Wall clock time and date at job start Mon Mar 30 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.37774 * 119.99912 * 275.00211 * 13 3 2 15 15 N 1.30230 * 120.00314 * 359.97438 * 14 13 3 16 16 C 1.48098 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.39432 * 120.10743 * 359.72647 * 16 14 13 18 18 C 1.38243 * 119.88656 * 179.72021 * 17 16 14 19 19 F 1.35096 * 119.94343 * 180.27466 * 18 17 16 20 20 C 1.38507 * 120.10566 * 0.55187 * 18 17 16 21 21 C 1.38514 * 120.22617 * 359.71901 * 20 18 17 22 22 F 1.35098 * 119.94583 * 179.97438 * 21 20 18 23 23 C 1.38231 * 120.10740 * 0.02562 * 21 20 18 24 24 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 28 28 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 30 30 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 31 31 H 0.97003 * 119.99992 * 180.02562 * 15 14 13 32 32 H 1.07998 * 120.05998 * 359.97438 * 17 16 14 33 33 H 1.08002 * 119.88426 * 179.74254 * 20 18 17 34 34 H 1.07994 * 120.05779 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4081 2.6770 1.3695 15 7 -0.4235 2.6430 0.3678 16 6 0.0161 3.3387 2.6351 17 6 0.9024 3.3715 3.7109 18 6 0.5340 3.9954 4.8882 19 9 1.3940 4.0327 5.9294 20 6 -0.7176 4.5773 5.0040 21 6 -1.6038 4.5425 3.9400 22 9 -2.8234 5.1114 4.0593 23 6 -1.2429 3.9256 2.7568 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0607 -2.9502 30 1 2.2720 2.1231 1.9978 31 1 -1.2995 3.0513 0.4505 32 1 1.8767 2.9138 3.6233 33 1 -1.0033 5.0601 5.9268 34 1 -1.9343 3.8993 1.9277 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:00 Heat of formation + Delta-G solvation = -54.405001 kcal Electronic energy + Delta-G solvation = -19915.876227 eV Core-core repulsion = 16484.466848 eV Total energy + Delta-G solvation = -3431.409379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.11029 -50.08013 -40.54602 -38.45017 -35.68254 -33.63366 -32.54170 -31.47952 -31.07626 -28.61227 -25.43157 -24.51443 -23.76715 -21.99205 -21.08267 -19.73441 -18.31746 -18.18890 -17.56375 -17.08657 -17.00792 -16.69377 -16.38928 -16.34453 -16.19022 -15.49811 -15.36246 -14.90845 -14.46401 -13.84470 -13.62502 -13.36651 -13.08389 -13.01715 -12.88181 -12.75012 -12.65264 -12.21037 -12.05223 -11.81871 -11.41333 -10.88430 -10.46666 -10.05214 -9.99023 -9.92915 -8.74108 -8.08793 -6.24125 -0.44949 -0.18160 1.46558 1.47442 1.56973 1.70655 2.36196 2.53815 2.57507 2.80820 3.20458 3.21895 3.44541 3.63531 3.86805 3.92165 4.34428 4.60693 4.66413 4.72007 4.75349 4.79597 4.84569 4.92089 5.14530 5.27158 5.45220 5.57780 5.62963 5.69546 5.91722 5.99785 6.23064 6.56317 6.92493 6.95654 7.45323 7.85846 8.95833 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024402 B = 0.004829 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.184151 B = 5796.821903 C = 6574.718081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C 0.295 3.705 4 H 0.013 0.987 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.697 5.697 14 C 0.445 3.555 15 N -0.780 5.780 16 C -0.046 4.046 17 C -0.140 4.140 18 C 0.132 3.868 19 F -0.129 7.129 20 C -0.170 4.170 21 C 0.133 3.867 22 F -0.128 7.128 23 C -0.142 4.142 24 H 0.038 0.962 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.401 0.599 31 H 0.340 0.660 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 7.192 14.519 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.160 4.160 3 C 0.191 3.809 4 H 0.031 0.969 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.788 3.212 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.335 5.335 14 C 0.163 3.837 15 N -0.415 5.415 16 C -0.051 4.051 17 C -0.161 4.161 18 C 0.112 3.888 19 F -0.107 7.107 20 C -0.190 4.190 21 C 0.114 3.886 22 F -0.106 7.106 23 C -0.163 4.163 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.237 0.763 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.468 6.661 13.247 16.602 hybrid contribution 0.595 0.418 0.693 1.005 sum -6.872 7.079 13.940 17.078 Atomic orbital electron populations 1.21655 0.96441 0.98037 1.01117 1.21792 0.94372 0.99555 1.00285 1.18232 0.92443 0.88793 0.81407 0.96876 1.21656 0.92277 1.38387 1.06280 0.91700 1.25654 1.02629 0.94679 0.95232 1.70047 1.36655 1.38604 1.09805 0.85497 0.80038 0.78637 0.77041 1.20003 1.21342 1.19172 1.44801 1.12274 1.58935 1.17466 1.19853 0.87805 0.88623 0.87404 1.69679 1.09488 1.32240 1.30084 1.19475 0.93941 0.97880 0.93809 1.21438 1.01823 1.01177 0.91662 1.17094 0.88007 0.99169 0.84511 1.91555 1.68816 1.94522 1.55815 1.21299 0.92496 1.03955 1.01269 1.16952 0.81327 0.96403 0.93923 1.91554 1.40418 1.82313 1.96339 1.21237 0.96871 0.99738 0.98472 0.94312 0.95289 0.93224 0.91656 0.95317 0.92838 0.76298 0.84225 0.82993 0.80618 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 8.45 71.98 0.61 -4.31 16 2 C -0.12 -5.83 5.45 30.59 0.17 -5.66 16 3 C 0.29 14.53 2.24 44.24 0.10 14.63 16 4 H 0.01 0.77 7.53 -2.39 -0.02 0.75 16 5 C -0.55 -28.60 8.73 25.60 0.22 -28.37 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -51.69 11.29 21.45 0.24 -51.45 16 9 Si 0.96 42.07 29.54 68.60 2.03 44.09 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.70 -27.31 5.07 -322.20 -1.63 -28.94 16 14 C 0.44 15.48 6.39 136.52 0.87 16.36 16 15 N -0.78 -29.13 10.11 -50.99 -0.52 -29.64 16 16 C -0.05 -1.21 5.87 -20.08 -0.12 -1.33 16 17 C -0.14 -3.25 9.53 22.56 0.21 -3.03 16 18 C 0.13 2.66 7.29 22.34 0.16 2.83 16 19 F -0.13 -2.65 17.26 44.97 0.78 -1.87 16 20 C -0.17 -2.97 10.00 22.40 0.22 -2.74 16 21 C 0.13 2.62 7.29 22.33 0.16 2.79 16 22 F -0.13 -2.50 17.26 44.97 0.78 -1.73 16 23 C -0.14 -3.20 9.49 22.56 0.21 -2.99 16 24 H 0.04 1.76 7.70 -2.39 -0.02 1.74 16 25 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 1.99 5.60 -2.39 -0.01 1.98 16 27 H 0.07 3.57 5.95 -2.39 -0.01 3.56 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.40 13.80 6.64 -92.70 -0.62 13.18 16 31 H 0.34 10.67 6.76 -92.71 -0.63 10.04 16 32 H 0.15 3.35 6.41 -2.91 -0.02 3.33 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 3.16 6.40 -2.91 -0.02 3.14 16 Total: -1.00 -59.41 291.26 4.87 -54.54 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.08 Total: 25.42 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.28 Total: -10.42 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -1.91 Total: -110.03 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.55 Total: -3.60 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.41 4.87 -54.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.134 kcal (2) G-P(sol) polarization free energy of solvation -59.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds