Wall clock time and date at job start Mon Mar 30 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38105 * 119.92781 * 179.76650 * 11 10 9 13 13 C 1.38304 * 120.06646 * 0.48744 * 12 11 10 14 14 C 1.50707 * 119.92974 * 179.74714 * 13 12 11 15 15 C 1.53000 * 109.46853 * 270.02160 * 14 13 12 16 16 C 1.50698 * 109.47212 * 180.02562 * 15 14 13 17 17 C 1.38237 * 119.99701 * 269.72828 * 16 15 14 18 18 C 1.38239 * 119.99964 * 179.76388 * 17 16 15 19 19 C 1.38237 * 119.99494 * 0.48521 * 18 17 16 20 20 C 1.38234 * 120.00272 * 359.78899 * 19 18 17 21 21 C 1.38230 * 120.00222 * 89.99709 * 16 15 14 22 22 C 1.38302 * 120.13995 * 359.76849 * 13 12 11 23 23 C 1.38101 * 120.06877 * 359.97438 * 22 13 12 24 24 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.96589 * 180.23432 * 12 11 10 27 27 H 1.09002 * 109.47040 * 30.01809 * 14 13 12 28 28 H 1.08995 * 109.46954 * 150.02268 * 14 13 12 29 29 H 1.09007 * 109.47431 * 299.99803 * 15 14 13 30 30 H 1.08997 * 109.47534 * 59.99577 * 15 14 13 31 31 H 1.08000 * 120.00149 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.99969 * 180.25199 * 18 17 16 33 33 H 1.08005 * 119.99545 * 179.76751 * 19 18 17 34 34 H 1.08005 * 119.99596 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.00253 * 0.02562 * 21 16 15 36 36 H 1.07999 * 119.96521 * 179.97438 * 22 13 12 37 37 H 1.07997 * 120.03156 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9791 -3.6994 0.3388 13 6 5.2293 -4.8615 0.3260 14 6 5.9134 -6.1991 0.4444 15 6 6.2690 -6.7154 -0.9513 16 6 6.9525 -8.0532 -0.8330 17 6 8.3285 -8.1185 -0.7167 18 6 8.9551 -9.3454 -0.6032 19 6 8.2066 -10.5075 -0.6162 20 6 6.8312 -10.4425 -0.7381 21 6 6.2042 -9.2153 -0.8463 22 6 3.8530 -4.7987 0.2042 23 6 3.2232 -3.5745 0.0955 24 1 -0.4849 0.8401 0.0004 25 1 5.9419 -1.5655 0.2316 26 1 7.0536 -3.7518 0.4337 27 1 6.8234 -6.0908 1.0345 28 1 5.2448 -6.9070 0.9342 29 1 5.3589 -6.8238 -1.5415 30 1 6.9375 -6.0075 -1.4412 31 1 8.9136 -7.2107 -0.7110 32 1 10.0297 -9.3962 -0.5083 33 1 8.6965 -11.4663 -0.5313 34 1 6.2465 -11.3506 -0.7487 35 1 5.1296 -9.1646 -0.9419 36 1 3.2703 -5.7079 0.1941 37 1 2.1485 -3.5262 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249947002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:04 Heat of formation + Delta-G solvation = -7.408318 kcal Electronic energy + Delta-G solvation = -18436.872477 eV Core-core repulsion = 15529.437806 eV Total energy + Delta-G solvation = -2907.434671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92875 -40.10932 -38.59926 -35.24155 -34.38623 -31.90563 -31.73412 -31.68689 -28.77677 -27.13667 -24.72212 -23.69560 -23.35620 -22.11210 -21.44157 -19.80224 -19.08730 -17.58922 -16.73363 -16.50489 -16.14067 -15.89425 -15.70590 -15.59355 -15.23430 -14.58342 -14.36275 -14.26023 -14.18438 -14.11197 -13.79069 -13.63500 -13.20662 -12.83811 -12.50288 -12.42351 -12.21653 -12.03265 -11.94386 -11.59804 -11.56739 -11.23775 -10.89654 -9.79776 -9.75411 -9.56660 -8.92510 -8.50449 -6.22913 0.48019 0.56693 0.57268 0.69744 1.30987 1.35626 1.51404 2.27764 2.75362 2.94742 3.05823 3.18852 3.82168 3.97429 4.09869 4.16890 4.22635 4.31043 4.37288 4.39841 4.57342 4.63264 4.64416 4.72418 4.77802 4.83410 5.00196 5.06164 5.20084 5.24885 5.29484 5.36499 5.41766 5.59687 5.65411 5.69152 5.76457 5.79908 5.87848 5.92392 6.20183 6.26773 6.83994 7.59165 8.61354 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.052614 B = 0.003023 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.055040 B = 9260.200530 C = 9667.905391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.114 3.886 11 C -0.190 4.190 12 C -0.066 4.066 13 C -0.147 4.147 14 C -0.050 4.050 15 C -0.072 4.072 16 C -0.089 4.089 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.073 4.073 23 C -0.237 4.237 24 H 0.285 0.715 25 H 0.128 0.872 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.857 -18.123 -0.608 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.065 3.935 11 C -0.209 4.209 12 C -0.084 4.084 13 C -0.148 4.148 14 C -0.087 4.087 15 C -0.109 4.109 16 C -0.089 4.089 17 C -0.147 4.147 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.091 4.091 23 C -0.256 4.256 24 H 0.094 0.906 25 H 0.146 0.854 26 H 0.173 0.827 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.753 -17.788 -0.628 25.139 hybrid contribution -0.764 0.764 -0.092 1.084 sum 16.989 -17.024 -0.719 24.061 Atomic orbital electron populations 1.69734 1.06930 1.29593 1.50320 1.25301 0.95902 1.02215 0.95554 0.85194 0.78773 0.77312 0.79297 1.19037 1.19218 1.18670 1.20709 0.78200 0.96078 1.52580 0.90287 1.83509 1.21138 1.27510 1.83281 1.19697 0.93301 0.85051 0.95411 1.20546 0.90499 0.99903 1.09999 1.21001 1.00459 0.90024 0.96915 1.19838 0.92839 0.95964 1.06165 1.20332 1.00137 0.91593 0.96640 1.20573 1.00254 0.93004 0.97081 1.20048 0.94211 0.95156 0.99436 1.21317 0.94077 0.98793 1.00541 1.21452 1.00944 0.92420 0.99652 1.21457 0.94223 0.99276 1.00426 1.21425 0.95392 0.98027 0.99785 1.21297 1.00386 0.92533 1.00953 1.20961 0.94894 0.96026 0.97235 1.21285 1.00106 0.93345 1.10844 0.90581 0.85398 0.82713 0.90076 0.91123 0.91548 0.90618 0.84983 0.84293 0.84322 0.84614 0.85691 0.84910 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.96 21.61 0.30 -55.62 16 2 C 0.01 0.49 5.49 84.83 0.47 0.96 16 3 Si 0.97 45.92 28.62 68.60 1.96 47.88 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.40 -23.91 9.95 67.92 0.68 -23.24 16 8 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 9 O -0.25 -13.60 8.59 -22.72 -0.20 -13.80 16 10 C 0.11 5.40 6.65 22.58 0.15 5.55 16 11 C -0.19 -7.26 9.99 22.39 0.22 -7.04 16 12 C -0.07 -1.98 9.69 22.25 0.22 -1.77 16 13 C -0.15 -4.31 5.14 -19.83 -0.10 -4.41 16 14 C -0.05 -1.07 5.32 29.85 0.16 -0.91 16 15 C -0.07 -1.44 5.33 29.85 0.16 -1.28 16 16 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 17 C -0.13 -2.23 9.70 22.27 0.22 -2.01 16 18 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 19 C -0.14 -2.01 10.05 22.27 0.22 -1.79 16 20 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 21 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 22 C -0.07 -2.54 9.69 22.25 0.22 -2.32 16 23 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 24 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 25 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 26 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 27 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 28 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.07 1.42 8.09 -2.38 -0.02 1.40 16 30 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 31 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 32 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 Total: -1.00 -67.27 319.77 6.49 -60.77 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.05 Total: 16.97 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 3.37 Total: -56.20 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.30 Total: -55.62 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.20 Total: -13.80 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.96 Total: 47.88 kcal Total: -67.27 6.49 -60.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249947002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.365 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds