Wall clock time and date at job start Mon Mar 30 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.37774 * 119.99912 * 275.00211 * 13 3 2 15 15 N 1.30230 * 120.00314 * 359.97438 * 14 13 3 16 16 C 1.48098 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.39432 * 120.10743 * 359.72647 * 16 14 13 18 18 C 1.38243 * 119.88656 * 179.72021 * 17 16 14 19 19 F 1.35096 * 119.94343 * 180.27466 * 18 17 16 20 20 C 1.38507 * 120.10566 * 0.55187 * 18 17 16 21 21 C 1.38514 * 120.22617 * 359.71901 * 20 18 17 22 22 F 1.35098 * 119.94583 * 179.97438 * 21 20 18 23 23 C 1.38231 * 120.10740 * 0.02562 * 21 20 18 24 24 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 31 31 H 0.97003 * 119.99992 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.05998 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.88426 * 179.74254 * 20 18 17 34 34 H 1.07994 * 120.05779 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4081 2.6770 1.3695 15 7 -0.4235 2.6430 0.3678 16 6 0.0161 3.3387 2.6351 17 6 0.9024 3.3715 3.7109 18 6 0.5340 3.9954 4.8882 19 9 1.3940 4.0327 5.9294 20 6 -0.7176 4.5773 5.0040 21 6 -1.6038 4.5425 3.9400 22 9 -2.8234 5.1114 4.0593 23 6 -1.2429 3.9256 2.7568 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0607 -2.9502 30 1 2.2720 2.1231 1.9978 31 1 -1.2995 3.0513 0.4505 32 1 1.8767 2.9138 3.6233 33 1 -1.0033 5.0601 5.9268 34 1 -1.9343 3.8993 1.9277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:00 Heat of formation + Delta-G solvation = -39.540536 kcal Electronic energy + Delta-G solvation = -19915.231655 eV Core-core repulsion = 16484.466848 eV Total energy + Delta-G solvation = -3430.764807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.22550 -49.17884 -39.43933 -36.98018 -34.03532 -31.87589 -31.14304 -30.22460 -29.93428 -26.75197 -24.11601 -23.01858 -22.62628 -20.48576 -19.42581 -18.54298 -17.24889 -16.60456 -16.58363 -16.18567 -15.81049 -15.49900 -15.36348 -14.92046 -14.53982 -14.46128 -13.81902 -13.32045 -12.92364 -12.59717 -12.33493 -12.09849 -11.95267 -11.55043 -11.18406 -11.00697 -10.90953 -10.61763 -10.21400 -10.01898 -9.55073 -9.05626 -9.00282 -8.92353 -8.65408 -8.35863 -7.15046 -6.08059 -4.16566 0.53346 0.74709 2.79871 3.26280 3.33490 3.35204 3.54017 3.78357 3.94216 4.17756 4.36395 4.49312 4.55380 4.82528 4.91135 5.23606 5.38408 5.53676 5.71046 5.74304 5.82761 6.37695 6.49440 6.51857 6.58116 6.80953 7.14919 7.30718 7.50089 7.66012 7.74132 7.91656 8.08879 8.32871 8.56144 8.85196 9.23078 9.50051 10.97016 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.004829 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.184151 B = 5796.821903 C = 6574.718081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.126 4.126 3 C 0.284 3.716 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.692 5.692 14 C 0.443 3.557 15 N -0.749 5.749 16 C -0.030 4.030 17 C -0.142 4.142 18 C 0.133 3.867 19 F -0.130 7.130 20 C -0.191 4.191 21 C 0.133 3.867 22 F -0.130 7.130 23 C -0.147 4.147 24 H 0.054 0.946 25 H 0.013 0.987 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.390 0.610 31 H 0.327 0.673 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 6.388 12.469 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.182 3.818 4 H 0.074 0.926 5 C -0.573 4.573 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.328 5.328 14 C 0.160 3.840 15 N -0.383 5.383 16 C -0.036 4.036 17 C -0.163 4.163 18 C 0.113 3.887 19 F -0.108 7.108 20 C -0.211 4.211 21 C 0.114 3.886 22 F -0.109 7.109 23 C -0.168 4.168 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.143 0.857 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.385 5.838 11.165 14.604 hybrid contribution 0.654 0.604 1.273 1.554 sum -6.730 6.442 12.438 15.541 Atomic orbital electron populations 1.21828 0.98271 0.97225 1.01460 1.21938 0.92806 1.00022 1.01788 1.18724 0.93422 0.88911 0.80753 0.92624 1.21281 0.91121 1.38768 1.06128 0.92353 1.24846 0.98333 0.94925 0.95452 1.69898 1.34948 1.37741 1.09318 0.86511 0.85231 0.78380 0.77330 1.20632 1.21134 1.19944 1.45143 1.10934 1.58227 1.18545 1.19726 0.88939 0.89324 0.85992 1.69747 1.08448 1.31382 1.28705 1.19913 0.92686 0.96003 0.94984 1.21403 1.01910 1.01395 0.91598 1.17160 0.87600 0.99014 0.84878 1.91546 1.68735 1.94515 1.55996 1.21044 0.93568 1.05784 1.00694 1.17024 0.81084 0.96417 0.94112 1.91539 1.40553 1.82398 1.96392 1.21180 0.97512 1.00410 0.97736 0.92685 0.96770 0.94278 0.88617 0.95552 0.92681 0.77513 0.85659 0.83334 0.83354 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.45 37.16 0.31 -2.46 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.28 6.84 2.24 -69.08 -0.15 6.68 16 4 H 0.06 1.54 7.53 -51.93 -0.39 1.15 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.35 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.69 -13.53 5.07 -53.19 -0.27 -13.80 16 14 C 0.44 7.77 6.39 -154.31 -0.99 6.78 16 15 N -0.75 -13.90 10.11 32.53 0.33 -13.58 16 16 C -0.03 -0.42 5.87 -104.96 -0.62 -1.04 16 17 C -0.14 -1.78 9.53 -39.14 -0.37 -2.15 16 18 C 0.13 1.53 7.29 -39.48 -0.29 1.24 16 19 F -0.13 -1.51 17.26 2.25 0.04 -1.47 16 20 C -0.19 -1.99 10.00 -39.38 -0.39 -2.38 16 21 C 0.13 1.50 7.29 -39.48 -0.29 1.21 16 22 F -0.13 -1.46 17.26 2.25 0.04 -1.42 16 23 C -0.15 -1.80 9.49 -39.14 -0.37 -2.17 16 24 H 0.05 1.23 7.70 -51.93 -0.40 0.83 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.79 5.60 -51.93 -0.29 0.50 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.80 6.64 -40.82 -0.27 6.53 16 31 H 0.33 5.16 6.76 -40.82 -0.28 4.88 16 32 H 0.15 1.74 6.41 -52.49 -0.34 1.41 16 33 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.15 1.62 6.40 -52.49 -0.34 1.28 16 LS Contribution 291.26 15.07 4.39 4.39 Total: -1.00 -27.60 291.26 -6.99 -34.59 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.42 Total: 9.46 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.70 Total: -9.86 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.69 Total: -51.11 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.60 -6.99 -34.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.954 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds