539 6.28274 6.35148 6.36496 6.37818 6.57455 6.60206 6.80075 6.89155 7.05498 7.25397 7.31947 7.61650 7.79872 8.03798 8.93393 9.56176 10.65775 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.052614 B = 0.003023 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.055040 B = 9260.200530 C = 9667.905391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.157 3.843 11 C -0.191 4.191 12 C -0.073 4.073 13 C -0.175 4.175 14 C -0.054 4.054 15 C -0.079 4.079 16 C -0.074 4.074 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.070 4.070 23 C -0.219 4.219 24 H 0.279 0.721 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.501 -16.443 -0.878 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.105 3.895 11 C -0.210 4.210 12 C -0.092 4.092 13 C -0.175 4.175 14 C -0.092 4.092 15 C -0.116 4.116 16 C -0.074 4.074 17 C -0.137 4.137 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.088 4.088 23 C -0.239 4.239 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.370 -16.065 -0.897 21.573 hybrid contribution 0.065 0.630 -0.022 0.633 sum 14.435 -15.435 -0.919 21.154 Atomic orbital electron populations 1.69648 1.05569 1.28477 1.48146 1.24471 0.95031 0.98834 0.95701 0.86174 0.80321 0.81424 0.78947 1.19892 1.20817 1.18357 1.20771 0.76927 0.96618 1.52187 0.87653 1.83569 1.22585 1.25784 1.80437 1.19134 0.91721 0.85509 0.93106 1.20207 0.91970 0.97872 1.10993 1.20503 0.98294 0.91367 0.98992 1.19335 0.93601 0.94043 1.10560 1.20289 0.99640 0.93875 0.95367 1.20702 1.00364 0.92326 0.98208 1.20086 0.93713 0.95560 0.98018 1.21101 0.94244 0.97802 1.00577 1.21137 0.99722 0.92668 1.00296 1.21108 0.94227 0.98217 1.01423 1.21144 0.94788 0.97672 1.00172 1.21114 0.99962 0.92071 1.00530 1.20667 0.93572 0.96656 0.97892 1.21278 1.01105 0.91901 1.09570 0.91060 0.86613 0.87029 0.91888 0.91857 0.90842 0.90880 0.86089 0.86317 0.86444 0.86287 0.86035 0.87351 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.48 0.77 -24.72 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.72 28.62 -169.99 -4.86 16.86 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -11.00 9.95 30.89 0.31 -10.70 16 8 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 9 O -0.22 -5.79 8.59 0.05 0.00 -5.79 16 10 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.19 -3.77 9.99 -39.39 -0.39 -4.17 16 12 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 13 C -0.17 -2.81 5.14 -104.57 -0.54 -3.35 16 14 C -0.05 -0.69 5.32 -27.88 -0.15 -0.84 16 15 C -0.08 -0.91 5.33 -27.88 -0.15 -1.06 16 16 C -0.07 -0.81 5.13 -104.63 -0.54 -1.35 16 17 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 18 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 19 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 20 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 21 C -0.12 -1.23 9.70 -39.59 -0.38 -1.62 16 22 C -0.07 -1.24 9.69 -39.61 -0.38 -1.63 16 23 C -0.22 -4.72 9.17 -39.40 -0.36 -5.08 16 24 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.34 16 28 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.07 0.87 8.09 -51.92 -0.42 0.45 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -29.62 319.77 -8.95 -38.57 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.78 Total: 2.80 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -4.90 Total: -32.54 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.77 Total: -24.72 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.00 Total: -5.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.86 Total: 16.86 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.62 -8.95 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249947002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.077 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds