Wall clock time and date at job start Mon Mar 30 2020 00:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 C 1.50700 * 109.47030 * 119.99728 * 2 1 3 5 5 N 1.31133 * 126.55299 * 119.97503 * 4 2 1 6 6 C 1.34496 * 105.61919 * 179.97438 * 5 4 2 7 7 C 1.50698 * 126.28969 * 180.26865 * 6 5 4 8 8 O 1.45206 * 109.46605 * 269.71035 * 7 6 5 9 9 C 1.34228 * 116.99410 * 180.02562 * 8 7 6 10 10 O 1.20826 * 120.00312 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99442 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47511 * 59.99526 * 11 9 8 13 13 C 1.52995 * 109.46754 * 299.99160 * 11 9 8 14 14 C 1.50704 * 109.46916 * 179.97438 * 11 9 8 15 15 H 1.08001 * 120.00029 * 35.09030 * 14 11 9 16 16 C 1.37880 * 119.99891 * 215.10349 * 14 11 9 17 17 N 1.31510 * 119.99895 * 184.90684 * 16 14 11 18 18 Si 1.86800 * 119.99818 * 4.90210 * 16 14 11 19 19 H 1.48506 * 109.46849 * 84.83033 * 18 16 14 20 20 H 1.48498 * 109.47266 * 204.82471 * 18 16 14 21 21 H 1.48491 * 109.47499 * 324.82896 * 18 16 14 22 22 N 1.29955 * 107.42150 * 0.02562 * 6 5 4 23 23 O 1.21305 * 110.24895 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.47404 * 300.00431 * 1 2 3 25 25 H 1.09004 * 109.47365 * 60.00369 * 1 2 3 26 26 H 1.09003 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47404 * 239.99569 * 2 1 3 28 28 H 1.08991 * 109.47733 * 60.00013 * 3 2 1 29 29 H 1.09004 * 109.47017 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46941 * 299.99262 * 3 2 1 31 31 H 1.09001 * 109.47078 * 29.70727 * 7 6 5 32 32 H 1.08998 * 109.47089 * 149.71081 * 7 6 5 33 33 H 1.09009 * 109.47273 * 175.06613 * 13 11 9 34 34 H 1.08998 * 109.47615 * 295.06102 * 13 11 9 35 35 H 1.09000 * 109.47511 * 55.06656 * 13 11 9 36 36 H 0.97001 * 119.99850 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7888 -1.7810 1.2601 6 6 2.9816 -2.0523 2.5632 7 6 3.7931 -3.1903 3.1268 8 8 2.9376 -4.3486 3.3136 9 6 3.5107 -5.4551 3.8125 10 8 4.6881 -5.4560 4.0837 11 6 2.6856 -6.6968 4.0332 12 1 2.2616 -7.0249 3.0842 13 6 1.5556 -6.3898 5.0179 14 6 3.5602 -7.7876 4.5959 15 1 4.3601 -7.5404 5.2782 16 6 3.3395 -9.1010 4.2393 17 7 4.0384 -10.0618 4.8031 18 14 2.0474 -9.5157 2.9555 19 1 2.6397 -9.3922 1.5993 20 1 1.5721 -10.9072 3.1631 21 1 0.9035 -8.5776 3.0834 22 7 2.3439 -1.1498 3.2470 23 8 1.7920 -0.3694 2.5002 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 4.5975 -3.4404 2.4350 32 1 4.2176 -2.8937 4.0858 33 1 0.9076 -7.2614 5.1106 34 1 1.9789 -6.1466 5.9925 35 1 0.9752 -5.5427 4.6523 36 1 3.8828 -10.9859 4.5525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327136705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:04 Heat of formation + Delta-G solvation = -53.730565 kcal Electronic energy + Delta-G solvation = -20039.189887 eV Core-core repulsion = 16718.897270 eV Total energy + Delta-G solvation = -3320.292617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.89706 -41.56011 -38.03110 -37.37648 -36.55891 -35.87216 -33.54295 -32.86848 -29.74249 -28.08375 -27.35593 -25.50191 -25.26877 -24.18350 -21.65684 -21.44912 -19.45403 -19.29536 -18.70512 -18.21692 -17.66038 -17.48214 -16.76985 -16.22614 -15.53054 -15.18912 -14.74773 -14.55588 -14.28147 -14.16861 -14.09061 -13.70412 -13.19050 -13.05278 -13.03251 -12.87348 -12.74525 -12.68398 -12.34404 -12.31482 -12.24286 -11.99837 -11.87839 -11.81935 -11.40575 -11.30442 -11.05108 -10.81838 -8.36347 -6.46376 -0.09366 0.70559 1.23939 1.36223 1.37725 1.47940 1.67061 1.78303 2.29505 2.43875 2.73210 3.01173 3.58436 3.81030 3.88895 4.01879 4.02782 4.14959 4.24935 4.27305 4.54704 4.59829 4.71867 4.74464 4.81107 4.91577 4.93481 4.99356 5.09467 5.20204 5.34664 5.35093 5.41192 5.41759 6.15674 6.62433 6.83793 6.94132 7.17790 8.80280 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032275 B = 0.003876 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.328646 B = 7222.516051 C = 7602.020011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.001 3.999 3 C -0.148 4.148 4 C 0.198 3.802 5 N -0.494 5.494 6 C 0.158 3.842 7 C 0.152 3.848 8 O -0.359 6.359 9 C 0.474 3.526 10 O -0.530 6.530 11 C 0.022 3.978 12 H 0.082 0.918 13 C -0.128 4.128 14 C -0.521 4.521 15 H 0.034 0.966 16 C 0.019 3.981 17 N -0.939 5.939 18 Si 0.939 3.061 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.229 1.229 22 N -0.378 5.378 23 O 0.097 5.903 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 23.715 -13.052 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 C -0.206 4.206 4 C -0.022 4.022 5 N -0.227 5.227 6 C -0.114 4.114 7 C 0.077 3.923 8 O -0.275 6.275 9 C 0.318 3.682 10 O -0.417 6.417 11 C 0.003 3.997 12 H 0.099 0.901 13 C -0.186 4.186 14 C -0.558 4.558 15 H 0.053 0.947 16 C -0.179 4.179 17 N -0.577 5.577 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.152 1.152 22 N -0.083 5.083 23 O 0.033 5.967 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.948 23.163 -12.214 28.012 hybrid contribution 0.403 -0.686 -0.046 0.797 sum -9.545 22.477 -12.259 27.324 Atomic orbital electron populations 1.21960 0.90632 1.03071 1.05135 1.20278 0.98116 0.96561 0.86982 1.21949 1.01534 0.91988 1.05115 1.29896 0.92005 0.91008 0.89312 1.71901 1.18075 1.14507 1.18192 1.25131 1.01246 0.98474 0.86555 1.20805 0.89756 0.79540 1.02183 1.86581 1.43499 1.21041 1.76427 1.25037 0.87824 0.83816 0.71524 1.90552 1.18969 1.83736 1.48442 1.19192 0.94364 0.86993 0.99185 0.90080 1.21841 0.96645 1.01683 0.98442 1.20795 1.16228 0.90719 1.28054 0.94732 1.25956 0.98394 0.95477 0.98110 1.70023 1.42830 1.00847 1.43975 0.85866 0.80261 0.78801 0.79056 1.19029 1.20208 1.15162 1.74667 1.11192 1.04296 1.18186 1.85253 1.53230 1.42138 1.16113 0.91258 0.87541 0.92884 0.85501 0.91253 0.92516 0.87642 0.87664 0.88126 0.91283 0.93524 0.91583 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.17 71.98 0.66 -0.46 16 2 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 3 C -0.15 -0.93 9.17 71.98 0.66 -0.27 16 4 C 0.20 4.11 7.02 88.38 0.62 4.73 16 5 N -0.49 -13.91 11.55 -303.15 -3.50 -17.41 16 6 C 0.16 4.96 7.86 138.46 1.09 6.05 16 7 C 0.15 5.20 6.09 71.24 0.43 5.63 16 8 O -0.36 -14.30 10.01 -51.40 -0.51 -14.82 16 9 C 0.47 22.12 7.25 71.24 0.52 22.64 16 10 O -0.53 -27.92 15.52 21.96 0.34 -27.58 16 11 C 0.02 1.06 2.40 -12.28 -0.03 1.03 16 12 H 0.08 3.62 5.29 -2.39 -0.01 3.61 16 13 C -0.13 -5.19 9.14 71.98 0.66 -4.53 16 14 C -0.52 -30.53 8.36 25.60 0.21 -30.32 16 15 H 0.03 2.34 7.62 -2.91 -0.02 2.32 16 16 C 0.02 1.12 5.47 84.66 0.46 1.58 16 17 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 18 Si 0.94 41.87 26.99 68.60 1.85 43.72 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.23 -8.97 6.82 99.48 0.68 -8.29 16 22 N -0.38 -11.29 12.16 -60.27 -0.73 -12.02 16 23 O 0.10 2.31 11.31 74.84 0.85 3.16 16 24 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.11 3.45 8.13 -2.39 -0.02 3.43 16 32 H 0.10 3.29 8.13 -2.39 -0.02 3.27 16 33 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -74.78 316.61 4.89 -69.89 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.05 Total: 7.23 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.25 Total: 6.05 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -3.94 Total: -87.65 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: 0.67 Total: -39.24 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.85 Total: 43.72 kcal Total: -74.78 4.89 -69.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.159 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds