Wall clock time and date at job start Mon Mar 30 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46752 * 2 1 4 4 C 1.50696 * 109.47054 * 119.99870 * 2 1 3 5 5 N 1.29951 * 126.29040 * 299.97345 * 4 2 1 6 6 O 1.21300 * 110.25058 * 179.73035 * 5 4 2 7 7 C 1.33638 * 109.81171 * 0.46467 * 6 5 4 8 8 C 1.50701 * 126.55178 * 179.80329 * 7 6 5 9 9 O 1.45198 * 109.47036 * 269.68971 * 8 7 6 10 10 C 1.34231 * 116.99983 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00053 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47517 * 59.99934 * 12 10 9 14 14 C 1.53000 * 109.47241 * 299.99973 * 12 10 9 15 15 C 1.50699 * 109.47290 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99801 * 359.97438 * 15 12 10 17 17 C 1.37882 * 120.00283 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00027 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47232 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47298 * 120.00003 * 19 17 15 22 22 H 1.48500 * 109.47076 * 239.99850 * 19 17 15 23 23 N 1.31133 * 106.90012 * 359.54221 * 7 6 5 24 24 H 1.09001 * 109.47218 * 300.00096 * 1 2 3 25 25 H 1.09001 * 109.47397 * 59.99856 * 1 2 3 26 26 H 1.08992 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46744 * 240.00121 * 2 1 3 28 28 H 1.09005 * 109.46686 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47015 * 299.99291 * 3 2 1 30 30 H 1.08992 * 109.47741 * 60.00402 * 3 2 1 31 31 H 1.09002 * 109.47060 * 29.69195 * 8 7 6 32 32 H 1.09001 * 109.47380 * 149.69283 * 8 7 6 33 33 H 1.09005 * 109.47326 * 300.00399 * 14 12 10 34 34 H 1.09003 * 109.46945 * 60.00367 * 14 12 10 35 35 H 1.09002 * 109.47368 * 179.97438 * 14 12 10 36 36 H 0.97000 * 119.99888 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7953 -0.3743 2.4632 6 8 2.3374 -1.1505 3.2216 7 6 2.9998 -2.0778 2.5235 8 6 3.8070 -3.2188 3.0870 9 8 5.1839 -2.7949 3.2675 10 6 6.0401 -3.7008 3.7655 11 8 5.6520 -4.8113 4.0411 12 6 7.4855 -3.3328 3.9809 13 1 7.5479 -2.4992 4.6804 14 6 8.1127 -2.9263 2.6459 15 6 8.2272 -4.5178 4.5436 16 1 7.7041 -5.4447 4.7273 17 6 9.5736 -4.4189 4.8239 18 7 10.2107 -3.2903 4.5997 19 14 10.4930 -5.8880 5.5207 20 1 9.5558 -7.0290 5.6788 21 1 11.5884 -6.2713 4.5942 22 1 11.0657 -5.5315 6.8436 23 7 2.8087 -1.8084 1.2545 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.3901 -3.5187 4.0485 32 1 3.7740 -4.0625 2.3977 33 1 8.0504 -3.7599 1.9463 34 1 7.5764 -2.0692 2.2385 35 1 9.1581 -2.6597 2.8017 36 1 11.1578 -3.2206 4.7973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329469313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:01 Heat of formation + Delta-G solvation = -31.643686 kcal Electronic energy + Delta-G solvation = -19987.731746 eV Core-core repulsion = 16668.396888 eV Total energy + Delta-G solvation = -3319.334858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.70171 -39.81622 -37.06779 -36.20595 -34.73575 -33.97499 -32.28368 -30.68935 -28.09996 -27.53677 -25.26202 -24.75919 -23.61897 -22.81385 -20.33893 -20.06014 -18.16628 -17.76479 -16.87353 -16.27522 -15.95408 -15.86644 -15.29898 -14.87816 -14.42452 -13.75146 -13.71587 -13.41128 -12.86883 -12.58179 -12.51716 -12.28941 -11.97918 -11.87822 -11.63897 -11.42801 -11.37326 -11.11427 -11.07282 -10.84081 -10.76484 -10.46133 -10.34951 -10.16799 -10.08955 -9.28563 -9.10162 -8.50866 -6.15840 -4.22033 0.89565 2.02006 2.53967 3.10517 3.26496 3.28664 3.34454 3.41379 3.63203 3.89632 4.37815 4.55663 4.69596 4.71345 4.95510 5.12818 5.17767 5.22341 5.27234 5.43682 5.46197 5.52026 5.66965 5.79944 5.86368 5.88988 5.97470 6.60413 6.77423 6.79776 6.97228 7.35824 7.68270 7.87437 8.03037 8.06028 8.63689 8.86683 9.44082 10.91523 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043968 B = 0.003480 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.674915 B = 8044.170261 C = 8374.302190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.173 3.827 5 N -0.377 5.377 6 O 0.087 5.913 7 C 0.191 3.809 8 C 0.155 3.845 9 O -0.360 6.360 10 C 0.472 3.528 11 O -0.509 6.509 12 C 0.060 3.940 13 H 0.067 0.933 14 C -0.135 4.135 15 C -0.515 4.515 16 H 0.078 0.922 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.462 5.462 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.023 0.977 35 H 0.097 0.903 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 6.721 -7.685 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.100 4.100 5 N -0.083 5.083 6 O 0.027 5.973 7 C -0.030 4.030 8 C 0.078 3.922 9 O -0.277 6.277 10 C 0.317 3.683 11 O -0.395 6.395 12 C 0.042 3.958 13 H 0.085 0.915 14 C -0.193 4.193 15 C -0.553 4.553 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.197 5.197 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.052 0.948 34 H 0.042 0.958 35 H 0.116 0.884 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.005 7.070 -7.788 19.152 hybrid contribution 0.532 -0.910 0.494 1.164 sum -15.473 6.160 -7.294 18.182 Atomic orbital electron populations 1.21851 0.92880 1.02564 1.02965 1.19577 0.96344 0.95510 0.90959 1.21859 1.01813 0.93820 1.02920 1.25871 0.96726 0.92735 0.94672 1.74577 1.17882 1.12954 1.02879 1.85319 1.47480 1.29260 1.35214 1.28240 0.95152 0.93752 0.85823 1.20854 0.80441 0.88357 1.02518 1.86714 1.17517 1.45974 1.77535 1.25568 0.89368 0.82323 0.71068 1.90530 1.78407 1.22760 1.47753 1.18842 0.79911 0.99976 0.97120 0.91491 1.21758 1.04352 0.97898 0.95270 1.21165 0.93813 0.97763 1.42511 0.90420 1.24944 0.97288 0.96458 0.95273 1.69887 1.10082 1.25012 1.47936 0.86301 0.79481 0.82368 0.78553 1.19443 1.20858 1.20867 1.71937 1.15778 1.14049 1.17925 0.91854 0.91022 0.92280 0.87897 0.92013 0.91020 0.91843 0.87658 0.86810 0.94769 0.95764 0.88410 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.26 9.18 37.16 0.34 -0.92 16 4 C 0.17 2.33 6.72 -156.37 -1.05 1.28 16 5 N -0.38 -5.41 12.16 30.90 0.38 -5.03 16 6 O 0.09 1.27 11.31 18.11 0.20 1.48 16 7 C 0.19 2.81 8.15 -13.06 -0.11 2.70 16 8 C 0.15 2.27 6.09 36.01 0.22 2.49 16 9 O -0.36 -6.79 10.11 -39.26 -0.40 -7.19 16 10 C 0.47 10.45 7.25 36.00 0.26 10.71 16 11 O -0.51 -12.00 15.21 -18.75 -0.29 -12.28 16 12 C 0.06 1.49 2.74 -92.92 -0.25 1.23 16 13 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 14 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 15 C -0.51 -13.98 8.37 -34.44 -0.29 -14.27 16 16 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.31 11.32 55.43 0.63 -23.68 16 19 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.46 -6.97 11.55 -9.87 -0.11 -7.08 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.11 1.33 8.13 -51.93 -0.42 0.90 16 32 H 0.11 1.56 8.13 -51.93 -0.42 1.14 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.02 0.50 8.11 -51.93 -0.42 0.07 16 35 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 36 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -29.68 316.57 -5.33 -35.00 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.88 Total: -2.78 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.61 Total: 0.84 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.89 Total: -35.80 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.48 Total: -17.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.68 -5.33 -35.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329469313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.361 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds